Human Gene HSPB8 (ENST00000281938.7) from GENCODE V44
  Description: Homo sapiens heat shock protein family B (small) member 8 (HSPB8), mRNA. (from RefSeq NM_014365)
RefSeq Summary (NM_014365): The protein encoded by this gene belongs to the superfamily of small heat-shock proteins containing a conservative alpha-crystallin domain at the C-terminal part of the molecule. The expression of this gene in induced by estrogen in estrogen receptor-positive breast cancer cells, and this protein also functions as a chaperone in association with Bag3, a stimulator of macroautophagy. Thus, this gene appears to be involved in regulation of cell proliferation, apoptosis, and carcinogenesis, and mutations in this gene have been associated with different neuromuscular diseases, including Charcot-Marie-Tooth disease. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000281938.7
Gencode Gene: ENSG00000152137.8
Transcript (Including UTRs)
   Position: hg38 chr12:119,178,931-119,194,746 Size: 15,816 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr12:119,179,313-119,193,858 Size: 14,546 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:119,178,931-119,194,746)mRNA (may differ from genome)Protein (196 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HSPB8_HUMAN
DESCRIPTION: RecName: Full=Heat shock protein beta-8; Short=HspB8; AltName: Full=Alpha-crystallin C chain; AltName: Full=E2-induced gene 1 protein; AltName: Full=Protein kinase H11; AltName: Full=Small stress protein-like protein HSP22;
FUNCTION: Displays temperature-dependent chaperone activity.
SUBUNIT: Monomer. Interacts with HSPB1. Interacts with DNAJB6.
INTERACTION: Self; NbExp=6; IntAct=EBI-739074, EBI-739074; P02511:CRYAB; NbExp=2; IntAct=EBI-739074, EBI-739060; P04792:HSPB1; NbExp=3; IntAct=EBI-739074, EBI-352682; Q16082:HSPB2; NbExp=3; IntAct=EBI-739074, EBI-739395; O14558:HSPB6; NbExp=2; IntAct=EBI-739074, EBI-739095; Q9UBY9:HSPB7; NbExp=5; IntAct=EBI-739074, EBI-739361;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Translocates to nuclear foci during heat shock.
TISSUE SPECIFICITY: Predominantly expressed in skeletal muscle and heart.
INDUCTION: By 17-beta-estradiol.
DISEASE: Defects in HSPB8 are the cause of distal hereditary motor neuronopathy type 2A (HMN2A) [MIM:158590]; also known as distal hereditary motor neuropathy type IIA or spinal Charcot-Marie-Tooth disease IIA. Distal hereditary motor neuronopathies constitute a heterogeneous group of neuromuscular disorders caused by selective impairment of motor neurons in the anterior horn of the spinal cord, without sensory deficit in the posterior horn. The overall clinical picture consists of a classical distal muscular atrophy syndrome in the legs without clinical sensory loss. The disease starts with weakness and wasting of distal muscles of the anterior tibial and peroneal compartments of the legs. Later on, weakness and atrophy may expand to the proximal muscles of the lower limbs and/or to the distal upper limbs.
DISEASE: Defects in HSPB8 are the cause of Charcot-Marie-Tooth disease type 2L (CMT2L) [MIM:608673]. CMT2L is an axonal form of Charcot-Marie-Tooth disease. Axonal CMT neuropathies are characterized by signs of axonal regeneration in the absence of obvious myelin alterations, normal or slightly reduced nerve conduction velocities, and progressive distal muscle weakness and atrophy.
SIMILARITY: Belongs to the small heat shock protein (HSP20) family.
CAUTION: Was reported (PubMed:10833516) to have a protein kinase activity and to act as a Mn(2+)-dependent serine-threonine- specific protein kinase.
WEB RESOURCE: Name=Inherited peripheral neuropathies mutation db; URL="http://www.molgen.ua.ac.be/CMTMutations/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/HSPB8";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

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Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HSPB8
Diseases sorted by gene-association score: neuropathy, distal hereditary motor, type iia* (1300), charcot-marie-tooth disease, axonal, type 2l* (1268), charcot-marie-tooth disease type 2l* (419), distal hereditary motor neuropathy, type ii* (369), autosomal dominant distal axonal motor neuropathy-myofibrillar myopathy syndrome* (350), charcot-marie-tooth disease* (139), roussy-levy syndrome* (103), charcot-marie-tooth neuropathy type 2l* (100), estrogen-receptor positive breast cancer (33), distal hereditary motor neuropathy (8), spastic paraplegia 36, autosomal dominant (8), charcot-marie-tooth neuropathy, x-linked recessive, 3 (8), neuromuscular disease (7), tooth disease (5), spinal and bulbar muscular atrophy of kennedy (5), charcot-marie-tooth disease, axonal, type 2k (5), charcot-marie-tooth disease, type 2e (1), neuropathy, congenital hypomyelinating (1), amyotrophic lateral sclerosis 1 (0)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 244.98 RPKM in Esophagus - Muscularis
Total median expression: 2871.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -162.30382-0.425 Picture PostScript Text
3' UTR -264.80888-0.298 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002068 - a-crystallin/Hsp20_dom
IPR001436 - Alpha-crystallin/HSP
IPR008978 - HSP20-like_chaperone

