Multiz Alignments of 30 mammals (27 primates)
 

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Alignment block 1 of 323 in window, 57795963 - 57796001, 39 bps 
B D                     Human  g------gt-attcttcacttcccccactcccgctctcctgcccca
B D                     Chimp  g------gt-attcttcacttccgccactcccgctctcctgcccca
B D                    Bonobo  g------gt-attcttcacttccgccactcccgctctcctgcccca
B D                   Gorilla  g------gt-attcttcacttcccccactcccgctctcctgcccca
B D                 Orangutan  g------gt-attcttcacttcccccactcccgtt--------cca
B D                    Rhesus  g------gt-attcttcacttcccccactcccactgccccgcccca
B D       Crab-eating macaque  g------gt-attcttcacttcccccactcccactgccccgcccca
           Pig-tailed macaque  g------gt-attcttcacttcccccactcccactgccccgcccca
               Sooty mangabey  g------gt-attcttcacttcccccactcccactgccccgcccca
                       Baboon  g------gt-attcttcacttcccccactcccactgccccgcccca
B D              Green monkey  g------gt-attcttcacttcccccactcccactgcgccgcccca
                        Drill  g------gt-attcttcacttcccccactcccactgccccgcccca
B D          Proboscis monkey  g------gt-attcttcacttcccccactcccactgccccacccca
              Angolan colobus  g------gt-attcttcacttcccccactcccactgccccacccca
B D  Golden snub-nosed monkey  g------gt-attcttcacttcccccactcccactgccccacccca
      Black snub-nosed monkey  g------gt-attcttcacttcccccactcccactgccccacccca
B D                  Marmoset  g------gt-attcttcacttatcccactctcacc----accccca
B D           Squirrel monkey  g------gt-gttcttcacttaccccactctcacc-cctcccccca
          White-faced sapajou  g------at-attcttcacttaccccactctcacc-gcccccccca
            Ma's night monkey  g------gt-attcttcacttaccccactctcacc----tccccca
B D                   Tarsier  g------atcactctccagttcccccacccccgcc-tctccccata
B D                  Bushbaby  g------gg-actctgtactaccttcaccc----tatcctcatcca
B D                       Dog  g------at-attcattatttctcctacccataccctctcctccca
B D                 Armadillo  ataagctgc-atcgttcctatccttcaccccca-------------
             Sclater's lemur  ==============================================
           Coquerel's sifaka  ==============================================
                 Mouse lemur  ==============================================
                 Black lemur  ==============================================
B D                    Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Mouse  ==============================================

Inserts between block 1 and 2 in window
B D                      Dog 2bp

Alignment block 2 of 323 in window, 57796002 - 57796004, 3 bps 
B D                     Human  tac
B D                     Chimp  tac
B D                    Bonobo  tac
B D                   Gorilla  tac
B D                 Orangutan  tac
B D                    Rhesus  tgc
B D       Crab-eating macaque  tgc
           Pig-tailed macaque  tgc
               Sooty mangabey  tgc
                       Baboon  tgc
B D              Green monkey  tgc
                        Drill  tgc
B D          Proboscis monkey  tgc
              Angolan colobus  tgc
B D  Golden snub-nosed monkey  tgc
      Black snub-nosed monkey  tgc
B D                  Marmoset  tac
B D           Squirrel monkey  tat
          White-faced sapajou  tat
            Ma's night monkey  tat
B D                   Tarsier  cgc
B D                  Bushbaby  t--
B D                     Mouse  tgc
B D                       Dog  t--
B D                 Armadillo  cac
             Sclater's lemur  ===
           Coquerel's sifaka  ===
                 Mouse lemur  ===
                 Black lemur  ===
B D                    Gibbon  NNN

Inserts between block 2 and 3 in window
B D                      Dog 1bp

Alignment block 3 of 323 in window, 57796005 - 57796019, 15 bps 
B D                     Human  cccttttcctctttc
B D                     Chimp  cccttttcctctttc
B D                    Bonobo  cccttttcctctttc
B D                   Gorilla  cccttttcctctttc
B D                 Orangutan  cccttttcctcttta
B D                    Rhesus  cccttttcctcttta
B D       Crab-eating macaque  cccttttcctcttta
           Pig-tailed macaque  cccttttcctcttta
               Sooty mangabey  cccttttcctcttta
                       Baboon  cccttttcctcttta
B D              Green monkey  cccttttcctcttta
                        Drill  cccttttcctcttta
B D          Proboscis monkey  cccttttcctcttta
              Angolan colobus  cccttttcctcttta
B D  Golden snub-nosed monkey  cccttttcctcttta
      Black snub-nosed monkey  cccttttcctcttta
B D                  Marmoset  ctcttttcctcttta
B D           Squirrel monkey  cccttttcctcttta
          White-faced sapajou  cccttttcctcttcc
            Ma's night monkey  cccttttcctcttta
B D                   Tarsier  ctttcttcctcttta
            Coquerel's sifaka  cccttttcctcttta
B D                  Bushbaby  cccttttcctgttta
B D                     Mouse  tcctctccctcctcc
B D                       Dog  cctttttcttcttt-
B D                 Armadillo  -cacctttttcttta
             Sclater's lemur  ===============
                 Mouse lemur  ===============
                 Black lemur  ===============
B D                    Gibbon  NNNNNNNNNNNNNNN

