Human Gene ST13 (ENST00000216218.8) from GENCODE V44
  Description: Homo sapiens ST13 Hsp70 interacting protein (ST13), transcript variant 1, mRNA. (from RefSeq NM_003932)
RefSeq Summary (NM_003932): The protein encoded by this gene is an adaptor protein that mediates the association of the heat shock proteins HSP70 and HSP90. This protein has been shown to be involved in the assembly process of glucocorticoid receptor, which requires the assistance of multiple molecular chaperones. The expression of this gene is reported to be downregulated in colorectal carcinoma tissue suggesting that it is a candidate tumor suppressor gene. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jun 2013].
Gencode Transcript: ENST00000216218.8
Gencode Gene: ENSG00000100380.15
Transcript (Including UTRs)
   Position: hg38 chr22:40,824,535-40,856,639 Size: 32,105 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg38 chr22:40,826,538-40,856,540 Size: 30,003 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:40,824,535-40,856,639)mRNA (may differ from genome)Protein (369 aa)
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-  Comments and Description Text from UniProtKB
  ID: F10A1_HUMAN
DESCRIPTION: RecName: Full=Hsc70-interacting protein; Short=Hip; AltName: Full=Aging-associated protein 2; AltName: Full=Progesterone receptor-associated p48 protein; AltName: Full=Protein FAM10A1; AltName: Full=Putative tumor suppressor ST13; AltName: Full=Renal carcinoma antigen NY-REN-33; AltName: Full=Suppression of tumorigenicity 13 protein;
FUNCTION: One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins (By similarity).
SUBUNIT: Homotetramer. Interacts with HSC70 as well as DNAJ homologs and HSP90 (By similarity). Interacts (via the C-terminus 303- 319 AA) with GRK5.
INTERACTION: P02649:APOE; NbExp=3; IntAct=EBI-357285, EBI-1222467; P29474:NOS3; NbExp=3; IntAct=EBI-357285, EBI-1391623; P49768:PSEN1; NbExp=3; IntAct=EBI-357285, EBI-297277;
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
SIMILARITY: Belongs to the FAM10 family.
SIMILARITY: Contains 1 STI1 domain.
SIMILARITY: Contains 3 TPR repeats.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 197.44 RPKM in Ovary
Total median expression: 3216.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.3099-0.326 Picture PostScript Text
3' UTR -457.802003-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006636 - STI1_HS-bd
IPR001440 - TPR-1
IPR013026 - TPR-contain_dom
IPR011990 - TPR-like_helical
IPR013105 - TPR_2
IPR019734 - TPR_repeat

Pfam Domains:
PF00515 - Tetratricopeptide repeat
PF07719 - Tetratricopeptide repeat

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1UZS - Model


ModBase Predicted Comparative 3D Structure on P50502
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019904 protein domain specific binding
GO:0030544 Hsp70 protein binding
GO:0030674 protein binding, bridging
GO:0032564 dATP binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0046983 protein dimerization activity
GO:0051082 unfolded protein binding
GO:0051087 chaperone binding

Biological Process:
GO:0006457 protein folding
GO:0051085 chaperone mediated protein folding requiring cofactor
GO:0051260 protein homooligomerization
GO:0051289 protein homotetramerization
GO:0061084 negative regulation of protein refolding

