Human Gene PRNT (ENST00000423718.2) from GENCODE V44
  Description: Homo sapiens prion locus lncRNA, testis expressed (PRNT), transcript variant 2, long non-coding RNA. (from RefSeq NR_024268)
Gencode Transcript: ENST00000423718.2
Gencode Gene: ENSG00000180259.10
Transcript (Including UTRs)
   Position: hg38 chr20:4,731,282-4,740,668 Size: 9,387 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:4,731,282-4,740,668)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGencodeHGNCLynx
MalacardsPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRNT
Diseases sorted by gene-association score: venezuelan hemorrhagic fever (4), variola major (3), creutzfeldt-jakob disease (3), korean hemorrhagic fever (2)

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.74 RPKM in Testis
Total median expression: 7.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AJ427539 - Homo sapiens mRNA for putative M8 protein, isoform 2.
AJ427540 - Homo sapiens mRNA for putative M8 protein, isoform 3.
AL137296 - Homo sapiens mRNA; cDNA DKFZp434M0416 (from clone DKFZp434M0416).
JD555814 - Sequence 536838 from Patent EP1572962.
JD301755 - Sequence 282779 from Patent EP1572962.
BC137389 - Homo sapiens prion protein (testis specific), mRNA (cDNA clone IMAGE:9021387).
BC137390 - Homo sapiens prion protein (testis specific), mRNA (cDNA clone IMAGE:9021388).
JD038626 - Sequence 19650 from Patent EP1572962.
JD213631 - Sequence 194655 from Patent EP1572962.
JD553118 - Sequence 534142 from Patent EP1572962.
JD436759 - Sequence 417783 from Patent EP1572962.
JD486257 - Sequence 467281 from Patent EP1572962.
JD064417 - Sequence 45441 from Patent EP1572962.
JD342615 - Sequence 323639 from Patent EP1572962.
JD555950 - Sequence 536974 from Patent EP1572962.
JD238580 - Sequence 219604 from Patent EP1572962.
KJ901162 - Synthetic construct Homo sapiens clone ccsbBroadEn_10556 PRNT gene, encodes complete protein.
JD115226 - Sequence 96250 from Patent EP1572962.
JD250459 - Sequence 231483 from Patent EP1572962.
JD564927 - Sequence 545951 from Patent EP1572962.
JD102712 - Sequence 83736 from Patent EP1572962.
JD404476 - Sequence 385500 from Patent EP1572962.
JD360554 - Sequence 341578 from Patent EP1572962.
JD251440 - Sequence 232464 from Patent EP1572962.
JD086613 - Sequence 67637 from Patent EP1572962.
JD040960 - Sequence 21984 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000423718.1, NR_024268, uc002wlb.1, uc002wlb.2, uc002wlb.3, uc002wlb.4, uc002wlb.5
UCSC ID: ENST00000423718.2
RefSeq Accession: NR_024268

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.