Human Gene UNC5D (ENST00000404895.7) from GENCODE V44
  Description: Homo sapiens unc-5 netrin receptor D (UNC5D), transcript variant 1, mRNA. (from RefSeq NM_080872)
Gencode Transcript: ENST00000404895.7
Gencode Gene: ENSG00000156687.11
Transcript (Including UTRs)
   Position: hg38 chr8:35,235,475-35,796,540 Size: 561,066 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg38 chr8:35,235,785-35,790,563 Size: 554,779 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:35,235,475-35,796,540)mRNA (may differ from genome)Protein (953 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UNC5D_HUMAN
DESCRIPTION: RecName: Full=Netrin receptor UNC5D; AltName: Full=Protein unc-5 homolog 4; AltName: Full=Protein unc-5 homolog D; Flags: Precursor;
FUNCTION: Receptor for netrin. May be involved in axon guidance by mediating axon repulsion of neuronal growth cones in the developing nervous system upon ligand binding. Axon repulsion in growth cones may be caused by its association with DCC that may trigger signaling for repulsion. It also acts as a dependence receptor required for apoptosis induction when not associated with netrin ligand (By similarity).
SUBUNIT: Interacts with the cytoplasmic part of DCC (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (By similarity).
PTM: Phosphorylated on cytoplasmic tyrosine residues (By similarity).
PTM: Proteolytically cleaved by caspases during apoptosis. The cleavage does not take place when the receptor is associated with netrin ligand. Its cleavage by caspases is required to induce apoptosis (By similarity).
SIMILARITY: Belongs to the unc-5 family.
SIMILARITY: Contains 1 death domain.
SIMILARITY: Contains 1 Ig-like (immunoglobulin-like) domain.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
SIMILARITY: Contains 2 TSP type-1 domains.
SIMILARITY: Contains 1 ZU5 domain.

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.78 RPKM in Pituitary
Total median expression: 4.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -153.20310-0.494 Picture PostScript Text
3' UTR -1499.305977-0.251 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000488 - Death
IPR011029 - DEATH-like
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR013098 - Ig_I-set
IPR003598 - Ig_sub2
IPR000884 - Thrombospondin_1_rpt
IPR000906 - ZU5

Pfam Domains:
PF00531 - Death domain
PF07679 - Immunoglobulin I-set domain
PF00090 - Thrombospondin type 1 domain
PF00791 - ZU5 domain

ModBase Predicted Comparative 3D Structure on Q6UXZ4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005042 netrin receptor activity

Biological Process:
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007275 multicellular organism development
GO:0007411 axon guidance
GO:0021859 pyramidal neuron differentiation
GO:0038007 netrin-activated signaling pathway
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules
GO:2001222 regulation of neuron migration

