Human Gene PNRC1 (ENST00000336032.4) from GENCODE V44
  Description: Homo sapiens proline rich nuclear receptor coactivator 1 (PNRC1), mRNA. (from RefSeq NM_006813)
Gencode Transcript: ENST00000336032.4
Gencode Gene: ENSG00000146278.11
Transcript (Including UTRs)
   Position: hg38 chr6:89,080,751-89,085,160 Size: 4,410 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg38 chr6:89,080,895-89,084,196 Size: 3,302 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:89,080,751-89,085,160)mRNA (may differ from genome)Protein (327 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PNRC1_HUMAN
DESCRIPTION: RecName: Full=Proline-rich nuclear receptor coactivator 1; AltName: Full=Proline-rich protein 2; AltName: Full=Protein B4-2;
FUNCTION: Nuclear receptor coactivator. May play a role in signal transduction.
SUBUNIT: Interacts with many nuclear receptors including AR, ESR1, ESRRA, ESRRG, NR3C1/GR, NR5A1, PGR, TR, RAR and RXR. Interacts with GRB2.
INTERACTION: Q9H1D9:POLR3F; NbExp=3; IntAct=EBI-2827376, EBI-710067;
SUBCELLULAR LOCATION: Nucleus (Potential).
TISSUE SPECIFICITY: Expressed in liver, lung, fat and NK/T cells.
DOMAIN: The interaction between PNRC1 and nuclear receptors is dependent on the SH3 binding motif.
SIMILARITY: Belongs to the PNRC family. PNRC1 subfamily.
SEQUENCE CAUTION: Sequence=CAI16244.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PNRC1
Diseases sorted by gene-association score: uremic neuropathy (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 99.50 RPKM in Fallopian Tube
Total median expression: 2047.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.40144-0.183 Picture PostScript Text
3' UTR -215.20964-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026780 - PNRC1/2

ModBase Predicted Comparative 3D Structure on Q12796
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA

Cellular Component:
GO:0000932 P-body
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LF383853 - JP 2014500723-A/191356: Polycomb-Associated Non-Coding RNAs.
MA619430 - JP 2018138019-A/191356: Polycomb-Associated Non-Coding RNAs.
AK312665 - Homo sapiens cDNA, FLJ93057, Homo sapiens proline-rich nuclear receptor coactivator 1 (PNRC1),mRNA.
AK130046 - Homo sapiens cDNA FLJ26536 fis, clone KDN09253, highly similar to Homo sapiens proline rich 2 (PROL2).
U03105 - Human B4-2 protein mRNA, complete cds.
JD115969 - Sequence 96993 from Patent EP1572962.
BC018112 - Homo sapiens proline-rich nuclear receptor coactivator 1, mRNA (cDNA clone MGC:8929 IMAGE:3916954), complete cds.
JD164689 - Sequence 145713 from Patent EP1572962.
AB464669 - Synthetic construct DNA, clone: pF1KB8952, Homo sapiens PNRC1 gene for proline-rich nuclear receptor coactivator 1, without stop codon, in Flexi system.
AY303779 - Homo sapiens proline rich 2 protein (PROL2) mRNA, complete cds; alternatively spliced.
LF354120 - JP 2014500723-A/161623: Polycomb-Associated Non-Coding RNAs.
MA589697 - JP 2018138019-A/161623: Polycomb-Associated Non-Coding RNAs.
BC044919 - Homo sapiens proline-rich nuclear receptor coactivator 1, mRNA (cDNA clone IMAGE:5295281), complete cds.
AK130722 - Homo sapiens cDNA FLJ27212 fis, clone SYN03631, highly similar to Homo sapiens proline rich 2 (PROL2).
JD346632 - Sequence 327656 from Patent EP1572962.
LF354114 - JP 2014500723-A/161617: Polycomb-Associated Non-Coding RNAs.
MA589691 - JP 2018138019-A/161617: Polycomb-Associated Non-Coding RNAs.
LF354113 - JP 2014500723-A/161616: Polycomb-Associated Non-Coding RNAs.
MA589690 - JP 2018138019-A/161616: Polycomb-Associated Non-Coding RNAs.
AF279899 - Homo sapiens PNAS-145 mRNA, complete cds.
JD036922 - Sequence 17946 from Patent EP1572962.
JD393056 - Sequence 374080 from Patent EP1572962.
JD359612 - Sequence 340636 from Patent EP1572962.
JD504176 - Sequence 485200 from Patent EP1572962.
JD154548 - Sequence 135572 from Patent EP1572962.
JD057811 - Sequence 38835 from Patent EP1572962.
JD353376 - Sequence 334400 from Patent EP1572962.
JD444105 - Sequence 425129 from Patent EP1572962.
JD241672 - Sequence 222696 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6Q0, E1P515, ENST00000336032.1, ENST00000336032.2, ENST00000336032.3, NM_006813, PNRC1_HUMAN, PROL2, Q12796, Q5T7J6, uc003pmv.1, uc003pmv.2, uc003pmv.3, uc003pmv.4, uc003pmv.5
UCSC ID: ENST00000336032.4
RefSeq Accession: NM_006813
Protein: Q12796 (aka PNRC1_HUMAN or PNR1_HUMAN)
CCDS: CCDS5018.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.