Inserts between block 3 and 4 in window
B D                  Tarsier 1bp
B D                 Bushbaby 1bp

Alignment block 4 of 323 in window, 57796020 - 57796020, 1 bps 
B D                     Human  -t
B D                     Chimp  -t
B D                    Bonobo  -t
B D                   Gorilla  -t
B D                 Orangutan  -t
B D                    Gibbon  -t
B D                    Rhesus  -t
B D       Crab-eating macaque  -t
           Pig-tailed macaque  -t
               Sooty mangabey  -t
                       Baboon  -t
B D              Green monkey  -t
                        Drill  -t
B D          Proboscis monkey  -t
              Angolan colobus  -t
B D  Golden snub-nosed monkey  -t
      Black snub-nosed monkey  -t
B D                  Marmoset  -t
B D           Squirrel monkey  -t
          White-faced sapajou  -t
            Ma's night monkey  -t
B D                     Mouse  -t
B D                 Armadillo  a-
             Sclater's lemur  ==
           Coquerel's sifaka  --
                 Mouse lemur  ==
                 Black lemur  ==
B D                   Tarsier  ==
B D                  Bushbaby  ==
B D                       Dog  --

Inserts between block 4 and 5 in window
         White-faced sapajou 1bp
B D                    Mouse 3bp

Alignment block 5 of 323 in window, 57796021 - 57796155, 135 bps 
B D                     Human  acaaaaactgaaaatgg-----------------------------------------------------
B D                     Chimp  acaaaaactgaaaatgg-----------------------------------------------------
B D                    Bonobo  acaaaaactgaaaatgg-----------------------------------------------------
B D                   Gorilla  acaaaaactgaaaatgg-----------------------------------------------------
B D                 Orangutan  acaaaaactgaaaatgg-----------------------------------------------------
B D                    Gibbon  acaaaaactg-aaatgg-----------------------------------------------------
B D                    Rhesus  acaaaaactgaaaatga-----------------------------------------------------
B D       Crab-eating macaque  acaaaaactgaaaatga-----------------------------------------------------
           Pig-tailed macaque  acagaaactgaaaatga-----------------------------------------------------
               Sooty mangabey  acaaaaactgaaaatga-----------------------------------------------------
                       Baboon  acaaaaactgaaaatga-----------------------------------------------------
B D              Green monkey  acaaaaactgaaaatga-----------------------------------------------------
                        Drill  acaaaaactgaaaatga-----------------------------------------------------
B D          Proboscis monkey  acaaaaactgaaaatga-----------------------------------------------------
              Angolan colobus  acaaaaactgaaaatga-----------------------------------------------------
B D  Golden snub-nosed monkey  acaaaaactgaaaatga-----------------------------------------------------
      Black snub-nosed monkey  acaaaaactgaaaatga-----------------------------------------------------
B D                  Marmoset  ataaaaactgaaaatgg-----------------------------------------------------
B D           Squirrel monkey  ataaaagccgaaaatgg-----------------------------------------------------
          White-faced sapajou  aaaaaaactgaaaatgg-----------------------------------------------------
            Ma's night monkey  ataaaaactgaaaatgg-----------------------------------------------------
B D                   Tarsier  gcagaaactgaaaatgg-----------------------------------------------------
            Coquerel's sifaka  acaaaatctgaaaatgat----------------------------------------------------
                  Black lemur  acaaaatctgaaaatgg-----------------------------------------------------
              Sclater's lemur  acaaaatctgaaaatgg-----------------------------------------------------
B D                  Bushbaby  agaaaatctgaaac--------------------------------------------------------
B D                     Mouse  acacaggccgaggctgg-----------------------------------------------------
B D                       Dog  ----aaactgcaaacgg-----------------------------------------------------
B D                 Armadillo  acaaaacccaaaaatcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncca
                 Mouse lemur  ======================================================================

