Human Gene ENPP7 (ENST00000328313.10) from GENCODE V44
  Description: Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 7 (ENPP7), mRNA. (from RefSeq NM_178543)
RefSeq Summary (NM_178543): The protein encoded by this gene is an intestinal alkaline sphingomyelin phosphodiesterase that converts sphingomyelin to ceramide and phosphocholine. The encoded protein is anchored in the cell membrane, and it may function to protect the intestinal mucosa from inflammation and tumorigenesis. This protein is glycosylated and also exhibits lysophosphatidylcholine hydrolase activity. [provided by RefSeq, Oct 2016].
Gencode Transcript: ENST00000328313.10
Gencode Gene: ENSG00000182156.10
Transcript (Including UTRs)
   Position: hg38 chr17:79,730,943-79,742,219 Size: 11,277 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg38 chr17:79,731,140-79,738,046 Size: 6,907 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:79,730,943-79,742,219)mRNA (may differ from genome)Protein (458 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ENPP7_HUMAN
DESCRIPTION: RecName: Full=Ectonucleotide pyrophosphatase/phosphodiesterase family member 7; Short=E-NPP 7; Short=NPP-7; EC=3.1.4.12; AltName: Full=Alkaline sphingomyelin phosphodiesterase; AltName: Full=Intestinal alkaline sphingomyelinase; Short=Alk-SMase; Flags: Precursor;
FUNCTION: Converts sphingomyelin to ceramide. Also has phospholipase C activity toward palmitoyl lyso-phosphocholine. Does not appear to have nucleotide pyrophosphatase activity.
CATALYTIC ACTIVITY: Sphingomyelin + H(2)O = N-acylsphingosine + phosphocholine.
ENZYME REGULATION: Inhibited in a dose dependent manner by ATP, imidazole, orthovanadate and zinc ion. Not inhibited by ADP, AMP and EDTA.
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (Potential). Note=Localized at the surface of the microvillar membrane in small intestine enterocytes, and in endosome-like structures situated beneath the microvillar membrane, and in Golgi complex.
TISSUE SPECIFICITY: Detected in the colon (at protein level). Expressed in the duodenum, jejunum and liver and at low levels in the ileum. Expression was very low in the esophagus, stomach and colon.
PTM: N-glycosylated; required for activity and transport to the plasma membrane.
MISCELLANEOUS: Decreased levels of alkaline sphingomyelin phosphodiesterase may be associated with colon cancer.
SIMILARITY: Belongs to the nucleotide pyrophosphatase/phosphodiesterase family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/ENPP7ID44055ch17q25.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ENPP7
Diseases sorted by gene-association score: colorectal cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.29 RPKM in Liver
Total median expression: 4.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -84.90197-0.431 Picture PostScript Text
3' UTR -196.80442-0.445 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017849 - Alkaline_Pase-like_a/b/a
IPR017850 - Alkaline_phosphatase_core
IPR024873 - E-NPP
IPR002591 - Phosphodiest/P_Trfase

Pfam Domains:
PF01663 - Type I phosphodiesterase / nucleotide pyrophosphatase

ModBase Predicted Comparative 3D Structure on Q6UWV6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004767 sphingomyelin phosphodiesterase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity

Biological Process:
GO:0006684 sphingomyelin metabolic process
GO:0006685 sphingomyelin catabolic process
GO:0006687 glycosphingolipid metabolic process
GO:0008152 metabolic process
GO:0008156 negative regulation of DNA replication
GO:0008285 negative regulation of cell proliferation

Cellular Component:
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005902 microvillus
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK126250 - Homo sapiens cDNA FLJ44262 fis, clone TLIVE2002336, weakly similar to Mus musculus ectonucleotide pyrophosphatase/phosphodiesterase 5 (Enpp5).
AY230663 - Homo sapiens intestinal alkaline sphingomyelinase mRNA, complete cds.
BC041453 - Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 7, mRNA (cDNA clone MGC:50179 IMAGE:5186743), complete cds.
AY358622 - Homo sapiens clone DNA108700 RGLA3077 (UNQ3077) mRNA, complete cds.
KJ900615 - Synthetic construct Homo sapiens clone ccsbBroadEn_10009 ENPP7 gene, encodes complete protein.
AK128662 - Homo sapiens cDNA FLJ46822 fis, clone TSTOM2002682.
JD227728 - Sequence 208752 from Patent EP1572962.
JD173518 - Sequence 154542 from Patent EP1572962.
JD549581 - Sequence 530605 from Patent EP1572962.
JD545401 - Sequence 526425 from Patent EP1572962.
JD394924 - Sequence 375948 from Patent EP1572962.
JD423673 - Sequence 404697 from Patent EP1572962.
JD400063 - Sequence 381087 from Patent EP1572962.
JD156048 - Sequence 137072 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00600 - Sphingolipid metabolism
hsa01100 - Metabolic pathways

BioCyc Knowledge Library
PWY-7277 - sphingolipid biosynthesis (mammals)
PWY3DJ-11281 - sphingomyelin metabolism

Reactome (by CSHL, EBI, and GO)

Protein Q6UWV6 (Reactome details) participates in the following event(s):

R-HSA-1640164 Ectonucleotide pyrophosphatase/phosphodiesterase 7 (ENPP7) hydrolyses sphingomyelin
R-HSA-1660662 Glycosphingolipid metabolism
R-HSA-428157 Sphingolipid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENPP7_HUMAN, ENST00000328313.1, ENST00000328313.2, ENST00000328313.3, ENST00000328313.4, ENST00000328313.5, ENST00000328313.6, ENST00000328313.7, ENST00000328313.8, ENST00000328313.9, NM_178543, Q6UWV6, Q6ZTS5, Q8IUS8, uc002jxa.1, uc002jxa.2, uc002jxa.3, uc002jxa.4, uc002jxa.5, uc002jxa.6, UNQ3077/PRO9912
UCSC ID: ENST00000328313.10
RefSeq Accession: NM_178543
Protein: Q6UWV6 (aka ENPP7_HUMAN)
CCDS: CCDS11763.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.