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0032991 macromolecular complex
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC015317 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone IMAGE:4425762), complete cds.
AF116650 - Homo sapiens PRO0786 mRNA, complete cds.
AY513286 - Homo sapiens aging-associated protein 2 (AAG2) mRNA, complete cds.
U17714 - Homo sapiens putative tumor suppressor ST13 (ST13) mRNA, complete cds.
AY826824 - Homo sapiens aging-associated protein 14a mRNA, complete cds.
AY826825 - Homo sapiens aging-associated protein 14b mRNA, complete cds.
BC052982 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone MGC:60082 IMAGE:6046993), complete cds.
HM005646 - Homo sapiens clone HTL-S-233m testis secretory sperm-binding protein Li 233m mRNA, complete cds.
KJ901767 - Synthetic construct Homo sapiens clone ccsbBroadEn_11161 ST13 gene, encodes complete protein.
JD549405 - Sequence 530429 from Patent EP1572962.
JD206546 - Sequence 187570 from Patent EP1572962.
JD075257 - Sequence 56281 from Patent EP1572962.
JD434154 - Sequence 415178 from Patent EP1572962.
JD116278 - Sequence 97302 from Patent EP1572962.
JD090293 - Sequence 71317 from Patent EP1572962.
JD127353 - Sequence 108377 from Patent EP1572962.
JD195261 - Sequence 176285 from Patent EP1572962.
JD554418 - Sequence 535442 from Patent EP1572962.
JD239687 - Sequence 220711 from Patent EP1572962.
JD556737 - Sequence 537761 from Patent EP1572962.
JD305067 - Sequence 286091 from Patent EP1572962.
JD540074 - Sequence 521098 from Patent EP1572962.
JD558131 - Sequence 539155 from Patent EP1572962.
AK130770 - Homo sapiens cDNA FLJ27260 fis, clone TMS00129, highly similar to Hsc70-interacting protein.
BC071629 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone MGC:87761 IMAGE:4536907), complete cds.
U28918 - Homo sapiens p48 mRNA, complete cds.
JD350613 - Sequence 331637 from Patent EP1572962.
JD378935 - Sequence 359959 from Patent EP1572962.
JD390698 - Sequence 371722 from Patent EP1572962.
JD519239 - Sequence 500263 from Patent EP1572962.
AK316155 - Homo sapiens cDNA, FLJ79054 complete cds, highly similar to Hsc70-interacting protein.
AK303530 - Homo sapiens cDNA FLJ53687 complete cds, highly similar to Hsc70-interacting protein.
BC107148 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone MGC:129952 IMAGE:40031944), complete cds.
BC139724 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone MGC:129951 IMAGE:40031942), complete cds.
CR456586 - Homo sapiens ST13 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.ST13.V4).
BC107120 - Homo sapiens cDNA clone IMAGE:40023697, containing frame-shift errors.
CU013186 - Homo sapiens ST13, mRNA (cDNA clone IMAGE:100000539), complete cds, with stop codon, in Gateway system.
AK312399 - Homo sapiens cDNA, FLJ92731.
CU013474 - Homo sapiens ST13, mRNA (cDNA clone IMAGE:100000443), complete cds, without stop codon, in Gateway system.
JD169153 - Sequence 150177 from Patent EP1572962.
JD446913 - Sequence 427937 from Patent EP1572962.
BC121107 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone IMAGE:40120334), partial cds.
BC121108 - Homo sapiens suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein), mRNA (cDNA clone IMAGE:40120335), partial cds.
JD088106 - Sequence 69130 from Patent EP1572962.
JD348820 - Sequence 329844 from Patent EP1572962.
JD301854 - Sequence 282878 from Patent EP1572962.
JD267766 - Sequence 248790 from Patent EP1572962.
JD316844 - Sequence 297868 from Patent EP1572962.
BC101206 - Homo sapiens family with sequence similarity 10, member A7 (pseudogene), mRNA (cDNA clone IMAGE:40021866).
BC101207 - Homo sapiens family with sequence similarity 10, member A7 (pseudogene), mRNA (cDNA clone IMAGE:40021869).
BC101208 - Homo sapiens family with sequence similarity 10, member A7 (pseudogene), mRNA (cDNA clone IMAGE:40021870).
JD309909 - Sequence 290933 from Patent EP1572962.
JD512969 - Sequence 493993 from Patent EP1572962.
JD113729 - Sequence 94753 from Patent EP1572962.
JD362685 - Sequence 343709 from Patent EP1572962.
JD170724 - Sequence 151748 from Patent EP1572962.
JD046675 - Sequence 27699 from Patent EP1572962.
JD410897 - Sequence 391921 from Patent EP1572962.
JD303943 - Sequence 284967 from Patent EP1572962.
JD219163 - Sequence 200187 from Patent EP1572962.
DQ569999 - Homo sapiens piRNA piR-30111, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: AAG2, ENST00000216218.1, ENST00000216218.2, ENST00000216218.3, ENST00000216218.4, ENST00000216218.5, ENST00000216218.6, ENST00000216218.7, F10A1_HUMAN, FAM10A1, HIP, NM_003932, O14999, P50502, Q2TU77, SNC6, uc003aze.1, uc003aze.2, uc003aze.3, uc003aze.4, uc003aze.5, uc003aze.6
UCSC ID: ENST00000216218.8
RefSeq Accession: NM_003932
Protein: P50502 (aka F10A1_HUMAN)
CCDS: CCDS14006.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.