Human Gene CIAO1 (ENST00000488633.2) from GENCODE V44
  Description: Homo sapiens cytosolic iron-sulfur assembly component 1 (CIAO1), mRNA. (from RefSeq NM_004804)
Gencode Transcript: ENST00000488633.2
Gencode Gene: ENSG00000144021.3
Transcript (Including UTRs)
   Position: hg38 chr2:96,266,225-96,274,173 Size: 7,949 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chr2:96,266,351-96,271,351 Size: 5,001 Coding Exon Count: 7 

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Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:96,266,225-96,274,173)mRNA (may differ from genome)Protein (339 aa)
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-  Comments and Description Text from UniProtKB
  ID: CIAO1_HUMAN
DESCRIPTION: RecName: Full=Probable cytosolic iron-sulfur protein assembly protein CIAO1; AltName: Full=WD repeat-containing protein 39;
FUNCTION: Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Seems to specifically modulate the transactivation activity of WT1. As part of the mitotic spindle-associated MMXD complex it may play a role in chromosome segregation.
SUBUNIT: Component of the CIA complex. Component of the MMXD complex, which includes CIAO1, ERCC2, FAM96B, MMS19 and SLC25A5. Interacts with WT1. Interacts with FAM96A.
MISCELLANEOUS: 'Ciao' means 'bridge' in Chinese.
SIMILARITY: Belongs to the WD repeat CIA1 family.
SIMILARITY: Contains 7 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.65 RPKM in Adrenal Gland
Total median expression: 949.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.90126-0.467 Picture PostScript Text
3' UTR -846.702822-0.300 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3FM0 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O76071
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
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Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence
AlignmentAlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007059 chromosome segregation
GO:0008284 positive regulation of cell proliferation
GO:0016226 iron-sulfur cluster assembly

Cellular Component:
GO:0071817 MMXD complex
GO:0097361 CIA complex


-  Descriptions from all associated GenBank mRNAs
  AK098406 - Homo sapiens cDNA FLJ25540 fis, clone CBR09638.
LF205875 - JP 2014500723-A/13378: Polycomb-Associated Non-Coding RNAs.
MA441452 - JP 2018138019-A/13378: Polycomb-Associated Non-Coding RNAs.
U63810 - Homo sapiens WD40 protein Ciao 1 mRNA, complete cds.
AK223257 - Homo sapiens mRNA for WD40 protein Ciao1 variant, clone: STM06949.
AK315568 - Homo sapiens cDNA, FLJ96640, highly similar to Homo sapiens WD40 protein Ciao1 (CIAO1), mRNA.
AK056423 - Homo sapiens cDNA FLJ31861 fis, clone NT2RP7001319.
BC032812 - Homo sapiens cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:45274 IMAGE:5219740), complete cds.
EF011618 - Homo sapiens CDW8/WDR39 mRNA, complete cds.
BC001395 - Homo sapiens cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae), mRNA (cDNA clone MGC:1983 IMAGE:3050587), complete cds.
AK299503 - Homo sapiens cDNA FLJ51287 complete cds, highly similar to WD repeat protein 39.
CU674690 - Synthetic construct Homo sapiens gateway clone IMAGE:100019003 5' read CIAO1 mRNA.
AB463559 - Synthetic construct DNA, clone: pF1KB3413, Homo sapiens CIAO1 gene for cytosolic iron-sulfur protein assembly 1 homolog, without stop codon, in Flexi system.
CR456802 - Homo sapiens full open reading frame cDNA clone RZPDo834A1118D for gene CIAO1, WD40 protein Ciao1; complete cds, incl. stopcodon.
EU176373 - Synthetic construct Homo sapiens clone IMAGE:100006594; FLH263924.01X; RZPDo839E11246D cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) (CIAO1) gene, encodes complete protein.
EU176710 - Synthetic construct Homo sapiens clone IMAGE:100011620; FLH263908.01L; RZPDo839E03246D cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae) (CIAO1) gene, encodes complete protein.
LF349347 - JP 2014500723-A/156850: Polycomb-Associated Non-Coding RNAs.
MA584924 - JP 2018138019-A/156850: Polycomb-Associated Non-Coding RNAs.
DQ582357 - Homo sapiens piRNA piR-32469, complete sequence.
LF349346 - JP 2014500723-A/156849: Polycomb-Associated Non-Coding RNAs.
MA584923 - JP 2018138019-A/156849: Polycomb-Associated Non-Coding RNAs.
DQ601372 - Homo sapiens piRNA piR-39438, complete sequence.
LF349345 - JP 2014500723-A/156848: Polycomb-Associated Non-Coding RNAs.
MA584922 - JP 2018138019-A/156848: Polycomb-Associated Non-Coding RNAs.
AK124703 - Homo sapiens cDNA FLJ42713 fis, clone BRAMY3008088.
AF086118 - Homo sapiens full length insert cDNA clone ZA72E02.
AK092687 - Homo sapiens cDNA FLJ35368 fis, clone SKMUS2001454.
JD482070 - Sequence 463094 from Patent EP1572962.
JD141822 - Sequence 122846 from Patent EP1572962.
JD340910 - Sequence 321934 from Patent EP1572962.
JD289067 - Sequence 270091 from Patent EP1572962.
JD069175 - Sequence 50199 from Patent EP1572962.
JD069176 - Sequence 50200 from Patent EP1572962.
JD452572 - Sequence 433596 from Patent EP1572962.
JD149191 - Sequence 130215 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O76071 (Reactome details) participates in the following event(s):

R-HSA-2564830 Cytosolic iron-sulfur cluster assembly
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A0MNN9, CIAO1_HUMAN, ENST00000488633.1, NM_004804, O76071, Q53FM5, uc002svs.1, uc002svs.2, uc002svs.3, uc002svs.4, uc002svs.5, WDR39
UCSC ID: ENST00000488633.2
RefSeq Accession: NM_004804
Protein: O76071 (aka CIAO1_HUMAN or CIA1_HUMAN)
CCDS: CCDS2019.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.