Human Gene AXIN2 (ENST00000307078.10) from GENCODE V44
  Description: Homo sapiens axin 2 (AXIN2), transcript variant 1, mRNA. (from RefSeq NM_004655)
RefSeq Summary (NM_004655): The Axin-related protein, Axin2, presumably plays an important role in the regulation of the stability of beta-catenin in the Wnt signaling pathway, like its rodent homologs, mouse conductin/rat axil. In mouse, conductin organizes a multiprotein complex of APC (adenomatous polyposis of the colon), beta-catenin, glycogen synthase kinase 3-beta, and conductin, which leads to the degradation of beta-catenin. Apparently, the deregulation of beta-catenin is an important event in the genesis of a number of malignancies. The AXIN2 gene has been mapped to 17q23-q24, a region that shows frequent loss of heterozygosity in breast cancer, neuroblastoma, and other tumors. Mutations in this gene have been associated with colorectal cancer with defective mismatch repair. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000307078.10
Gencode Gene: ENSG00000168646.14
Transcript (Including UTRs)
   Position: hg38 chr17:65,528,563-65,561,648 Size: 33,086 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg38 chr17:65,529,976-65,558,620 Size: 28,645 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:65,528,563-65,561,648)mRNA (may differ from genome)Protein (843 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AXIN2_HUMAN
DESCRIPTION: RecName: Full=Axin-2; AltName: Full=Axin-like protein; Short=Axil; AltName: Full=Axis inhibition protein 2; AltName: Full=Conductin;
FUNCTION: Inhibitor of the Wnt signaling pathway. Down-regulates beta-catenin. Probably facilitate the phosphorylation of beta- catenin and APC by GSK3B (By similarity).
SUBUNIT: Interacts with glycogen synthase kinase-3 beta (GSK3B) and beta-catenin. The interaction between axin and beta-catenin occurs via the armadillo repeats contained in beta-catenin (By similarity). Interacts with SMAD7 and RNF111. Interacts with ANKRD6.
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Expressed in brain and lymphoblast.
DOMAIN: The tankyrase-binding motif (also named TBD) is required for interaction with tankyrase TNKS and TNKS2 (By similarity).
PTM: Probably phosphorylated by GSK3B and dephosphorylated by PP2A (By similarity).
PTM: ADP-ribosylated by tankyrase TNKS and TNKS2. Poly-ADP- ribosylated protein is recognized by RNF146, followed by ubiquitination and subsequent activation of the Wnt signaling pathway.
PTM: Ubiquitinated by RNF146 when poly-ADP-ribosylated, leading to its degradation and subsequent activation of the Wnt signaling pathway. Deubiquitinated by USP34, deubiquitinated downstream of beta-catenin stabilization step: deubiquitination is important Wnt signaling to positively regulate beta-catenin (CTNBB1)-mediated transcription.
DISEASE: Defects in AXIN2 are involved in colorectal cancer (CRC) [MIM:114500]. They appear to be specifically associated with defective mismatch repair.
DISEASE: Defects in AXIN2 are the cause of oligodontia-colorectal cancer syndrome (ODCRCS) [MIM:608615]. Affected individuals manifest severe tooth agenesis and colorectal cancer or precancerous lesions of variable types.
SIMILARITY: Contains 1 DIX domain.
SIMILARITY: Contains 1 RGS domain.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/AXIN2ID456ch17q24.html";

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: AXIN2
Diseases sorted by gene-association score: oligodontia-colorectal cancer syndrome* (1369), axin2-related attenuated familial adenomatous polyposis* (350), colorectal cancer* (312), tooth agenesis* (158), colonic benign neoplasm* (89), adenoma (9), anodontia (7), adenomatous polyposis coli (6), esophageal basaloid squamous cell carcinoma (4), familial adenomatous polyposis (3), breast cancer (3), neuroblastoma (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.30 RPKM in Fallopian Tube
Total median expression: 293.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -124.20315-0.394 Picture PostScript Text
3' UTR -390.201413-0.276 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR014936 - Axin_b-cat-bd
IPR001158 - DIX
IPR000342 - Regulat_G_prot_signal
IPR024066 - Regulat_G_prot_signal_dom1
IPR016137 - Regulat_G_prot_signal_superfam

Pfam Domains:
PF08833 - Axin beta-catenin binding domain
PF00778 - DIX domain
PF00615 - Regulator of G protein signaling domain

ModBase Predicted Comparative 3D Structure on Q9Y2T1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0019899 enzyme binding
GO:0031625 ubiquitin protein ligase binding
GO:0070411 I-SMAD binding

