Human Gene ACYP1 (ENST00000238618.8) from GENCODE V44
  Description: Homo sapiens acylphosphatase 1 (ACYP1), transcript variant 1, mRNA. (from RefSeq NM_001107)
RefSeq Summary (NM_001107): This gene is a member of the acylphosphatase family. The encoded protein is a small cytosolic enzyme that catalyzes the hydrolysis of the carboxyl-phosphate bond of acylphosphates. Two isoenzymes have been isolated and described based on their tissue localization: erythrocyte (common) type acylphosphatase encoded by this gene, and muscle type acylphosphatase. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014].
Gencode Transcript: ENST00000238618.8
Gencode Gene: ENSG00000119640.9
Transcript (Including UTRs)
   Position: hg38 chr14:75,053,243-75,064,024 Size: 10,782 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chr14:75,053,444-75,063,553 Size: 10,110 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:75,053,243-75,064,024)mRNA (may differ from genome)Protein (99 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACYP1_HUMAN
DESCRIPTION: RecName: Full=Acylphosphatase-1; EC=3.6.1.7; AltName: Full=Acylphosphatase, erythrocyte isozyme; AltName: Full=Acylphosphatase, organ-common type isozyme; AltName: Full=Acylphosphate phosphohydrolase 1;
FUNCTION: Its physiological role is not yet clear.
CATALYTIC ACTIVITY: An acylphosphate + H(2)O = a carboxylate + phosphate.
TISSUE SPECIFICITY: Organ-common type isozyme is found in many different tissues.
SIMILARITY: Belongs to the acylphosphatase family.
SIMILARITY: Contains 1 acylphosphatase-like domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.80 RPKM in Pituitary
Total median expression: 270.69 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.9079-0.315 Picture PostScript Text
3' UTR -32.50201-0.162 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020456 - Acylphosphatase
IPR001792 - Acylphosphatase-like
IPR017968 - Acylphosphatase_CS

Pfam Domains:
PF00708 - Acylphosphatase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2K7J - NMR MuPIT 2K7K - NMR MuPIT 2VH7 - X-ray MuPIT 2W4C - X-ray MuPIT 2W4P - X-ray MuPIT 3TOQ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P07311
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003998 acylphosphatase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006796 phosphate-containing compound metabolic process


-  Descriptions from all associated GenBank mRNAs
  DL491814 - Novel nucleic acids.
X84194 - H.sapiens mRNA for acylphosphatase, erythrocyte (CT) isoenzyme.
BC035568 - Homo sapiens acylphosphatase 1, erythrocyte (common) type, mRNA (cDNA clone MGC:40337 IMAGE:5392248), complete cds.
DL490388 - Novel nucleic acids.
JD502498 - Sequence 483522 from Patent EP1572962.
AK312101 - Homo sapiens cDNA, FLJ92383, Homo sapiens acylphosphatase 1, erythrocyte (common) type (ACYP1), mRNA.
KJ890627 - Synthetic construct Homo sapiens clone ccsbBroadEn_00021 ACYP1 gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00620 - Pyruvate metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACYP1_HUMAN, ACYPE, B2R590, ENST00000238618.1, ENST00000238618.2, ENST00000238618.3, ENST00000238618.4, ENST00000238618.5, ENST00000238618.6, ENST00000238618.7, NM_001107, P07311, uc001xrg.1, uc001xrg.2, uc001xrg.3, uc001xrg.4, uc001xrg.5
UCSC ID: ENST00000238618.8
RefSeq Accession: NM_001107
Protein: P07311 (aka ACYP1_HUMAN)
CCDS: CCDS9838.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.