JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

TFBS Summaries Track Settings

Overlap summary of Ensembl ChIPSeq binding peaks across available datasets

Display mode: Reset to defaults

Type of graph:
Track height:	pixels (range: 16 to 64)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 0 to 1)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
Negate values:
Draw y indicator lines:	at y = 0.0: at y =

Graph configuration help

All subtracks:

List subtracks: only selected/visible all ()
	hide Configure	AP2ALPHA	Overlap summary of AP2ALPHA ChipSeq binding peaks across available datasets	Data format
	hide Configure	AP2GAMMA	Overlap summary of AP2GAMMA ChipSeq binding peaks across available datasets	Data format
	hide Configure	ATF3	Overlap summary of ATF3 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BAF155	Overlap summary of BAF155 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BAF170	Overlap summary of BAF170 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BATF	Overlap summary of BATF ChipSeq binding peaks across available datasets	Data format
	hide Configure	BCL11A	Overlap summary of BCL11A ChipSeq binding peaks across available datasets	Data format
	hide Configure	BCL3	Overlap summary of BCL3 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BCLAF1	Overlap summary of BCLAF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BDP1	Overlap summary of BDP1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BRF1	Overlap summary of BRF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BRF2	Overlap summary of BRF2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	BRG1	Overlap summary of BRG1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	CFOS	Overlap summary of CFOS ChipSeq binding peaks across available datasets	Data format
	hide Configure	CJUN	Overlap summary of CJUN ChipSeq binding peaks across available datasets	Data format
	hide Configure	CMYC	Overlap summary of CMYC ChipSeq binding peaks across available datasets	Data format
	hide Configure	CTCF	Overlap summary of CTCF ChipSeq binding peaks across available datasets	Data format
	hide Configure	CTCFL	Overlap summary of CTCFL ChipSeq binding peaks across available datasets	Data format
	hide Configure	E2F1	Overlap summary of E2F1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	E2F4	Overlap summary of E2F4 ChipSeq binding peaks across available datasets	Data format
	hide Configure	E2F6	Overlap summary of E2F6 ChipSeq binding peaks across available datasets	Data format
	hide Configure	EBF	Overlap summary of EBF ChipSeq binding peaks across available datasets	Data format
	hide Configure	EBF1	Overlap summary of EBF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	EGR1	Overlap summary of EGR1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ELF1	Overlap summary of ELF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ETS1	Overlap summary of ETS1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	FOSL1	Overlap summary of FOSL1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	GABP	Overlap summary of GABP ChipSeq binding peaks across available datasets	Data format
	hide Configure	GATA1	Overlap summary of GATA1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	GATA2	Overlap summary of GATA2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	GTF2B	Overlap summary of GTF2B ChipSeq binding peaks across available datasets	Data format
	hide Configure	HDAC2	Overlap summary of HDAC2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	HDAC8	Overlap summary of HDAC8 ChipSeq binding peaks across available datasets	Data format
	hide Configure	HEY1	Overlap summary of HEY1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	INI1	Overlap summary of INI1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	IRF4	Overlap summary of IRF4 ChipSeq binding peaks across available datasets	Data format
	hide Configure	JUNB	Overlap summary of JUNB ChipSeq binding peaks across available datasets	Data format
	hide Configure	JUND	Overlap summary of JUND ChipSeq binding peaks across available datasets	Data format
	hide Configure	MAX	Overlap summary of MAX ChipSeq binding peaks across available datasets	Data format
	hide Configure	MEF2A	Overlap summary of MEF2A ChipSeq binding peaks across available datasets	Data format
	hide Configure	MEF2C	Overlap summary of MEF2C ChipSeq binding peaks across available datasets	Data format
	hide Configure	NANOG	Overlap summary of NANOG ChipSeq binding peaks across available datasets	Data format
	hide Configure	NELFE	Overlap summary of NELFE ChipSeq binding peaks across available datasets	Data format
	hide Configure	NFE2	Overlap summary of NFE2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	NFKB	Overlap summary of NFKB ChipSeq binding peaks across available datasets	Data format
	hide Configure	NR4A1	Overlap summary of NR4A1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	NRF1	Overlap summary of NRF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	NRSF	Overlap summary of NRSF ChipSeq binding peaks across available datasets	Data format
	hide Configure	P300	Overlap summary of P300 ChipSeq binding peaks across available datasets	Data format
	hide Configure	PAX5	Overlap summary of PAX5 ChipSeq binding peaks across available datasets	Data format
	hide Configure	PBX3	Overlap summary of PBX3 ChipSeq binding peaks across available datasets	Data format
	hide Configure	POLII	Overlap summary of POLII ChipSeq binding peaks across available datasets	Data format
	hide Configure	POLIII	Overlap summary of POLIII ChipSeq binding peaks across available datasets	Data format
	hide Configure	POU2F2	Overlap summary of POU2F2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	POU5F1	Overlap summary of POU5F1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	PU1	Overlap summary of PU1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	RAD21	Overlap summary of RAD21 ChipSeq binding peaks across available datasets	Data format
	hide Configure	RPC155	Overlap summary of RPC155 ChipSeq binding peaks across available datasets	Data format
	hide Configure	RXRA	Overlap summary of RXRA ChipSeq binding peaks across available datasets	Data format
	hide Configure	SETDB1	Overlap summary of SETDB1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SIN3AK20	Overlap summary of SIN3AK20 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SIRT6	Overlap summary of SIRT6 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SIX5	Overlap summary of SIX5 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SP1	Overlap summary of SP1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SP2	Overlap summary of SP2 ChipSeq binding peaks across available datasets	Data format
	hide Configure	SRF	Overlap summary of SRF ChipSeq binding peaks across available datasets	Data format
	hide Configure	TAF1	Overlap summary of TAF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	TAF7	Overlap summary of TAF7 ChipSeq binding peaks across available datasets	Data format
	hide Configure	TCF12	Overlap summary of TCF12 ChipSeq binding peaks across available datasets	Data format
	hide Configure	TFIIIC110	Overlap summary of TFIIIC110 ChipSeq binding peaks across available datasets	Data format
	hide Configure	THAP1	Overlap summary of THAP1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	TR4	Overlap summary of TR4 ChipSeq binding peaks across available datasets	Data format
	hide Configure	USF1	Overlap summary of USF1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	XRCC4	Overlap summary of XRCC4 ChipSeq binding peaks across available datasets	Data format
	hide Configure	YY1	Overlap summary of YY1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZBTB33	Overlap summary of ZBTB33 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZBTB7A	Overlap summary of ZBTB7A ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZEB1	Overlap summary of ZEB1 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZNF263	Overlap summary of ZNF263 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZNF274	Overlap summary of ZNF274 ChipSeq binding peaks across available datasets	Data format
	hide Configure	ZZZ3	Overlap summary of ZZZ3 ChipSeq binding peaks across available datasets	Data format

