Human Gene ADAMTS10 (ENST00000597188.6) from GENCODE V44
  Description: Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 10 (ADAMTS10), transcript variant 1, mRNA. (from RefSeq NM_030957)
RefSeq Summary (NM_030957): This gene belongs to the ADAMTS (a disintegrin and metalloproteinase domain with thrombospondin type-1 motifs) family of zinc-dependent proteases. ADAMTS proteases are complex secreted enzymes containing a prometalloprotease domain of the reprolysin type attached to an ancillary domain with a highly conserved structure that includes at least one thrombospondin type 1 repeat. They have been demonstrated to have important roles in connective tissue organization, coagulation, inflammation, arthritis, angiogenesis and cell migration. The product of this gene plays a major role in growth and in skin, lens, and heart development. It is also a candidate gene for autosomal recessive Weill-Marchesani syndrome. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000597188.6
Gencode Gene: ENSG00000142303.14
Transcript (Including UTRs)
   Position: hg38 chr19:8,580,240-8,610,715 Size: 30,476 Total Exon Count: 26 Strand: -
Coding Region
   Position: hg38 chr19:8,580,893-8,605,710 Size: 24,818 Coding Exon Count: 24 

Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesGeneReviews
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:8,580,240-8,610,715)mRNA (may differ from genome)Protein (1103 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGImyGene2
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ADAMTS10
Diseases sorted by gene-association score: weill-marchesani syndrome 1, recessive* (1200), weill-marchesani syndrome* (290), adamts10-related weill-marchesani syndrome* (100), tracheal stenosis (7), tracheal disease (6), peters-plus syndrome (5), myopia (4), glaucoma 1, open angle, e (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.61 RPKM in Artery - Aorta
Total median expression: 349.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -122.70286-0.429 Picture PostScript Text
3' UTR -321.30653-0.492 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK131414 - Homo sapiens cDNA FLJ16524 fis, clone OCBBF2003327, moderately similar to ADAM-TS 6 precursor (EC 3.4.24.-).
AF163762 - Homo sapiens zinc metalloendopeptidase (ADAMTS10) mRNA, partial cds.
JD435685 - Sequence 416709 from Patent EP1572962.
JD451861 - Sequence 432885 from Patent EP1572962.
BC169218 - Synthetic construct Homo sapiens clone IMAGE:9093276 ADAM metallopeptidase with thrombospondin type 1 motif, 10 preproprotein (ADAMTS10) gene, partial cds.
BC029308 - Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 10, mRNA (cDNA clone IMAGE:5177054).
AB209515 - Homo sapiens mRNA for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 preproprotein variant protein.
JD408927 - Sequence 389951 from Patent EP1572962.
JD079014 - Sequence 60038 from Patent EP1572962.
JD445524 - Sequence 426548 from Patent EP1572962.
JD209929 - Sequence 190953 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0A0MQW6, ENST00000597188.1, ENST00000597188.2, ENST00000597188.3, ENST00000597188.4, ENST00000597188.5, NM_030957, uc002mkj.1, uc002mkj.2, uc002mkj.3, uc002mkj.4
UCSC ID: ENST00000597188.6
RefSeq Accession: NM_030957
CCDS: CCDS12206.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ADAMTS10:
weill-ms (Weill-Marchesani Syndrome)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.