Human Gene SMARCA1 (ENST00000371123.5) from GENCODE V44
Description: Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (SMARCA1), transcript variant 8, mRNA. (from RefSeq NM_001378264) RefSeq Summary (NM_001282875): This gene encodes a member of the SWI/SNF family of proteins. The encoded protein is an ATPase which is expressed in diverse tissues and contributes to the chromatin remodeling complex that is involved in transcription. The protein may also play a role in DNA damage, growth inhibition and apoptosis of cancer cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]. Gencode Transcript: ENST00000371123.5 Gencode Gene: ENSG00000102038.16 Transcript (Including UTRs) Position: hg38 chrX:129,446,506-129,523,485 Size: 76,980 Total Exon Count: 24 Strand: - Coding Region Position: hg38 chrX:129,447,162-129,523,370 Size: 76,209 Coding Exon Count: 24
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
US Server