Assembly: Human Dec. 2013 (GRCh38/hg38)

Overlap summary of transcription factor ChIP-seq binding peaks across available data sets

Description

These tracks display, for each transcription factor, the probability of observing binding, based on the available ChIP-seq data sets.

Display Conventions and Configuration

The signal tracks are displaying the proportion (between 0 and 1) of data sets reporting a peak at each location.

Transcription factor tracks are coloured in gold, with the exception of CTCF, which is coloured in blue due to its known functions as an insulator and chromatin architecture regulator and its inclusion in the genome segmentation.

Methods

Publicly available human transcription factor ChIP-seq data sets were obtained, including from the ENCODE and Roadmap Epigenomics Projects. All data was remapped and peak called using the Ensembl Epigenomic Alignment and Peak Calling Pipeline.

For every transcription factor, the probability of having binding at any position, based on the available data sets was calculated as

number of overlapping peaks / number of data sets

References

Zerbino DR, Johnson N, Wilder SP, Juettemann T, et al. Ensembl Regulation Resources. (in preparation).

Flicek P, et al. Ensembl 2014. Nucleic Acids Research 2014 Jan;42(Database issue):D749-55.

ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 2012 Sep 6;489(7414):57-74.

Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, et al. The NIH Roadmap Epigenomics Mapping Consortium. Nature Biotechnology 2010 Oct;28(10):1045-8.

Contact

Ensembl Helpdesk