Kim RNA Brkpts Track Settings
 
Kim 2020 RNA-seq: Nanopore and MGISeq Breakpoints   (All Expression and Regulation tracks)

Display mode:       Reset to defaults

Type of graph:
Track height: pixels (range: 11 to 48)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 127)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
Graph configuration help
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 MGI Ld2Bd 3'  MGISEQ Leader-to-body 3' Breakpoints   Schema 
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 MGI NC-Brkpt 3'  Kim et al. MGISEQ Noncanonical 3' Breakpoints   Schema 
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 MGI NC-Brkpt 5'  Kim et al. MGISEQ Noncanonical 5' Breakpoints   Schema 
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 Nanop Ld2Bd 3'  Nanopore Leader-to-body 3' Breakpoints   Schema 
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 Nanop NC-Brkpt 3'  Nanopore Noncanonical 3' Breakpoints   Schema 
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 Nanop NC-Brkpt 5'  Nanopore Noncanonical 5' Breakpoints   Schema 
    

Description

This track shows the locations of RNA transcript breakpoints as determined by Nanopore and DNA Nanoball MGISEQ sequencing by Kim et al, Cell 2020.

Display Conventions and Configuration

The height of the bars show the frequency of the transcript breakpoints. This track contains six subtracks, each of which can be hidden and modified in height and min/max settings for the bars by clicking its "Configure" link above. You can also configure all tracks together with the controls at the top of the track configuration page.

Credits

Thanks to Hyeshik Chang for preparing and sharing custom tracks.

References

The architecture of SARS-CoV-2 transcriptome. Cell 2020. pre-proof