Human Gene ETV4 (ENST00000319349.10) from GENCODE V44
  Description: Homo sapiens ETS variant transcription factor 4 (ETV4), transcript variant 2, mRNA. (from RefSeq NM_001079675)
Gencode Transcript: ENST00000319349.10
Gencode Gene: ENSG00000175832.13
Transcript (Including UTRs)
   Position: hg38 chr17:43,527,846-43,546,340 Size: 18,495 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg38 chr17:43,528,519-43,545,617 Size: 17,099 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:43,527,846-43,546,340)mRNA (may differ from genome)Protein (484 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ETV4_HUMAN
DESCRIPTION: RecName: Full=ETS translocation variant 4; AltName: Full=Adenovirus E1A enhancer-binding protein; AltName: Full=E1A-F; AltName: Full=Polyomavirus enhancer activator 3 homolog; Short=Protein PEA3;
FUNCTION: Transcriptional activator that binds to the enhancer of the adenovirus E1A gene; the core-binding sequence is 5'[AC]GGA[AT]GT-3'.
SUBCELLULAR LOCATION: Nucleus.
PTM: Sumoylated; enhanced upon ERK/MAP kinase pathway activation, it positively regulates the transcriptional activator capacity. Sumoylation at Lys-96 probably requires phosphorylation at Ser- 101. Transiently polysumoylated and desumoylated by SENP1. Sumoylation is a prerequisite to polyubiquitination which in turn increases proteasomal-mediated degradation. Probably polyubiquitinated by RNF4 and deubiquitinated by USP2.
SIMILARITY: Belongs to the ETS family.
SIMILARITY: Contains 1 ETS DNA-binding domain.
SEQUENCE CAUTION: Sequence=AAA95991.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ETV4
Diseases sorted by gene-association score: ewing sarcoma* (129), extraosseous ewing's sarcoma (13), epidermodysplasia verruciformis (8), microphthalmia, isolated 1 (5), breast cancer (2), ovarian cancer, somatic (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.25 RPKM in Pituitary
Total median expression: 54.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -117.60207-0.568 Picture PostScript Text
3' UTR -274.20673-0.407 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000418 - Ets
IPR006715 - ETS_PEA3_N
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00178 - Ets-domain
PF04621 - PEA3 subfamily ETS-domain transcription factor N terminal domain

ModBase Predicted Comparative 3D Structure on P43268
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043565 sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0030154 cell differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  E06025 - cDNA encoding a protein(E1A-F) which binds to enhancer core region of adenovirus E1A gene.
LP882422 - Sequence 17 from Patent WO2017180581.
D12765 - Homo sapiens mRNA for E1A-F, partial cds.
U18018 - Human E1A enhancer binding protein (E1A-F) mRNA, partial cds.
BC016623 - Homo sapiens ets variant 4, mRNA (cDNA clone MGC:9090 IMAGE:3854349), complete cds.
JD163302 - Sequence 144326 from Patent EP1572962.
JD118989 - Sequence 100013 from Patent EP1572962.
JD075640 - Sequence 56664 from Patent EP1572962.
U35622 - Homo sapiens EWS protein/E1A enhancer binding protein chimera mRNA, complete cds.
JD403990 - Sequence 385014 from Patent EP1572962.
JD362131 - Sequence 343155 from Patent EP1572962.
AK299019 - Homo sapiens cDNA FLJ59389 complete cds, highly similar to ETS translocation variant 4.
JD544751 - Sequence 525775 from Patent EP1572962.
JD446915 - Sequence 427939 from Patent EP1572962.
JD382592 - Sequence 363616 from Patent EP1572962.
JD500222 - Sequence 481246 from Patent EP1572962.
JD233577 - Sequence 214601 from Patent EP1572962.
JD224496 - Sequence 205520 from Patent EP1572962.
JD436970 - Sequence 417994 from Patent EP1572962.
AK315961 - Homo sapiens cDNA, FLJ78860 complete cds, highly similar to ETS translocation variant 4.
AK298872 - Homo sapiens cDNA FLJ55351 complete cds, highly similar to ETS translocation variant 4.
JD362621 - Sequence 343645 from Patent EP1572962.
AK290429 - Homo sapiens cDNA FLJ76253 complete cds, highly similar to Homo sapiens ets variant gene 4 (E1A enhancer binding protein, E1AF) (ETV4), mRNA.
JD382350 - Sequence 363374 from Patent EP1572962.
JD239592 - Sequence 220616 from Patent EP1572962.
JD369380 - Sequence 350404 from Patent EP1572962.
JD387711 - Sequence 368735 from Patent EP1572962.
BC007242 - Homo sapiens ets variant 4, mRNA (cDNA clone IMAGE:2964546), with apparent retained intron.
DQ892065 - Synthetic construct clone IMAGE:100004695; FLH182832.01X; RZPDo839C09140D ets variant gene 4 (E1A enhancer binding protein, E1AF) (ETV4) gene, encodes complete protein.
DQ895259 - Synthetic construct Homo sapiens clone IMAGE:100009719; FLH182828.01L; RZPDo839C09139D ets variant gene 4 (E1A enhancer binding protein, E1AF) (ETV4) gene, encodes complete protein.
E06024 - cDNA encoding a protein(E1A-F) which binds to enhancer core region of adenovirus E1A gene.
EU599085 - Homo sapiens DEAD box polypeptide 5/ets variant protein 4 fusion protein (DDX5-ETV4 fusion) mRNA, complete cds.
AK312934 - Homo sapiens cDNA, FLJ93385.
KJ901416 - Synthetic construct Homo sapiens clone ccsbBroadEn_10810 ETV4 gene, encodes complete protein.
AB463615 - Synthetic construct DNA, clone: pF1KB7738, Homo sapiens ETV4 gene for ets variant gene 4, without stop codon, in Flexi system.
EU693078 - Homo sapiens CANT1/ETV4 fusion mRNA sequence.
DQ396625 - Homo sapiens TMPRSS2/ETV4a fusion transcript.
DQ396626 - Homo sapiens TMPRSS2/ETV4b fusion transcript.
EU693079 - Homo sapiens TMPRSS2/ETV4 fusion mRNA sequence.
LY623326 - KR 1020180134347-A/17: DIAGNOSTIC AND THERAPEUTIC METHODS FOR CANCER.
MB416869 - JP 2019518426-A/9: DIAGNOSTIC AND THERAPEUTIC METHODS FOR CANCER.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P43268 (Reactome details) participates in the following event(s):

R-HSA-5687097 p-S857 NCOA3 binds ETV4
R-HSA-5687099 p-S857 NCOA3:ETV4 bind MMP2 and MMP10 promoter
R-HSA-5687128 MAPK6/MAPK4 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K314, E1AF, ENST00000319349.1, ENST00000319349.2, ENST00000319349.3, ENST00000319349.4, ENST00000319349.5, ENST00000319349.6, ENST00000319349.7, ENST00000319349.8, ENST00000319349.9, ETV4_HUMAN, NM_001079675, P43268, PEA3, Q96AW9, uc002idx.1, uc002idx.2, uc002idx.3, uc002idx.4, uc002idx.5, uc002idx.6
UCSC ID: ENST00000319349.10
RefSeq Accession: NM_001079675
Protein: P43268 (aka ETV4_HUMAN)
CCDS: CCDS11465.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.