                        Human  -------tatctcttcatcttactgc--atatc--cta--tgtaaatgcaaagggactgtcttccaaact
                        Chimp  -------tatctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                       Bonobo  -------tatctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                      Gorilla  -------tatctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                    Orangutan  -------tatctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                       Gibbon  -------tatctcttcatcttactgt--atatc--ctg--tgtaaatgcaaagggactgttttccaaact
                       Rhesus  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
          Crab-eating macaque  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
           Pig-tailed macaque  -------tgtctcttcatcttactgc--atagc--ctg--tgtaaatgcaaaaggactgtcttccaaact
               Sooty mangabey  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                       Baboon  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                 Green monkey  -------tgtcttttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
                        Drill  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
             Proboscis monkey  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
              Angolan colobus  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
     Golden snub-nosed monkey  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccaaact
      Black snub-nosed monkey  -------tgtctcttcatcttactgc--atatc--ctg--tgtaaatgcaaagggaccgtcttccaaact
                     Marmoset  -------tgtctctccatcttactac--atatc--ctg--tgtaaatgcaaagggactgtcttccgaaca
              Squirrel monkey  -------tgtctctccatcttaccgc--atatc--ctg--tgtaaatgcaaagggactgtcttccgaact
          White-faced sapajou  -------tgtctctccatcttactgc--atatc--ctg--tgtaaatgcaaagggactgtcttccgaact
            Ma's night monkey  -------tgtctctccatcttactgc--atatc--ctg--tataaatgcaaagggactgtcttctgaact
                      Tarsier  -------tgtctctccgtctccctgc--acatc--cag--cgtaaatggagagggactgtcttccaaact
            Coquerel's sifaka  -------tatctctccatctgattgc--atatc--cag--tgtaaatggagagggatt-tcttcc-aact
                  Black lemur  -------tatctctccatcttattgc--atatc--cag--cgtaaatggagagggatt-tcttcc-aact
              Sclater's lemur  -------tatctctccatcttattgc--atatc--cag--cgtaaatggagagggatt-tcttcc-aact
                     Bushbaby  -------tgtctctccatattactgc--------------------------------------------
                        Mouse  -------tgtcttcccatcacggtgcagataga--ctgactgcacggacagaaaggtcaccatccaca--
                          Dog  -------tatctctccatcttacagc--gtatccacag--tgtaaatgcaga-gcaccgtctcccagact
                    Armadillo  aaaatcatatctctccatct-acagc--acttccacag--tgtgaaagcggagggactgtctcccaaacc
                  Mouse lemur  ======================================================================

                        Human  gggcctcttctgtgcatattttggtaccatcacagacatcacaatttgttggtgtg-ttgg--t
                        Chimp  gggcctcttctgtgcatattttggtaccatcacagacatcacaatttgttggtgtg-ttgg--t
                       Bonobo  gggcctcttctgtgcatattttggtaccatcacagacatcacaatttgttggtgtg-ttgg--t
                      Gorilla  gggcctcttctgtgcatattttggtaccatcacagacatcacaatttgttggtgtg-ttgg--t
                    Orangutan  gggcctcttctgtgcatattttggtaccatcacagacatcacagtttgttagtgtg-ttgg--t
                       Gibbon  gggcctcttctgtgcatattttggtaccatcacagacatcacaatttgttggtgtg-ttgg--t
                       Rhesus  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
          Crab-eating macaque  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
           Pig-tailed macaque  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
               Sooty mangabey  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtatttgg--t
                       Baboon  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtatttgg---
                 Green monkey  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
                        Drill  gggcctcttctgttcttattttggtaccatcacagacatcacaatttgttggtgtatttgg--t
             Proboscis monkey  gggcctcttctgttcttgttttggtaccatcacagacatcacaatatgttggtgtgtttgg--t
              Angolan colobus  gggcctcttctgttcttattttggtaccatcacagacatcacaaattgttggtgtgtttgg--t
     Golden snub-nosed monkey  gggcctcttctgttcttgttttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
      Black snub-nosed monkey  gggcctcttctgttcttgttttggtaccatcacagacatcacaatttgttggtgtgtttgg--t
                     Marmoset  gggcctcttctgtgcatattttggtacaatcacaaacaacataatttgttggtgtg-ttgg--t
              Squirrel monkey  gggcctcttctgtgcatattttggtacaatcacaaacatcataatttgttggtgtg-ttgg--t
          White-faced sapajou  gggcctcttctgtgcatattttgttacaatcacaaacatcataatttgttggtgtg-ttag--t
            Ma's night monkey  gggcctcttctgtgcatattttggtacaatcacaaacatcataatttgttggtgtg-ttgg--t
                      Tarsier  tggccacttctgtgcatattttgataaca-aacattcatcat--tctggtggtatg--tga--g
            Coquerel's sifaka  tggcctcttctgtgcatattctgctaccaccacaggcatcatattctggtggtgtg-tttgt--
                  Black lemur  tggtctcttctgtgcatattctggtatcaccacacacatcatattctggtggtgtg-ttcg---
              Sclater's lemur  tggtctcttctgtgcatattctggtatcaccacacacatcatattctggtggtgtg-ttcg---
                     Bushbaby  ---------------------------caccacaggcatcatagtctggt-gtatg-ttgg-t-
                        Mouse  -------------gctcacgtgggtgccgccatagtcacctcaatccagtggtgtt-gt-----
                          Dog  cagccacctctatgcatattttggtactatgacatgcgtcatattctggaagtgtg-tta----
                    Armadillo  tg---tcctctgtgcatgttttggtattgccataagtgtcatattctggtggtgtg-ttgg--t
                  Mouse lemur  ================================================================

