Human Gene TRIR (ENST00000242784.5) from GENCODE V44
Description: Homo sapiens telomerase RNA component interacting RNase (TRIR), transcript variant 1, mRNA. (from RefSeq NM_024038)
Gencode Transcript: ENST00000242784.5
Gencode Gene: ENSG00000123144.11
Transcript (Including UTRs)
Position: hg38 chr19:12,730,640-12,734,684 Size: 4,045 Total Exon Count: 3 Strand: -
Coding Region
Position: hg38 chr19:12,730,961-12,734,657 Size: 3,697 Coding Exon Count: 3
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Primer design for this transcript
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q9BQ61
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
LF208191 - JP 2014500723-A/15694: Polycomb-Associated Non-Coding RNAs.MA443768 - JP 2018138019-A/15694: Polycomb-Associated Non-Coding RNAs.BC004533 - Homo sapiens chromosome 19 open reading frame 43, mRNA (cDNA clone MGC:2964 IMAGE:3139656), complete cds.BC015347 - Homo sapiens chromosome 19 open reading frame 43, mRNA (cDNA clone MGC:21372 IMAGE:4156774), complete cds.AK027588 - Homo sapiens cDNA FLJ14682 fis, clone NT2RP2004463.BC000216 - Homo sapiens chromosome 19 open reading frame 43, mRNA (cDNA clone MGC:2803 IMAGE:2961319), complete cds.BC001840 - Homo sapiens cDNA clone IMAGE:2961319, **** WARNING: chimeric clone ****.AF061732 - Homo sapiens clone 017d02 My029 protein mRNA, complete cds.JD508250 - Sequence 489274 from Patent EP1572962.JD150395 - Sequence 131419 from Patent EP1572962.LF373375 - JP 2014500723-A/180878: Polycomb-Associated Non-Coding RNAs.MA608952 - JP 2018138019-A/180878: Polycomb-Associated Non-Coding RNAs.JD261343 - Sequence 242367 from Patent EP1572962.JD164077 - Sequence 145101 from Patent EP1572962.JD389641 - Sequence 370665 from Patent EP1572962.JD389265 - Sequence 370289 from Patent EP1572962.LF373373 - JP 2014500723-A/180876: Polycomb-Associated Non-Coding RNAs.MA608950 - JP 2018138019-A/180876: Polycomb-Associated Non-Coding RNAs.JD138347 - Sequence 119371 from Patent EP1572962.JD202738 - Sequence 183762 from Patent EP1572962.AK315754 - Homo sapiens cDNA, FLJ96865.KJ899510 - Synthetic construct Homo sapiens clone ccsbBroadEn_08904 C19orf43 gene, encodes complete protein.DQ891449 - Synthetic construct clone IMAGE:100004079; FLH177049.01X; RZPDo839C06124D chromosome 19 open reading frame 43 (C19orf43) gene, encodes complete protein.DQ894628 - Synthetic construct Homo sapiens clone IMAGE:100009088; FLH177046.01L; RZPDo839C06123D chromosome 19 open reading frame 43 (C19orf43) gene, encodes complete protein.DQ592759 - Homo sapiens piRNA piR-59871, complete sequence.LF373371 - JP 2014500723-A/180874: Polycomb-Associated Non-Coding RNAs.MA608948 - JP 2018138019-A/180874: Polycomb-Associated Non-Coding RNAs.CU677275 - Synthetic construct Homo sapiens gateway clone IMAGE:100017965 5' read C19orf43 mRNA.BC040846 - Homo sapiens chromosome 19 open reading frame 43, mRNA (cDNA clone IMAGE:4394494).LF373362 - JP 2014500723-A/180865: Polycomb-Associated Non-Coding RNAs.MA608939 - JP 2018138019-A/180865: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: C19orf43, CS043_HUMAN, ENST00000242784.1, ENST00000242784.2, ENST00000242784.3, ENST00000242784.4, NM_024038, Q9BQ61, uc002muu.1, uc002muu.2, uc002muu.3, uc002muu.4, uc002muu.5UCSC ID: ENST00000242784.5RefSeq Accession: NM_024038
Protein: Q9BQ61
(aka CS043_HUMAN)
CCDS: CCDS12279.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.