Human Gene SIK1 (ENST00000270162.8) from GENCODE V44
  Description: Homo sapiens salt inducible kinase 1 (SIK1), mRNA. (from RefSeq NM_173354)
Gencode Transcript: ENST00000270162.8
Gencode Gene: ENSG00000142178.9
Transcript (Including UTRs)
   Position: hg38 chr21:43,414,483-43,427,131 Size: 12,649 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg38 chr21:43,416,742-43,426,178 Size: 9,437 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:43,414,483-43,427,131)mRNA (may differ from genome)Protein (783 aa)
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-  Comments and Description Text from UniProtKB
  ID: SIK1_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase SIK1; EC=2.7.11.1; AltName: Full=Salt-inducible kinase 1; Short=SIK-1; AltName: Full=Serine/threonine-protein kinase SNF1-like kinase 1; Short=Serine/threonine-protein kinase SNF1LK;
FUNCTION: Serine/threonine-protein kinase involved in various processes such as cell cycle regulation, gluconeogenesis and lipogenesis regulation, muscle growth and differentiation and tumor suppression. Phosphorylates HDAC4, HDAC5, PPME1, SREBF1, TORC1/CRTC1 and TORC2/CRTC2. Acts as a tumor suppressor and plays a key role in p53/TP53-dependent anoikis, a type of apoptosis triggered by cell detachment: required for phosphorylation of p53/TP53 in response to loss of adhesion and is able to suppress metastasis. Part of a sodium-sensing signaling network, probably by mediating phosphorylation of PPME1: following increases in intracellular sodium, SIK1 is activated by CaMK1 and phosphorylates PPME1 subunit of protein phosphatase 2A (PP2A), leading to dephosphorylation of sodium/potassium-transporting ATPase ATP1A1 and subsequent increase activity of ATP1A1. Acts as a regulator of muscle cells by phosphorylating and inhibiting class II histone deacetylases HDAC4 and HDAC5, leading to promote expression of MEF2 target genes in myocytes. Also required during cardiomyogenesis by regulating the exit of cardiomyoblasts from the cell cycle via down-regulation of CDKN1C/p57Kip2. Acts as a regulator of hepatic gluconeogenesis by phosphorylating and repressing the CREB-specific coactivators TORC1/CRTC1 and TORC2/CRTC2, leading to inhibit CREB activity. Also regulates hepatic lipogenesis by phosphorylating and inhibiting SREBF1.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium (By similarity).
ENZYME REGULATION: Activated by phosphorylation on Thr-182. Also activated by phosphorylation on Thr-322 in response to increases in intracellular sodium in parallel with elevations in intracellular calcium through the reversible sodium/calcium exchanger.
SUBUNIT: Interacts with ATP1A1 (By similarity). Interacts (when phosphorylated on Thr-182 and Ser-186) with YWHAZ.
INTERACTION: P63104:YWHAZ; NbExp=4; IntAct=EBI-1181640, EBI-347088;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Following ACTH (adrenocorticotropic hormone) treatment and subsequent phosphorylation by PKA, translocates to the cytoplasm, where it binds to YWHAZ.
DOMAIN: The RK-rich region determines the subcellular location (By similarity).
PTM: Phosphorylated at Thr-182 by STK11/LKB1 in complex with STE20-related adapter-alpha (STRADA) pseudo kinase and CAB39, leading to its activation. Phosphorylation at Thr-182 promotes autophosphorylation at Ser-186, which is required for sustained activity. Autophosphorylation at Ser-186 is maintained by sequential phosphorylation at Thr-182 by GSK3-beta. GSK3-beta cannot initiate phosphorylation at Thr-182, it can only maintain it. Phosphorylation at Ser-575 by PKA promotes translocation to the cytoplasm. Phosphorylation at Thr-322 by CaMK1 following intracellular sodium concentration leads to activation. Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Note=Defects in SIK1 may be associated with some cancers, such as breast cancers. Loss of SIK1 correlates with poor patient outcome in breast cancers (PubMed:19622832).
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. AMPK subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SIMILARITY: Contains 1 UBA domain.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: SIK1
Diseases sorted by gene-association score: epileptic encephalopathy, early infantile, 30* (1330), early myoclonic encephalopathy* (247), epileptic encephalopathy, early infantile, 15* (98), west syndrome* (82), bone lymphoma (7), cervical polyp (7), tenosynovitis (7), somatization disorder (6), acquired thrombocytopenia (6), pleomorphic lipoma (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 220.54 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 1319.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.00136-0.500 Picture PostScript Text
3' UTR -788.302259-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS
IPR017090 - Ser/Thr_kinase_SIK1/2
IPR015940 - UBA/transl_elong_EF1B_N_euk

Pfam Domains:
PF00069 - Protein kinase domain

ModBase Predicted Comparative 3D Structure on P57059
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008140 cAMP response element binding protein binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0019901 protein kinase binding
GO:0046872 metal ion binding
GO:0071889 14-3-3 protein binding