Alignment block 6 of 323 in window, 57796156 - 57796644, 489 bps 
B D                     Human  tttttg-tttttgc-t----ttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                     Chimp  tttttg-tttttgc-ttttcttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                    Bonobo  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                   Gorilla  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                 Orangutan  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                    Gibbon  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgattcttaaacgagctgcatgggt
B D                    Rhesus  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D       Crab-eating macaque  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
           Pig-tailed macaque  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
               Sooty mangabey  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
                       Baboon  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D              Green monkey  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
                        Drill  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D          Proboscis monkey  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
              Angolan colobus  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D  Golden snub-nosed monkey  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
      Black snub-nosed monkey  tttttg-tttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D                  Marmoset  tttttgttttttgcttttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D           Squirrel monkey  tttttgttttttgc-tttttttaataggaaaactgggagaaaacatgactcttaaacgagctgcgtgggt
          White-faced sapajou  tttttgttttttgcctttttttaataggaagactgggagaaaacatgactcttaaacgagctgcgtgggt
            Ma's night monkey  tttttgttttttgctttcttttaataggaaaactgggagaaaacatgactcttaaacgagctgcgtgggt
B D                   Tarsier  tttttg-tttttgc-ttttttt-gtagggaaactgggagaaaacatgacccttaaacgcgctgcatgggt
                  Mouse lemur  tttttg-tttttgc-tttttt--atagggaaactgggagaaaacctgactcttaaacgagctgcatgggt
            Coquerel's sifaka  -ttttg-tttttgc-tttttt--atagggaaactgggagaaaacctgattcttaaacgagctgcatgggt
                  Black lemur  tttttg-tttttgc-tttttt--atagggaaactgggagaaaacatgactcttaaacgagctgcatgggt
              Sclater's lemur  tttttg-tttttgc-tttttt--atagggaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D                  Bushbaby  --tttg-tttttgc-tttttt--ataggaaaactgggagaaaacatgactcttagacgagctgcatgggt
B D                     Mouse  ttcttg-tttatgc-tctttt--gtaggtaaactgggagagaacatgattcttaagcgagctgcctgggt
B D                       Dog  --cttg-tttttgc-tttttt--atagggaaactgggagaaaacatgactcttaaacgagctgcatgggt
B D                 Armadillo  ttattt-atttatt-tatttttaatagggaaactgggagaaaacatgactcttaaacgagctgcatgggt

                        Human  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaag
                        Chimp  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaag
                       Bonobo  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaag
                      Gorilla  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaag
                    Orangutan  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                       Gibbon  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                       Rhesus  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
          Crab-eating macaque  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
           Pig-tailed macaque  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
               Sooty mangabey  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                       Baboon  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                 Green monkey  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                        Drill  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
             Proboscis monkey  gaaggtgccgtctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
              Angolan colobus  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
     Golden snub-nosed monkey  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
      Black snub-nosed monkey  gaaggtgccatctgggttctacgttggctcttatgtccacggagcaatgcagagtccctcacttcacaac
                     Marmoset  gaaggtgccatctgggttctacgttggctcttatgtccacggagtaatgcagagtccctcccttcacaac
              Squirrel monkey  gaaggtgccatctgggttctacgttggctcttatgtccacggagtaatgcagagtccctcccttcacaac
          White-faced sapajou  gaaggtgccatctgggttctacgttggctcttatgtccacggagtaatgcagagtccctcccttcacaac
            Ma's night monkey  gaaggtgccatctgggttctacgttggctcttatgtccacggagtaatgcagagtccctcccttcacaac
                      Tarsier  gaaggtgccatctgggttctacgttggctcttacgtccatggcatcatgcacagtccctccctgcacaac
                  Mouse lemur  gaaggtgccatctgggttctacgttggctcttatgtccatggaggaatgcatactccctcccttcacaac
            Coquerel's sifaka  gaaggtgccatctgggttctacattggctcttatgtccatggaggaatgcacagtccctcccttcacaac
                  Black lemur  gaaggtgccatctgggttctacgttggctcttatgtccatggcgcaatgcacagtccctcccttcacaac
              Sclater's lemur  gaaggtgccatctgggttctacgttggctcttatgtccatggcgcaatgcacagtccctcccttcacaac
                     Bushbaby  gaaggtgccatctggattctacgttggctcttatgtccacggaacaatgcacagtccctcccttcacaac
                        Mouse  gaaggtgccctctgggttctatgtcggctcttatgtgcacggagtgacgcagagcccctccctccagaac
                          Dog  gaaggtgccagctgggttctatgttggctcctatgtccatggagcaatgcacagctcctccctccacaac
                    Armadillo  gaaggtaccatctgggttctacgttggctcttatgtccatggagcaacacacagtcccttgctccacaac