Biological Process:
GO:0001756 somitogenesis
GO:0001934 positive regulation of protein phosphorylation
GO:0001957 intramembranous ossification
GO:0003139 secondary heart field specification
GO:0003413 chondrocyte differentiation involved in endochondral bone morphogenesis
GO:0007275 multicellular organism development
GO:0008283 cell proliferation
GO:0008285 negative regulation of cell proliferation
GO:0010718 positive regulation of epithelial to mesenchymal transition
GO:0010942 positive regulation of cell death
GO:0016055 Wnt signaling pathway
GO:0030111 regulation of Wnt signaling pathway
GO:0030282 bone mineralization
GO:0032423 regulation of mismatch repair
GO:0034613 cellular protein localization
GO:0042476 odontogenesis
GO:0043547 positive regulation of GTPase activity
GO:0043570 maintenance of DNA repeat elements
GO:0045668 negative regulation of osteoblast differentiation
GO:0048255 mRNA stabilization
GO:0061181 regulation of chondrocyte development
GO:0070602 regulation of centromeric sister chromatid cohesion
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1904837 beta-catenin-TCF complex assembly

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0030877 beta-catenin destruction complex


-  Descriptions from all associated GenBank mRNAs
  AB052751 - Homo sapiens Axin2 mRNA for conductin, partial cds and 3'UTR.
BC006295 - Homo sapiens axin 2, mRNA (cDNA clone IMAGE:4053244), complete cds.
CR933657 - Homo sapiens mRNA; cDNA DKFZp781B0869 (from clone DKFZp781B0869).
KJ901871 - Synthetic construct Homo sapiens clone ccsbBroadEn_11265 AXIN2 gene, encodes complete protein.
AF078165 - Homo sapiens conductin mRNA, complete cds.
AK025718 - Homo sapiens cDNA: FLJ22065 fis, clone HEP10566, highly similar to AF078165 Homo sapiens conductin mRNA.
AF205888 - Homo sapiens AXIN2 (AXIN2) mRNA, complete cds.
BC143244 - Homo sapiens axin 2, mRNA (cDNA clone MGC:176762 IMAGE:9051745), complete cds.
BC101533 - Homo sapiens axin 2, mRNA (cDNA clone MGC:126582 IMAGE:8069039), complete cds.
AK315303 - Homo sapiens cDNA, FLJ96328.
KJ897823 - Synthetic construct Homo sapiens clone ccsbBroadEn_07217 AXIN2 gene, encodes complete protein.
KR712155 - Synthetic construct Homo sapiens clone CCSBHm_00036288 AXIN2 (AXIN2) mRNA, encodes complete protein.
JD088262 - Sequence 69286 from Patent EP1572962.
JD172559 - Sequence 153583 from Patent EP1572962.
JD053741 - Sequence 34765 from Patent EP1572962.
AK308888 - Homo sapiens cDNA, FLJ98929.
JD073637 - Sequence 54661 from Patent EP1572962.
JD103701 - Sequence 84725 from Patent EP1572962.
JD439043 - Sequence 420067 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04310 - Wnt signaling pathway
hsa05200 - Pathways in cancer
hsa05210 - Colorectal cancer
hsa05213 - Endometrial cancer
hsa05217 - Basal cell carcinoma

Reactome (by CSHL, EBI, and GO)

Protein Q9Y2T1 (Reactome details) participates in the following event(s):

R-HSA-3640862 Tankyrase binds AXIN
R-HSA-4641134 SMURF2 binds AXIN
R-HSA-3640858 Tankyrase ADP-ribosylates AXIN
R-HSA-4641129 AXIN is ubiquitinated by SMURF2
R-HSA-3640844 RNF146 binds RibC-AXIN:TNKS complex
R-HSA-3640872 USP34 deubiquitinates AXIN1,AXIN2
R-HSA-3640861 RNF146 ubiquitinates ADP-ribosylated AXIN
R-HSA-4411364 Binding of TCF/LEF:CTNNB1 to target gene promoters
R-HSA-4641257 Degradation of AXIN
R-HSA-201722 Formation of the beta-catenin:TCF transactivating complex
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-5689880 Ub-specific processing proteases
R-HSA-195721 Signaling by WNT
R-HSA-5688426 Deubiquitination
R-HSA-162582 Signal Transduction
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: AXIN2_HUMAN, ENST00000307078.1, ENST00000307078.2, ENST00000307078.3, ENST00000307078.4, ENST00000307078.5, ENST00000307078.6, ENST00000307078.7, ENST00000307078.8, ENST00000307078.9, NM_004655, Q3MJ88, Q9H3M6, Q9UH84, Q9Y2T1, uc002jfi.1, uc002jfi.2, uc002jfi.3, uc002jfi.4, uc002jfi.5
UCSC ID: ENST00000307078.10
RefSeq Accession: NM_004655
Protein: Q9Y2T1 (aka AXIN2_HUMAN)
CCDS: CCDS11662.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.