Human Gene TSPAN2 (ENST00000369516.7) from GENCODE V44
  Description: Homo sapiens tetraspanin 2 (TSPAN2), transcript variant 1, mRNA. (from RefSeq NM_005725)
RefSeq Summary (NM_005725): The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015].
Gencode Transcript: ENST00000369516.7
Gencode Gene: ENSG00000134198.10
Transcript (Including UTRs)
   Position: hg38 chr1:115,048,011-115,089,503 Size: 41,493 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg38 chr1:115,050,490-115,089,432 Size: 38,943 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:115,048,011-115,089,503)mRNA (may differ from genome)Protein (221 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TSN2_HUMAN
DESCRIPTION: RecName: Full=Tetraspanin-2; Short=Tspan-2; AltName: Full=Tetraspan NET-3;
FUNCTION: May play a role in signalling in oligodendrocytes in the early stages of their terminal differentiation into myelin-forming glia and may also function in stabilizing the mature sheath (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Probable).
SIMILARITY: Belongs to the tetraspanin (TM4SF) family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TSPAN2
Diseases sorted by gene-association score: migraine with or without aura 1 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.16 RPKM in Colon - Sigmoid
Total median expression: 234.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.1071-0.537 Picture PostScript Text
3' UTR -547.902479-0.221 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR023396 - CD81_extracellular
IPR000301 - Tetraspanin
IPR018499 - Tetraspanin/Peripherin
IPR018503 - Tetraspanin_CS
IPR008952 - Tetraspanin_EC2

Pfam Domains:
PF00335 - Tetraspanin family

ModBase Predicted Comparative 3D Structure on O60636
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006954 inflammatory response
GO:0007166 cell surface receptor signaling pathway
GO:0007420 brain development
GO:0014002 astrocyte development
GO:0014005 microglia development
GO:0042552 myelination
GO:0048709 oligodendrocyte differentiation
GO:0061564 axon development

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043209 myelin sheath


-  Descriptions from all associated GenBank mRNAs
  BC021675 - Homo sapiens tetraspanin 2, mRNA (cDNA clone MGC:22863 IMAGE:4042036), complete cds.
AF054839 - Homo sapiens tetraspan TM4SF (TSPAN-2) mRNA, complete cds.
GU971730 - Homo sapiens tetraspanin 2 isoform (TSPAN2) mRNA, complete cds, alternatively spliced.
AK315385 - Homo sapiens cDNA, FLJ96432, highly similar to Homo sapiens tetraspan 2 (TSPAN-2), mRNA.
KJ898156 - Synthetic construct Homo sapiens clone ccsbBroadEn_07550 TSPAN2 gene, encodes complete protein.
DQ893690 - Synthetic construct clone IMAGE:100006320; FLH195131.01X; RZPDo839E1283D tetraspanin 2 (TSPAN2) gene, encodes complete protein.
DQ893691 - Synthetic construct clone IMAGE:100006321; FLH195132.01X; RZPDo839F1283D tetraspanin 2 (TSPAN2) gene, encodes complete protein.
DQ893692 - Synthetic construct clone IMAGE:100006322; FLH195133.01X; RZPDo839G1283D tetraspanin 2 (TSPAN2) gene, encodes complete protein.
DQ893693 - Synthetic construct clone IMAGE:100006323; FLH195134.01X; RZPDo839H1283D tetraspanin 2 (TSPAN2) gene, encodes complete protein.
EU176787 - Synthetic construct Homo sapiens clone IMAGE:100011547; FLH195129.01L; RZPDo839C1283D tetraspanin 2 (TSPAN2) gene, encodes complete protein.
AK022144 - Homo sapiens cDNA FLJ12082 fis, clone HEMBB1002492.
JD538879 - Sequence 519903 from Patent EP1572962.
JD378481 - Sequence 359505 from Patent EP1572962.
JD299830 - Sequence 280854 from Patent EP1572962.
JD509364 - Sequence 490388 from Patent EP1572962.
JD503906 - Sequence 484930 from Patent EP1572962.
JD409348 - Sequence 390372 from Patent EP1572962.
JD528452 - Sequence 509476 from Patent EP1572962.
JD348480 - Sequence 329504 from Patent EP1572962.
JD357100 - Sequence 338124 from Patent EP1572962.
JD559129 - Sequence 540153 from Patent EP1572962.
JD174592 - Sequence 155616 from Patent EP1572962.
JD265407 - Sequence 246431 from Patent EP1572962.
JD088002 - Sequence 69026 from Patent EP1572962.
JD510836 - Sequence 491860 from Patent EP1572962.
JD052990 - Sequence 34014 from Patent EP1572962.
JD239302 - Sequence 220326 from Patent EP1572962.
JD037261 - Sequence 18285 from Patent EP1572962.
JD502487 - Sequence 483511 from Patent EP1572962.
JD490642 - Sequence 471666 from Patent EP1572962.
JD466897 - Sequence 447921 from Patent EP1572962.
JD202014 - Sequence 183038 from Patent EP1572962.
JD555649 - Sequence 536673 from Patent EP1572962.
JD299464 - Sequence 280488 from Patent EP1572962.
JD434188 - Sequence 415212 from Patent EP1572962.
JD081836 - Sequence 62860 from Patent EP1572962.
JD516097 - Sequence 497121 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000369516.1, ENST00000369516.2, ENST00000369516.3, ENST00000369516.4, ENST00000369516.5, ENST00000369516.6, NM_005725, O60636, Q5TET2, Q8WU05, TSN2_HUMAN, uc001eft.1, uc001eft.2, uc001eft.3, uc001eft.4, uc001eft.5, uc001eft.6
UCSC ID: ENST00000369516.7
RefSeq Accession: NM_005725
Protein: O60636 (aka TSN2_HUMAN)
CCDS: CCDS881.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.