                        Human  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagacg
                        Chimp  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagatg
                       Bonobo  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagatg
                      Gorilla  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagacg
                    Orangutan  ctggcgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagacg
                       Gibbon  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagacg
                       Rhesus  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
          Crab-eating macaque  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
           Pig-tailed macaque  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
               Sooty mangabey  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaacctagaagaca
                       Baboon  ctgatgctgggaaagtatggggccctggtcatctgtgagacgtctgaacag-aaacaaaccttgaagaca
                 Green monkey  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
                        Drill  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
             Proboscis monkey  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
              Angolan colobus  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
     Golden snub-nosed monkey  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
      Black snub-nosed monkey  ctggtgctggggaagtatggggccctggtcatctgtgagacgtctgaacagaaaacaaaccttgaagaca
                     Marmoset  ctggtgctggggaagtatggggccctggtcatctgcgagacatctgaacagaatgcaaaccttgaagaca
              Squirrel monkey  ctgttgctggggaagtatggggccctggtcatctgcgagacgtctgagcagaacgcaaaccttgaagaac
          White-faced sapajou  gtggtgctggggaagtatggggccctggtcatctgcgagacatctgaacagaacgcaaaccttgaagacc
            Ma's night monkey  ctggtgctggggaagtatggggccctggtcatctgcgagacgtctgaacagagcacaaaccttgaagacc
                      Tarsier  ctggtgctggggaagtatggggccctggtcatctgtgagacattcgagcagaaagccaacctggaggacc
                  Mouse lemur  ctggtgctgggcaagtatggggccctggttgtctgtgagacgtctgagcagaaagcaaaccttgaagacc
            Coquerel's sifaka  ctggtgctgggcaagtatggggccctggttgtctgtgagacgtctgagcagaaagcaaaccttgaagacc
                  Black lemur  ctggtgctgggcaagtatggggccctggttgtctgtgagacgtctgagcagaaagcaaaccttgaagacc
              Sclater's lemur  ctggtgctgggcaagtatggggccctggttgtctgtgagacgtctgagcagaaagcaaaccttgaagacc
                     Bushbaby  ctggtgctgggcaagtacgcagccctggttgtctgtgagacgactgagcagaaagcaaaacttgaagact
                        Mouse  ctggtgctggggaagtacggggccctggtcatctgtgagactcccgagcagatcgcaaacctggaggagg
                          Dog  ctggagctcgggaagtatggggccctggtggtctgcgagacatctgagcgcaaagcaagcctggaagacc
                    Armadillo  ctggtgctgggcaagtatggggcagtggtcgtctgcgagacatctgagcagaaagcaaacctggaagacc

