Human Gene RUSC1-AS1 (ENST00000450199.1) from GENCODE V44
  Description: Homo sapiens RUSC1 antisense RNA 1 (RUSC1-AS1), transcript variant 3, long non-coding RNA. (from RefSeq NR_145426)
Gencode Transcript: ENST00000450199.1
Gencode Gene: ENSG00000225855.7
Transcript (Including UTRs)
   Position: hg38 chr1:155,320,159-155,324,176 Size: 4,018 Total Exon Count: 2 Strand: -

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr1:155,320,159-155,324,176)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeHGNCLynxMalacards

-  Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.00 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 712.06 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  AK125510 - Homo sapiens cDNA FLJ43522 fis, clone PLACE5000260.
AK093295 - Homo sapiens cDNA FLJ35976 fis, clone TESTI2013427.
AX748038 - Sequence 1563 from Patent EP1308459.
BC131614 - Homo sapiens chromosome 1 open reading frame 104, mRNA (cDNA clone MGC:149516 IMAGE:40115930), complete cds.
KJ904140 - Synthetic construct Homo sapiens clone ccsbBroadEn_13534 RUSC1-AS1 gene, encodes complete protein.
JD023355 - Sequence 4379 from Patent EP1572962.
BC062571 - Homo sapiens chromosome 1 open reading frame 104, mRNA (cDNA clone MGC:70363 IMAGE:5183308), complete cds.
BC080538 - Homo sapiens chromosome 1 open reading frame 104, mRNA (cDNA clone MGC:99462 IMAGE:5018492), complete cds.
LF211904 - JP 2014500723-A/19407: Polycomb-Associated Non-Coding RNAs.
MA447481 - JP 2018138019-A/19407: Polycomb-Associated Non-Coding RNAs.
JD020762 - Sequence 1786 from Patent EP1572962.
JD030709 - Sequence 11733 from Patent EP1572962.
KJ900573 - Synthetic construct Homo sapiens clone ccsbBroadEn_09967 RUSC1-AS1 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_145426, uc001fki.1, uc001fki.2, uc001fki.3, uc001fki.4
UCSC ID: ENST00000450199.1
RefSeq Accession: NR_145426

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.