Gene interactions and pathways from curated databases and text-mining

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TNF — TRAF6

Pathways - manually collected, often from reviews:

  • BioCarta nf-kb signaling pathway: TNF/TNF R/FADD/TRADD/RIP/TRAF6 complex (TNF-TNFRSF1A-FADD-TRADD-RIPK1-TRAF6) → IKK-alpha/MEKK1/NIK complex (CHUK-MAP3K1-MAP4K4) (modification, activates)
  • BioCarta nf-kb signaling pathway: TNF-alpha (TNF) → TNF R/FADD/TRADD/RIP/TRAF6 complex (TNFRSF1A-FADD-TRADD-RIPK1-TRAF6) (modification, collaborate)
  • BioCarta nf-kb signaling pathway: TNF-alpha (TNF) → TNF/TNF R/FADD/TRADD/RIP/TRAF6 complex (TNF-TNFRSF1A-FADD-TRADD-RIPK1-TRAF6) (modification, collaborate)
  • BioCarta nf-kb signaling pathway: TNF R/FADD/TRADD/RIP/TRAF6 complex (TNFRSF1A-FADD-TRADD-RIPK1-TRAF6) → TNF/TNF R/FADD/TRADD/RIP/TRAF6 complex (TNF-TNFRSF1A-FADD-TRADD-RIPK1-TRAF6) (modification, collaborate)
  • WikiPathways Photodynamic therapy-induced NF-kB survival signaling: TNF/TNFRSF1A → TRAF6 (activation)

Text-mined interactions from Literome

Pryhuber et al., Am J Respir Cell Mol Biol 2000 (Pneumonia) : In contrast to the epithelial cells, TRAF1 was not induced by TNF-alpha in U937 cells, a human monocytic cell line, suggesting cell type-specific regulation
Caunt et al., J Biol Chem 2001 : Ras controls tumor necrosis factor receptor associated factor ( TRAF)6 dependent induction of nuclear factor-kappa b. Selective regulation through receptor signaling components
Ichikawa et al., Biochem Biophys Res Commun 2006 : While TNF-alpha exerts various biological effects including cell death, the role of TRAF6 in the TNF-alpha signaling remains to be unclear
Shembade et al., EMBO J 2009 : RNF11 negatively regulated RIP1 and TRAF6 ubiquitination upon stimulation with TNF and LPS, respectively
Avila et al., Innate Immun 2012 : Our results indicate that Lyn plays a positive role in TLR4 induced production of TNF-a in MCs controlling the activity of the TRAF-6/TAK-1 protein complex
Min et al., J Immunol 1997 : These data suggest that TNF activates parallel TRAF-NF-kappa B and TRAF-RAC/CDC42-JNK-c-Jun/ATF2 pathways to initiate E-selectin transcription