Human Gene ACY3 (ENST00000255082.8) from GENCODE V44
  Description: Homo sapiens aminoacylase 3 (ACY3), mRNA. (from RefSeq NM_080658)
Gencode Transcript: ENST00000255082.8
Gencode Gene: ENSG00000132744.8
Transcript (Including UTRs)
   Position: hg38 chr11:67,642,555-67,650,730 Size: 8,176 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg38 chr11:67,642,724-67,647,043 Size: 4,320 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:67,642,555-67,650,730)mRNA (may differ from genome)Protein (319 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACY3_HUMAN
DESCRIPTION: RecName: Full=Aspartoacylase-2; EC=3.5.1.-; AltName: Full=Acylase III; AltName: Full=Aminoacylase-3; Short=ACY-3; AltName: Full=Hepatitis C virus core-binding protein 1; Short=HCBP1; Short=HCV core-binding protein 1;
FUNCTION: Plays an important role in deacetylating mercapturic acids in kidney proximal tubules (By similarity).
COFACTOR: Binds 1 zinc ion per subunit (Potential).
SUBUNIT: Homotetramer (By similarity). Interacts with HCV core protein.
SUBCELLULAR LOCATION: Apical cell membrane; Peripheral membrane protein. Cytoplasm. Note=Predominantly localized in the apical membrane of cells in the S1 segment. In the proximal straight tubules (S2 and S3 segments) is expressed diffusely throughout the cytoplasm.
SIMILARITY: Belongs to the AspA/AstE family. Aspartoacylase subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACY3
Diseases sorted by gene-association score: hepatitis c virus (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 22.73 RPKM in Small Intestine - Terminal Ileum
Total median expression: 95.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -87.00242-0.360 Picture PostScript Text
3' UTR -43.20169-0.256 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016708 - Aspartoacylase
IPR007036 - Aste_AspA

Pfam Domains:
PF04952 - Succinylglutamate desuccinylase / Aspartoacylase family

ModBase Predicted Comparative 3D Structure on Q96HD9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function
GO:0004046 aminoacylase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006805 xenobiotic metabolic process
GO:0008150 biological_process
GO:0008152 metabolic process
GO:0016032 viral process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016324 apical plasma membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF211129 - JP 2014500723-A/18632: Polycomb-Associated Non-Coding RNAs.
MA446706 - JP 2018138019-A/18632: Polycomb-Associated Non-Coding RNAs.
LF344201 - JP 2014500723-A/151704: Polycomb-Associated Non-Coding RNAs.
MA579778 - JP 2018138019-A/151704: Polycomb-Associated Non-Coding RNAs.
AY040761 - Homo sapiens aspartoacylase-3 mRNA, complete cds.
AY169233 - Homo sapiens acylase III mRNA, complete cds.
BC008689 - Homo sapiens aspartoacylase (aminocyclase) 3, mRNA (cDNA clone MGC:9740 IMAGE:3853707), complete cds.
JD403088 - Sequence 384112 from Patent EP1572962.
JD521705 - Sequence 502729 from Patent EP1572962.
JD320450 - Sequence 301474 from Patent EP1572962.
JD544833 - Sequence 525857 from Patent EP1572962.
JD239674 - Sequence 220698 from Patent EP1572962.
LF344200 - JP 2014500723-A/151703: Polycomb-Associated Non-Coding RNAs.
MA579777 - JP 2018138019-A/151703: Polycomb-Associated Non-Coding RNAs.
HQ447856 - Synthetic construct Homo sapiens clone IMAGE:100071201; CCSB002837_04 aspartoacylase (aminocyclase) 3 (ACY3) gene, encodes complete protein.
KJ895163 - Synthetic construct Homo sapiens clone ccsbBroadEn_04557 ACY3 gene, encodes complete protein.
CU679045 - Synthetic construct Homo sapiens gateway clone IMAGE:100018894 5' read ACY3 mRNA.
AF359506 - Homo sapiens HCBP1 (HCBP1) mRNA, complete cds.
AY032593 - Homo sapiens hepatitis C virus core-binding protein 1 (HCBP1) mRNA, complete cds.
LF344199 - JP 2014500723-A/151702: Polycomb-Associated Non-Coding RNAs.
MA579776 - JP 2018138019-A/151702: Polycomb-Associated Non-Coding RNAs.
AK308710 - Homo sapiens cDNA, FLJ98751.
JD246275 - Sequence 227299 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00250 - Alanine, aspartate and glutamate metabolism
hsa00340 - Histidine metabolism

Reactome (by CSHL, EBI, and GO)

Protein Q96HD9 (Reactome details) participates in the following event(s):

R-HSA-5433074 ACY:Zn2+ dimers hydrolyse mercapturic acids
R-HSA-5423646 Aflatoxin activation and detoxification
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ACY3_HUMAN, ASPA2, ENST00000255082.1, ENST00000255082.2, ENST00000255082.3, ENST00000255082.4, ENST00000255082.5, ENST00000255082.6, ENST00000255082.7, NM_080658, Q96HD9, uc001omq.1, uc001omq.2, uc001omq.3, uc001omq.4
UCSC ID: ENST00000255082.8
RefSeq Accession: NM_080658
Protein: Q96HD9 (aka ACY3_HUMAN)
CCDS: CCDS8175.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.