Mouse Gene Inhba (ENSMUST00000164993.2) from GENCODE VM33
  Description: Belongs to the TGF-beta family. (from UniProt Q3UY39)
RefSeq Summary (NM_008380): This gene encodes a member of the TGF-beta (transforming growth factor-beta) superfamily of proteins. The encoded preproprotein is proteolytically processed to generate a subunit of the dimeric activin and inhibin protein complexes. These complexes activate and inhibit, respectively, follicle stimulating hormone secretion from the pituitary gland. The encoded protein also plays a role in eye, tooth and testis development. Homozygous knockout mice for this gene lack whiskers and exhibit tooth and palate defects, leading to neonatal lethality. [provided by RefSeq, Aug 2016]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Gencode Transcript: ENSMUST00000164993.2
Gencode Gene: ENSMUSG00000041324.15
Transcript (Including UTRs)
   Position: mm39 chr13:16,189,060-16,201,796 Size: 12,737 Total Exon Count: 3 Strand: +
Coding Region
   Position: mm39 chr13:16,191,881-16,201,714 Size: 9,834 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-15 19:06:27

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:16,189,060-16,201,796)mRNA (may differ from genome)Protein (424 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsMGIPubMed
SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: Q3UY39_MOUSE
DESCRIPTION: SubName: Full=Inhibin beta-A;
SIMILARITY: Belongs to the TGF-beta family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.30172-0.205 Picture PostScript Text
3' UTR -10.8082-0.132 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000491 - Inhibin_betaA
IPR001839 - TGF-b_C
IPR001111 - TGF-b_N
IPR015615 - TGF-beta-rel
IPR017948 - TGFb_CS

Pfam Domains:
PF00019 - Transforming growth factor beta like domain
PF00688 - TGF-beta propeptide

ModBase Predicted Comparative 3D Structure on Q3UY39
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005125 cytokine activity
GO:0005179 hormone activity
GO:0008083 growth factor activity
GO:0017046 peptide hormone binding
GO:0034711 inhibin binding
GO:0042802 identical protein binding
GO:0046982 protein heterodimerization activity
GO:0070699 type II activin receptor binding

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0001541 ovarian follicle development
GO:0001707 mesoderm formation
GO:0001942 hair follicle development
GO:0002244 hematopoietic progenitor cell differentiation
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007050 cell cycle arrest
GO:0008285 negative regulation of cell proliferation
GO:0008584 male gonad development
GO:0010469 regulation of receptor activity
GO:0010628 positive regulation of gene expression
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0021773 striatal medium spiny neuron differentiation
GO:0030308 negative regulation of cell growth
GO:0032270 positive regulation of cellular protein metabolic process
GO:0032924 activin receptor signaling pathway
GO:0035987 endodermal cell differentiation
GO:0042476 odontogenesis
GO:0042493 response to drug
GO:0042541 hemoglobin biosynthetic process
GO:0042701 progesterone secretion
GO:0045648 positive regulation of erythrocyte differentiation
GO:0045786 negative regulation of cell cycle
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046880 regulation of follicle-stimulating hormone secretion
GO:0048333 mesodermal cell differentiation
GO:0051799 negative regulation of hair follicle development
GO:0060021 palate development
GO:0060279 positive regulation of ovulation
GO:0061029 eyelid development in camera-type eye
GO:0071372 cellular response to follicle-stimulating hormone stimulus
GO:0071397 cellular response to cholesterol
GO:0097154 GABAergic neuron differentiation
GO:0097191 extrinsic apoptotic signaling pathway
GO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0043509 activin A complex
GO:0043512 inhibin A complex
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF199398 - JP 2014500723-A/6901: Polycomb-Associated Non-Coding RNAs.
MA434975 - JP 2018138019-A/6901: Polycomb-Associated Non-Coding RNAs.
LF199397 - JP 2014500723-A/6900: Polycomb-Associated Non-Coding RNAs.
MA434974 - JP 2018138019-A/6900: Polycomb-Associated Non-Coding RNAs.
AK134991 - Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430537K11 product:inhibin beta-A, full insert sequence.
LF204995 - JP 2014500723-A/12498: Polycomb-Associated Non-Coding RNAs.
MA440572 - JP 2018138019-A/12498: Polycomb-Associated Non-Coding RNAs.
X69619 - M.musculus mRNA for inhibin beta-A subunit.
BC053527 - Mus musculus inhibin beta-A, mRNA (cDNA clone MGC:58937 IMAGE:6528822), complete cds.
LF235490 - JP 2014500723-A/42993: Polycomb-Associated Non-Coding RNAs.
MA471067 - JP 2018138019-A/42993: Polycomb-Associated Non-Coding RNAs.
LF235491 - JP 2014500723-A/42994: Polycomb-Associated Non-Coding RNAs.
MA471068 - JP 2018138019-A/42994: Polycomb-Associated Non-Coding RNAs.
AK135474 - Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820426N15 product:inhibin beta-A, full insert sequence.
CT010380 - Mus musculus full open reading frame cDNA clone RZPDo836D0753D for gene Inhba, Inhibin beta-A; complete cds, incl. stopcodon.
LF235492 - JP 2014500723-A/42995: Polycomb-Associated Non-Coding RNAs.
MA471069 - JP 2018138019-A/42995: Polycomb-Associated Non-Coding RNAs.
LF235493 - JP 2014500723-A/42996: Polycomb-Associated Non-Coding RNAs.
MA471070 - JP 2018138019-A/42996: Polycomb-Associated Non-Coding RNAs.
LF235494 - JP 2014500723-A/42997: Polycomb-Associated Non-Coding RNAs.
MA471071 - JP 2018138019-A/42997: Polycomb-Associated Non-Coding RNAs.
LF235498 - JP 2014500723-A/43001: Polycomb-Associated Non-Coding RNAs.
MA471075 - JP 2018138019-A/43001: Polycomb-Associated Non-Coding RNAs.
LF235499 - JP 2014500723-A/43002: Polycomb-Associated Non-Coding RNAs.
MA471076 - JP 2018138019-A/43002: Polycomb-Associated Non-Coding RNAs.
LF235500 - JP 2014500723-A/43003: Polycomb-Associated Non-Coding RNAs.
MA471077 - JP 2018138019-A/43003: Polycomb-Associated Non-Coding RNAs.
LF235501 - JP 2014500723-A/43004: Polycomb-Associated Non-Coding RNAs.
MA471078 - JP 2018138019-A/43004: Polycomb-Associated Non-Coding RNAs.
LF235502 - JP 2014500723-A/43005: Polycomb-Associated Non-Coding RNAs.
MA471079 - JP 2018138019-A/43005: Polycomb-Associated Non-Coding RNAs.
LF235503 - JP 2014500723-A/43006: Polycomb-Associated Non-Coding RNAs.
MA471080 - JP 2018138019-A/43006: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENSMUST00000164993.1, mCG_18028, Q3UY39, Q3UY39_MOUSE, uc007pnw.1, uc007pnw.2, uc007pnw.3, X69619
UCSC ID: ENSMUST00000164993.2
RefSeq Accession: NM_008380
Protein: Q3UY39

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.