Biological Process:
GO:0002028 regulation of sodium ion transport
GO:0006468 protein phosphorylation
GO:0007049 cell cycle
GO:0007275 multicellular organism development
GO:0007346 regulation of mitotic cell cycle
GO:0010830 regulation of myotube differentiation
GO:0010868 negative regulation of triglyceride biosynthetic process
GO:0016310 phosphorylation
GO:0030154 cell differentiation
GO:0032792 negative regulation of CREB transcription factor activity
GO:0032870 cellular response to hormone stimulus
GO:0035556 intracellular signal transduction
GO:0043153 entrainment of circadian clock by photoperiod
GO:0045595 regulation of cell differentiation
GO:0045721 negative regulation of gluconeogenesis
GO:0046777 protein autophosphorylation
GO:0048511 rhythmic process
GO:0055007 cardiac muscle cell differentiation
GO:2000210 positive regulation of anoikis

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AB047786 - Homo sapiens SNF1LK mRNA for serine/threonine protein kinase, complete cds.
AK131076 - Homo sapiens mRNA for FLJ00263 protein.
BC038504 - Homo sapiens salt-inducible kinase 1, mRNA (cDNA clone MGC:33415 IMAGE:4831049), complete cds.
JD058925 - Sequence 39949 from Patent EP1572962.
JD102284 - Sequence 83308 from Patent EP1572962.
JD118936 - Sequence 99960 from Patent EP1572962.
JD384633 - Sequence 365657 from Patent EP1572962.
JD437182 - Sequence 418206 from Patent EP1572962.
JD159866 - Sequence 140890 from Patent EP1572962.
JD543736 - Sequence 524760 from Patent EP1572962.
JD128482 - Sequence 109506 from Patent EP1572962.
JD180008 - Sequence 161032 from Patent EP1572962.
JD431260 - Sequence 412284 from Patent EP1572962.
JD226477 - Sequence 207501 from Patent EP1572962.
JD389820 - Sequence 370844 from Patent EP1572962.
JD044677 - Sequence 25701 from Patent EP1572962.
JD425749 - Sequence 406773 from Patent EP1572962.
JD368070 - Sequence 349094 from Patent EP1572962.
JD370144 - Sequence 351168 from Patent EP1572962.
JD248552 - Sequence 229576 from Patent EP1572962.
JD126760 - Sequence 107784 from Patent EP1572962.
JD389148 - Sequence 370172 from Patent EP1572962.
JD451145 - Sequence 432169 from Patent EP1572962.
JD523566 - Sequence 504590 from Patent EP1572962.
JD344881 - Sequence 325905 from Patent EP1572962.
JD507110 - Sequence 488134 from Patent EP1572962.
JD170659 - Sequence 151683 from Patent EP1572962.
JD469219 - Sequence 450243 from Patent EP1572962.
JD483287 - Sequence 464311 from Patent EP1572962.
JD076961 - Sequence 57985 from Patent EP1572962.
JD225648 - Sequence 206672 from Patent EP1572962.
JD060956 - Sequence 41980 from Patent EP1572962.
JD560237 - Sequence 541261 from Patent EP1572962.
JD511066 - Sequence 492090 from Patent EP1572962.
JD186467 - Sequence 167491 from Patent EP1572962.
JD109934 - Sequence 90958 from Patent EP1572962.
JD358392 - Sequence 339416 from Patent EP1572962.
JD258231 - Sequence 239255 from Patent EP1572962.
JD311108 - Sequence 292132 from Patent EP1572962.
JD184405 - Sequence 165429 from Patent EP1572962.
JD214331 - Sequence 195355 from Patent EP1572962.
JD077137 - Sequence 58161 from Patent EP1572962.
JD067351 - Sequence 48375 from Patent EP1572962.
JD566147 - Sequence 547171 from Patent EP1572962.
JD241750 - Sequence 222774 from Patent EP1572962.
KJ900271 - Synthetic construct Homo sapiens clone ccsbBroadEn_09665 SIK1 gene, encodes complete protein.
KJ905625 - Synthetic construct Homo sapiens clone ccsbBroadEn_15264 SIK1 gene, encodes complete protein.
DQ892466 - Synthetic construct clone IMAGE:100005096; FLH186581.01X; RZPDo839G0171D SNF1-like kinase (SNF1LK) gene, encodes complete protein.
DQ895679 - Synthetic construct Homo sapiens clone IMAGE:100010139; FLH186577.01L; RZPDo839G0161D SNF1-like kinase (SNF1LK) gene, encodes complete protein.
CU691580 - Synthetic construct Homo sapiens gateway clone IMAGE:100020082 5' read SNF1LK mRNA.
JD186847 - Sequence 167871 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NC84, ENST00000270162.1, ENST00000270162.2, ENST00000270162.3, ENST00000270162.4, ENST00000270162.5, ENST00000270162.6, ENST00000270162.7, NM_173354, P57059, Q5R2V5, Q6ZNL8, Q86YJ2, SIK, SIK1_HUMAN, SNF1LK, uc002zdf.1, uc002zdf.2, uc002zdf.3, uc002zdf.4, uc002zdf.5, uc002zdf.6
UCSC ID: ENST00000270162.8
RefSeq Accession: NM_001320643
Protein: P57059 (aka SIK1_HUMAN)
CCDS: CCDS33575.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.