Schema for SGD Other - Other Features from Saccharomyces Genome Database
  Database: sacCer3    Primary Table: sgdOther    Row Count: 2,476   Data last updated: 2011-08-29
Format description: Features other than coding genes from yeast genome database
fieldexampleSQL type info description
bin 585smallint(6) range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 1int(11) range Start (zero based)
chromEnd 801int(11) range End (non-inclusive)
name TEL01Lvarchar(255) values Feature name
score 0int(11) range Always 0
strand -char(1) values Strand: +, - or .
type Telomeric region on the lef...varchar(255) values Feature type

Connected Tables and Joining Fields
        sacCer3.sgdOtherDescription.name (via sgdOther.name)

Sample Rows
 
binchromchromStartchromEndnamescorestrandtype
585chrI1801TEL01L0-Telomeric region on the left arm of Chromosome I  composed of an X element core sequence, X element combinatorial repeats, and a ...
585chrI162TEL01L-TR0-Terminal stretch of telomeric repeats on the left arm of Chromosome I
585chrI63336TEL01L-XR0-Telomeric X element combinatorial Repeat region on the left arm of Chromosome I  contains repeats of the D, C, B and A types, as ...
585chrI337801TEL01L-XC0-Telomeric X element Core sequence on the left arm of Chromosome I  contains an ARS consensus sequence, an Abf1p binding site con ...
585chrI532544TEL01L-XC_binding_site0-SGD, binding_site
585chrI6501791ARS1020.ARSI-1, Autonomously Replicating Sequence
585chrI753763TEL01L-XC_nucleotide_match0-SGD, nucleotide_match
585chrI79978547ARS1030.ARSI-8, Autonomously Replicating Sequence
585chrI2223022552YALWdelta10+Ty1 LTR
585chrI2400027968FLO90-landmark, region

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

SGD Other (sgdOther) Track Description
 

Description

This track shows a variety of features in the Saccharomyces cerevisiae genome, including tRNAs, transposons, centromeres, and open reading frames (ORFs) classified as dubious.

Click on an item in this track to display details about it.

The data were downloaded from the Saccharomyces Genome Database (SGD): saccharomyces_cerevisiae.gff (accessed 29 Aug. 2011).

Credits

Thanks to the SGD for providing the data used in this annotation.