Cellular Component:
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AY358147 - Homo sapiens clone DNA219246 UNC5D (UNQ6012) mRNA, complete cds.
AB055056 - Homo sapiens mRNA for KIAA1777 protein (Unc5h4), complete cds.
AB527398 - Synthetic construct DNA, clone: pF1KA1777, Homo sapiens UNC5D gene for unc-5 homolog D, without stop codon, in Flexi system.
BC156113 - Synthetic construct Homo sapiens clone IMAGE:100062326, MGC:190462 unc-5 homolog D (C. elegans) (UNC5D) mRNA, encodes complete protein.
BC156908 - Synthetic construct Homo sapiens clone IMAGE:100062722, MGC:190596 unc-5 homolog D (C. elegans) (UNC5D) mRNA, encodes complete protein.
AK122610 - Homo sapiens cDNA FLJ16019 fis, clone BRAMY2001473, highly similar to Netrin receptor UNC5D precursor.
AK122615 - Homo sapiens cDNA FLJ16027 fis, clone FCBBF3012170, moderately similar to Mus musculus rostral cerebellar malformation protein (rcm) mRNA.
JD063915 - Sequence 44939 from Patent EP1572962.
JD206512 - Sequence 187536 from Patent EP1572962.
JD170813 - Sequence 151837 from Patent EP1572962.
JD354749 - Sequence 335773 from Patent EP1572962.
JD492451 - Sequence 473475 from Patent EP1572962.
JD437552 - Sequence 418576 from Patent EP1572962.
JD348417 - Sequence 329441 from Patent EP1572962.
JD292778 - Sequence 273802 from Patent EP1572962.
JD289464 - Sequence 270488 from Patent EP1572962.
JD410424 - Sequence 391448 from Patent EP1572962.
JD503360 - Sequence 484384 from Patent EP1572962.
JD305230 - Sequence 286254 from Patent EP1572962.
JD183733 - Sequence 164757 from Patent EP1572962.
JD546792 - Sequence 527816 from Patent EP1572962.
JD417515 - Sequence 398539 from Patent EP1572962.
JD263401 - Sequence 244425 from Patent EP1572962.
AB073394 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla00613, full insert sequence.
JD046424 - Sequence 27448 from Patent EP1572962.
JD243083 - Sequence 224107 from Patent EP1572962.
JD356175 - Sequence 337199 from Patent EP1572962.
JD083043 - Sequence 64067 from Patent EP1572962.
JD171669 - Sequence 152693 from Patent EP1572962.
JD111977 - Sequence 93001 from Patent EP1572962.
JD523819 - Sequence 504843 from Patent EP1572962.
JD063526 - Sequence 44550 from Patent EP1572962.
JD223683 - Sequence 204707 from Patent EP1572962.
JD299167 - Sequence 280191 from Patent EP1572962.
AF466364 - Homo sapiens hypothetical protein mRNA, complete cds.
JD351325 - Sequence 332349 from Patent EP1572962.
JD050099 - Sequence 31123 from Patent EP1572962.
JD326282 - Sequence 307306 from Patent EP1572962.
JD537438 - Sequence 518462 from Patent EP1572962.
JD194972 - Sequence 175996 from Patent EP1572962.
JD491762 - Sequence 472786 from Patent EP1572962.
JD043602 - Sequence 24626 from Patent EP1572962.
AK092313 - Homo sapiens cDNA FLJ34994 fis, clone OCBBF2011283.
JD534977 - Sequence 516001 from Patent EP1572962.
JD563043 - Sequence 544067 from Patent EP1572962.
JD433601 - Sequence 414625 from Patent EP1572962.
JD294269 - Sequence 275293 from Patent EP1572962.
JD183170 - Sequence 164194 from Patent EP1572962.
JD324079 - Sequence 305103 from Patent EP1572962.
JD414265 - Sequence 395289 from Patent EP1572962.
JD379398 - Sequence 360422 from Patent EP1572962.
JD503191 - Sequence 484215 from Patent EP1572962.
JD303828 - Sequence 284852 from Patent EP1572962.
JD417150 - Sequence 398174 from Patent EP1572962.
JD520553 - Sequence 501577 from Patent EP1572962.
JD368205 - Sequence 349229 from Patent EP1572962.
JD331409 - Sequence 312433 from Patent EP1572962.
JD201991 - Sequence 183015 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04360 - Axon guidance

Reactome (by CSHL, EBI, and GO)

Protein Q6UXZ4 (Reactome details) participates in the following event(s):

R-HSA-373751 UNC-5 binds Netrin-1
R-HSA-373713 DCC heterodimerizes with UNC-5:Netrin-1
R-HSA-418886 Netrin mediated repulsion signals
R-HSA-373752 Netrin-1 signaling
R-HSA-422475 Axon guidance
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000404895.1, ENST00000404895.2, ENST00000404895.3, ENST00000404895.4, ENST00000404895.5, ENST00000404895.6, KIAA1777, NM_080872, Q6UXZ4, Q8WYP7, uc003xjr.1, uc003xjr.2, uc003xjr.3, uc003xjr.4, UNC5D_HUMAN, UNC5H4, UNQ6012/PRO34692
UCSC ID: ENST00000404895.7
RefSeq Accession: NM_080872
Protein: Q6UXZ4 (aka UNC5D_HUMAN or UN5D_HUMAN)
CCDS: CCDS83279.1, CCDS6093.2

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.