                        Human  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggacgatgagcc
                        Chimp  ttggccgccgccttgggcagcatgtggtgggcatggcccccctcactgttggctccctggacgatgagcc
                       Bonobo  ttggccgccgccttgggcagcatgtggtgggcatggcccccctcactgttggctccctggacgatgagcc
                      Gorilla  ttggccgccgccttgggcagcatgtggt-ggcatggcccccctctctgttggctccctggacgatgagcc
                    Orangutan  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
                       Gibbon  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggacgatgagcc
                       Rhesus  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
          Crab-eating macaque  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
           Pig-tailed macaque  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
               Sooty mangabey  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
                       Baboon  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
                 Green monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
                        Drill  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
             Proboscis monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
              Angolan colobus  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
     Golden snub-nosed monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
      Black snub-nosed monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccccctctctgttggctccctggatgatgagcc
                     Marmoset  ttggccgccgccttgggcagcatgtggtgggcatggcccctctctctgttggctccctggatgatgagcc
              Squirrel monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccctctttctgttggctccctggatgatgagcc
          White-faced sapajou  ttggccgccgcctcgggcagcatgtggtgggcatggcgcctctctctgttggctccctggatgatgagcc
            Ma's night monkey  ttggccgccgccttgggcagcatgtggtgggcatggcccctctctctgttggctccctggatgatgagcc
                      Tarsier  tcggtcgccgcctcgggcagcacgtggtgggcatggccccactctctgtcggctccctggacgatgggcc
                  Mouse lemur  ttggccgccgcctcgggcagcatgtagtgggcatggctcctctctctgttggctccctggacgatgagcc
            Coquerel's sifaka  ttggccgccgcctcgggcagcatgtggtgggcatggctcctctctctgttggctccctggacgatgagcc
                  Black lemur  ttggccgccgcctcgggcagcatgtggtgggcatggctcctctctccgttggctccctggacgatgagcc
              Sclater's lemur  ttggccgccgcctcgggcagcatgtggtgggcatggctcctctctccgttggctccctggacgatgagcc
                     Bushbaby  tgggccgccgcctcgggcagcatgtggtgggcatggctcctctctctgtcggctccctggacgatgagcc
                        Mouse  ttggccgccgcttggggcagcacgtggtgggcatggcccctctctctgtgggctccctggacgatgagcc
                          Dog  ttggccgccgccttgggcagcatgtggtgggcatggcccctctctctgttggctctttggatgatgagcc
                    Armadillo  ttggccgccgccttgggcagcacgtggtgggcatggcccctctctctgttggctccctggatgatgagcc

                        Human  tgggggagaggcagagactaagatgctgtcccagccgtatttgctggatccctccattaccttggggcag
                        Chimp  tgggggagaggcagagactaagatgctgtcccagccatatttgctggatccctccattaccttggggcag
                       Bonobo  tgggggagaggcagagactaagatgctgtcccagccatatttgctggatccctccattaccttggggcag
                      Gorilla  tgggggagaggcagagactaagatgctgtcccagccgtatttgctggatccctccattaccttggggcag
                    Orangutan  tgggggagaggcagagactaagatgctgtcccagccgtatttgctggatccctccattaccttggggcag
                       Gibbon  tgggggagaggcagagactaagatgctgtcccagccgtacttgctggatccctccattaccttggggcag
                       Rhesus  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
          Crab-eating macaque  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
           Pig-tailed macaque  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
               Sooty mangabey  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
                       Baboon  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
                 Green monkey  tgggggagaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
                        Drill  tgggggggaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
             Proboscis monkey  tgggggagaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
              Angolan colobus  tgggggagaggcagagaccaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
     Golden snub-nosed monkey  tgggggagaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
      Black snub-nosed monkey  tgggggagaggcagagactaagatgttgtcccagccatacttgctggatccctccattaccttggggcag
                     Marmoset  tgggggagaggcagagacgaagatgctgtcccagccctacttgctggatccctccattaccttggggcag
              Squirrel monkey  tgggggagaggcagagaccaagatgctgtcccagccatacttgctggatccctccattacgttggggcag
          White-faced sapajou  tgggggagaggcagagaccaagatgctgtcccagccgtacttgctggatccctccattaccttggggcag
            Ma's night monkey  tgggggagaggcagagaccaagatgctgtcccagccgtacttgctggatccctccattaccctggggcag
                      Tarsier  tgggggagaggcagagaccaagatgctgtcccagccatacttgctggacccctccattaccttgggacag
                  Mouse lemur  tgggggagaggcagagaccaagatgctgtcccagccttacttgctggatccctccatcacactgggacag
            Coquerel's sifaka  tgggggggaggcagagactaagatgctgtcccagccatacttgctgaatccctccattacattgggacag
                  Black lemur  tgggggagaggcagagaccaagatgctgtcccagccatacttgctggatccctccattacattgggacag
              Sclater's lemur  tgggggagaggcagagaccaagatgctgtcccagccatacttgctggatccctccattacattgggacag
                     Bushbaby  tgggggagaggcagagaccaagatgctgtcccagccatacctgctggacccctccattaccctgggacag
                        Mouse  tgggggggagacggagaccaggatgctgccccagccgtacctcctggatccttccattacactggggcag
                          Dog  tgggggagaggcggaaaccaagatgctgtcccagccatacttgctggatccctccatcacattgggacag
                    Armadillo  tgggggagaggcagaaaccaagatgctgtctcagccctacttgctggatccctccatcacattgggacag