Pfam Domains:
PF00011 - Hsp20/alpha crystallin family

ModBase Predicted Comparative 3D Structure on Q9UJY1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0004672 protein kinase activity

Biological Process:
GO:0008150 biological_process
GO:1900034 regulation of cellular response to heat

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AF191017 - Homo sapiens E2IG1 (E2IG1) mRNA, complete cds.
BC002673 - Homo sapiens heat shock 22kDa protein 8, mRNA (cDNA clone MGC:3383 IMAGE:3607117), complete cds.
AK312501 - Homo sapiens cDNA, FLJ92864, Homo sapiens protein kinase H11 (H11), mRNA.
AF217987 - Homo sapiens clone PP1629 unknown mRNA.
AF133207 - Homo sapiens protein kinase (H11) mRNA, complete cds.
AL136936 - Homo sapiens mRNA; cDNA DKFZp586E1323 (from clone DKFZp586E1323); complete cds.
JD151160 - Sequence 132184 from Patent EP1572962.
JD131740 - Sequence 112764 from Patent EP1572962.
JD336929 - Sequence 317953 from Patent EP1572962.
JD290973 - Sequence 271997 from Patent EP1572962.
JD277815 - Sequence 258839 from Patent EP1572962.
JD194312 - Sequence 175336 from Patent EP1572962.
JD436973 - Sequence 417997 from Patent EP1572962.
JD310413 - Sequence 291437 from Patent EP1572962.
JD375808 - Sequence 356832 from Patent EP1572962.
JD485158 - Sequence 466182 from Patent EP1572962.
JD387297 - Sequence 368321 from Patent EP1572962.
JD403602 - Sequence 384626 from Patent EP1572962.
JD428664 - Sequence 409688 from Patent EP1572962.
AF250138 - Homo sapiens small stress protein-like protein HSP22 mRNA, complete cds.
EU176429 - Synthetic construct Homo sapiens clone IMAGE:100006506; FLH194021.01X; RZPDo839B07252D heat shock 22kDa protein 8 (HSPB8) gene, encodes complete protein.
DQ896404 - Synthetic construct Homo sapiens clone IMAGE:100010864; FLH194014.01L; RZPDo839E0669D heat shock 22kDa protein 8 (HSPB8) gene, encodes complete protein.
KJ893564 - Synthetic construct Homo sapiens clone ccsbBroadEn_02958 HSPB8 gene, encodes complete protein.
KJ905451 - Synthetic construct Homo sapiens clone ccsbBroadEn_15034 HSPB8 gene, encodes complete protein.
KR709927 - Synthetic construct Homo sapiens clone CCSBHm_00007863 HSPB8 (HSPB8) mRNA, encodes complete protein.
KR709928 - Synthetic construct Homo sapiens clone CCSBHm_00007864 HSPB8 (HSPB8) mRNA, encodes complete protein.
KR709929 - Synthetic construct Homo sapiens clone CCSBHm_00007865 HSPB8 (HSPB8) mRNA, encodes complete protein.
KR709930 - Synthetic construct Homo sapiens clone CCSBHm_00007866 HSPB8 (HSPB8) mRNA, encodes complete protein.
BT006876 - Homo sapiens protein kinase H11 mRNA, complete cds.
CR533453 - Homo sapiens full open reading frame cDNA clone RZPDo834C0117D for gene HSPB8, heat shock 27kDa protein 8; complete cds, incl. stopcodon.
JD372586 - Sequence 353610 from Patent EP1572962.
JD386103 - Sequence 367127 from Patent EP1572962.
JD195927 - Sequence 176951 from Patent EP1572962.
JD358008 - Sequence 339032 from Patent EP1572962.
JD300213 - Sequence 281237 from Patent EP1572962.
JD292038 - Sequence 273062 from Patent EP1572962.
JD196771 - Sequence 177795 from Patent EP1572962.
JD503623 - Sequence 484647 from Patent EP1572962.
JD368249 - Sequence 349273 from Patent EP1572962.
JD303240 - Sequence 284264 from Patent EP1572962.
JD230729 - Sequence 211753 from Patent EP1572962.
JD339253 - Sequence 320277 from Patent EP1572962.
JD563080 - Sequence 544104 from Patent EP1572962.
JD368944 - Sequence 349968 from Patent EP1572962.
JD385816 - Sequence 366840 from Patent EP1572962.
JD380642 - Sequence 361666 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UJY1 (Reactome details) participates in the following event(s):

R-HSA-3371571 HSF1-dependent transactivation
R-HSA-3371556 Cellular response to heat stress
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6A6, CRYAC, E2IG1, ENST00000281938.1, ENST00000281938.2, ENST00000281938.3, ENST00000281938.4, ENST00000281938.5, ENST00000281938.6, HSP22, HSPB8_HUMAN, NM_014365, PP1629, Q6FIH3, Q9UJY1, Q9UKS3, uc001txb.1, uc001txb.2, uc001txb.3, uc001txb.4, uc001txb.5
UCSC ID: ENST00000281938.7
RefSeq Accession: NM_014365
Protein: Q9UJY1 (aka HSPB8_HUMAN or HSB8_HUMAN)
CCDS: CCDS9189.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene HSPB8:
cmt (Charcot-Marie-Tooth Hereditary Neuropathy Overview)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.