Human Gene OTUD7B (ENST00000581312.6) from GENCODE V44
  Description: Homo sapiens OTU deubiquitinase 7B (OTUD7B), mRNA. (from RefSeq NM_020205)
Gencode Transcript: ENST00000581312.6
Gencode Gene: ENSG00000264522.6
Transcript (Including UTRs)
   Position: hg38 chr1:149,937,812-150,010,726 Size: 72,915 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg38 chr1:149,943,857-149,977,510 Size: 33,654 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:149,937,812-150,010,726)mRNA (may differ from genome)Protein (843 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OTU7B_HUMAN
DESCRIPTION: RecName: Full=OTU domain-containing protein 7B; EC=3.4.19.12; AltName: Full=Cellular zinc finger anti-NF-kappa-B protein; AltName: Full=Zinc finger A20 domain-containing protein 1; AltName: Full=Zinc finger protein Cezanne;
FUNCTION: Has deubiquitinating activity that is directed towards 'Lys-48' or 'Lys-63'-linked polyubiquitin chains. Hydrolyzes both linear and branched forms of polyubiquitin. Negative regulator of nuclear factor NF-kappa-B.
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
SUBUNIT: Interacts with TRAF6.
INTERACTION: Q8IVM0:CCDC50; NbExp=5; IntAct=EBI-527784, EBI-723996; Q99497:PARK7; NbExp=3; IntAct=EBI-527784, EBI-1164361;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Widely expressed. Abundant in kidney, heart and fetal liver. Expressed differentially among B-cells at distinct developmental stages. Higher expression seen in primary immature B-cells as compared to the mature cells.
SIMILARITY: Belongs to the peptidase C64 family.
SIMILARITY: Contains 1 A20-type zinc finger.
SIMILARITY: Contains 1 OTU domain.
SEQUENCE CAUTION: Sequence=CAB97494.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -152.00345-0.441 Picture PostScript Text
3' UTR -1956.006045-0.324 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003323 - OTU
IPR009060 - UBA-like
IPR002653 - Znf_A20

Pfam Domains:
PF02338 - OTU-like cysteine protease

ModBase Predicted Comparative 3D Structure on Q6GQQ9
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGD  WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0046872 metal ion binding
GO:0070530 K63-linked polyubiquitin binding
GO:1990380 Lys48-specific deubiquitinase activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0002250 adaptive immune response
GO:0002376 immune system process
GO:0002385 mucosal immune response
GO:0006508 proteolysis
GO:0006955 immune response
GO:0016579 protein deubiquitination
GO:0032717 negative regulation of interleukin-8 production
GO:0035871 protein K11-linked deubiquitination
GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0070536 protein K63-linked deubiquitination
GO:0071108 protein K48-linked deubiquitination
GO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1900181 negative regulation of protein localization to nucleus

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC072681 - Homo sapiens OTU domain containing 7B, mRNA (cDNA clone MGC:87939 IMAGE:6170513), complete cds.
AJ293573 - Homo sapiens mRNA for zinc finger protein Cezanne (CEZANNE gene).
AL122102 - Homo sapiens mRNA; cDNA DKFZp434H0717 (from clone DKFZp434H0717); partial cds.
AK299790 - Homo sapiens cDNA FLJ61735 complete cds, highly similar to Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-).
EU446827 - Synthetic construct Homo sapiens clone IMAGE:100070362; IMAGE:100012036; FLH258346.01L OTU domain containing 7B (OTUD7B) gene, encodes complete protein.
JD547616 - Sequence 528640 from Patent EP1572962.
DQ587976 - Homo sapiens piRNA piR-55088, complete sequence.
JD281622 - Sequence 262646 from Patent EP1572962.
JD070049 - Sequence 51073 from Patent EP1572962.
JD514067 - Sequence 495091 from Patent EP1572962.
JD206180 - Sequence 187204 from Patent EP1572962.
BC015719 - Homo sapiens, clone IMAGE:3909104, mRNA.
JD219017 - Sequence 200041 from Patent EP1572962.
JD329259 - Sequence 310283 from Patent EP1572962.
JD093898 - Sequence 74922 from Patent EP1572962.
JD163789 - Sequence 144813 from Patent EP1572962.
JD358568 - Sequence 339592 from Patent EP1572962.
JD139578 - Sequence 120602 from Patent EP1572962.
JD461007 - Sequence 442031 from Patent EP1572962.
JD175067 - Sequence 156091 from Patent EP1572962.
JD280426 - Sequence 261450 from Patent EP1572962.
JD236239 - Sequence 217263 from Patent EP1572962.
JD110864 - Sequence 91888 from Patent EP1572962.
BC020622 - Homo sapiens OTU domain containing 7B, mRNA (cDNA clone IMAGE:4294961), complete cds.
BX641079 - Homo sapiens mRNA; cDNA DKFZp686G11129 (from clone DKFZp686G11129).
JD271230 - Sequence 252254 from Patent EP1572962.
JD481762 - Sequence 462786 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6GQQ9 (Reactome details) participates in the following event(s):

R-HSA-5690870 OTUD7B,TNFAIP3 deubiquitinate TRAF6
R-HSA-8869506 TNFAIP3 in OTUD7B:TNFAIP3:ZRANB1 deubiquitinates K63polyUb-TRAF6
R-HSA-5689896 Ovarian tumor domain proteases
R-HSA-5357905 Regulation of TNFR1 signaling
R-HSA-5688426 Deubiquitination
R-HSA-75893 TNF signaling
R-HSA-597592 Post-translational protein modification
R-HSA-73887 Death Receptor Signalling
R-HSA-392499 Metabolism of proteins
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: D3DUZ8, ENST00000581312.1, ENST00000581312.2, ENST00000581312.3, ENST00000581312.4, ENST00000581312.5, NM_020205, OTU7B_HUMAN, Q5SZ60, Q6GQQ9, Q8WWA7, Q9NQ53, Q9UFF4, uc001etn.1, uc001etn.2, uc001etn.3, uc001etn.4, uc001etn.5, uc001etn.6, ZA20D1
UCSC ID: ENST00000581312.6
RefSeq Accession: NM_020205
Protein: Q6GQQ9 (aka OTU7B_HUMAN)
CCDS: CCDS72903.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.