                        Human  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                        Chimp  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                       Bonobo  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                      Gorilla  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                    Orangutan  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                       Gibbon  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                       Rhesus  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
          Crab-eating macaque  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
           Pig-tailed macaque  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
               Sooty mangabey  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                       Baboon  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                 Green monkey  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                        Drill  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
             Proboscis monkey  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
              Angolan colobus  tatgtgcagcctcagggggtgtccgtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
     Golden snub-nosed monkey  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
      Black snub-nosed monkey  tatgtgcagcctcagggggtgtcggtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                     Marmoset  tatgtgcagcctcagggtgtgtcagtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
              Squirrel monkey  tatgtgcagcctcagggagtgtcagtagtagactttgtacggtttgaatgtggagaaggtgaagaggcag
          White-faced sapajou  tatgtgcagcctcagggagtgtcagtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
            Ma's night monkey  tatgtgcagcctcagggagtgtcagtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                      Tarsier  tatgtacagccccagggcgtgtctgtggtagacttcgtgcgctttgaatgtggagaaggtgaagagccag
                  Mouse lemur  tatgtgcagccccagggggtgtctgtgatagacttcgtgcggtttgaatgtggagaaggtgaagaggcag
            Coquerel's sifaka  tatgtgcagcaccagggggtgtctgtaatagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                  Black lemur  tatgtacagccccagggggtgtctgtgatagacttcgtgcggtttgaatgtggagaaggtgaagaggcag
              Sclater's lemur  tatgtacagccccagggggtgtctgtgatagacttcgtgcggtttgaatgtggagaaggtgaagaggcag
                     Bushbaby  tatgtgcagccccggggggtgtctgtggtagactttgtgcggtttgagtgtggagaaggtgaagaggcca
                        Mouse  tacgtgcagccccagggcgtgactgtagtggacttcgtgcgcttcgaatgtggagaagacgaacaggtgg
                          Dog  tatgtgcagcctcaaggggtgtccgtagtagactttgtgcggtttgaatgtggagaaggtgaagaggcag
                    Armadillo  tatgtgcagcctcagggggtgtccgtagtagactttgtgcggtttgaatgtggagaaggtgaagaggctg

                        Human  cagaaactgaataggttccagagacttttggcccagga-gg-aatattt-acttttagctctggacatca
                        Chimp  cagaaactgaataggttccagagacttttggcccagga-gg-aatattt-acttttagctctggacatca
                       Bonobo  cagaaactgaataggttccagagacttttggcccagga-gg-aatattt-acttttagctctggacatca
                      Gorilla  cagaaactgaataggttccagagacttttggcccagga-gg-aatattt-acttttagctctggacatca
                    Orangutan  cagaaactgaataggttccagagacttttggcccagga-gg-aatattt-acttttagctctggacatca
                       Gibbon  cagaaactgagtaggttccagagacttttggcccagga-gg-aatattt-atttatagctctggatatca
                       Rhesus  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
          Crab-eating macaque  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
           Pig-tailed macaque  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
               Sooty mangabey  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
                       Baboon  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
                 Green monkey  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctccggacatca
                        Drill  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
             Proboscis monkey  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
              Angolan colobus  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
     Golden snub-nosed monkey  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacgtca
      Black snub-nosed monkey  cagaaactgaataggttctagagactttcggcccagga-gg-aatattt-atttttagctctggacatca
                     Marmoset  cagaaactgaataggttccagagacttttggcccaggg-gg-agtattt-gtttttagatctgaacatca
              Squirrel monkey  cagaaactgaataggttccagagacttttggcccagga-gg-agtgctt-gtttttagctctggacatca
          White-faced sapajou  cagaaactgagtaggttccagagacttttggcccagga-gg-agtattt-gtttttagctctggacatca
            Ma's night monkey  cagaaactgaataggttccagagacttttggcccagga-gg-agtattt-gtttttagctttggacatca
                      Tarsier  cagaggccgagtaggttccagaggcttt-ggcccagga-gg-aatgt-----ttttggctctggacatca
                  Mouse lemur  cagaggctgaataggttccagagacctttggcccagga-gg-aatgttt-atttttatttctggacatca
            Coquerel's sifaka  cagaggctgaataggttccagagacttttagcccagga-ga-aatgttt-atttttagttctggacatca
                  Black lemur  cagaggctgaataggttccagagacttttggcccagaa-gg-aatgttt-atttttagttctggacatca
              Sclater's lemur  cagaggctgaatagattccagagacttttggcccagaa-gg-aatgttt-atttttagttctggacatca
                     Bushbaby  cagaggctggatagg-tctgcaggcttgtggcccagga-gg-aatg-tt-atgtttagttctggatatca
                        Mouse  ccgaggctgaataggtt---------tttggcctaagt-ggaaatatttaatttttatatctggatttcc
                          Dog  cagaaaccgaataggttccggagactt--ggcccagga-ga---tgttt-attctttgctctggacatca
                    Armadillo  aagaggttgaataggttccagagacttttggcccaggatga-aatgttt-attcctagctctg-ccatca

                        Human  ttac-aaaa
                        Chimp  ttacaaaaa
                       Bonobo  ttacaaaaa
                      Gorilla  ttac-aaaa
                    Orangutan  ttac-aaaa
                       Gibbon  ttac-aaaa
                       Rhesus  ttac-aaaa
          Crab-eating macaque  ttac-aaaa
           Pig-tailed macaque  ttac-aaaa
               Sooty mangabey  ttac-aaaa
                       Baboon  ttac-aaaa
                 Green monkey  ttac-aaaa
                        Drill  ttac-aaaa
             Proboscis monkey  ttac-aaaa
              Angolan colobus  ttac-aaaa
     Golden snub-nosed monkey  ttac-aaaa
      Black snub-nosed monkey  ttac-aaaa
                     Marmoset  ttac-aaaa
              Squirrel monkey  ttac-aaaa
          White-faced sapajou  ttac-aaaa
            Ma's night monkey  ttac-aaaa
                      Tarsier  tgaa-aaaa
                  Mouse lemur  ttac-aaaa
            Coquerel's sifaka  ttac-aaaa
                  Black lemur  ttac-aaaa
              Sclater's lemur  ttac-aaaa
                     Bushbaby  ttac-aaaa
                        Mouse  ttat-aaaa
                          Dog  ttcc-gaga
                    Armadillo  ttgc-aaaa

Inserts between block 6 and 7 in window
                 Mouse lemur 1bp
           Coquerel's sifaka 450bp
                 Black lemur 1bp
             Sclater's lemur 1bp

Alignment block 7 of 323 in window, 57796645 - 57796716, 72 bps 
B D                     Human  -aggaatatttcccaaacctcttcagaccgagaatg----------------------------------
B D                     Chimp  -aggaatatttcccaaacctcttcagaccgagaatg----------------------------------
B D                    Bonobo  -aggaatatttcccaaacctcttcagaccgagaatg----------------------------------
B D                   Gorilla  -aggaatatttcccaaacctcttcagaccgagaatg----------------------------------
B D                 Orangutan  -aggaatatttcccaagcctcttcagaccgagaatg----------------------------------
B D                    Gibbon  -aggaatatttcccaagcctcttcagaccgagaatg----------------------------------
B D                    Rhesus  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgagtt-ataacgag
B D       Crab-eating macaque  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgagtt-ataacgag
           Pig-tailed macaque  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgagtt-ataacgag
               Sooty mangabey  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgcgtt-ataacgag
                       Baboon  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgcatt-ataacgag
B D              Green monkey  -aggagtatttcccaagcctcttcagaccgagaatgtattttt--------catttgagtt-ataacaag
                        Drill  -aggagtatttcccaagcctcttcagactgagaatgtattttt--------catttgcgtt-ataacgag
B D          Proboscis monkey  -aggagtatttcccaagcctcttcagaccgagaatgtattttt--------catttgagtt-acaacgag
              Angolan colobus  -aggagtatttcccaagcctcttcagaccgagaatgtattttt--------catttgagtt-ataacgag
B D  Golden snub-nosed monkey  ----agtatttcccaagcctcttcagaccgagaatgtattttt--------catttgagtt-acaacgag
      Black snub-nosed monkey  ----agtatttcccaagcctcttcagaccgagaatgtattttt--------catttgagtt-acaacgag
B D                  Marmoset  -aggattttttcccaagcctcttcagacccagaatttattttt--------catttgaatt-ataatgag
B D           Squirrel monkey  -agga-tctttcccaagccttttcagacccagaatttattttt--------catttgaatt-ataatgag
          White-faced sapajou  -aggattctttcccaagcctcttcagacccagaatttattttt--------catttgaatt----atgag
            Ma's night monkey  -aggattctttcccaagcctcttcagacccagaatttattttt--------catttgaatt-ataatgag
B D                   Tarsier  -gaagttattttctaagcctcttcaaacctagaatttattttt--------tgtttgagtttataataaa
                  Mouse lemur  -gaagttatttcctaagcctcttcaaactcagaatttgttttt--------catttgaatttataatgaa
                  Black lemur  -gaagttgtttcctaagcctcttcaaactcagaatttgttttt--------catttgaatttataatgaa
              Sclater's lemur  -gaagttgtttcctaagcctcttcaaactcagaatttgttttt--------catttgaatttataatgaa
B D                  Bushbaby  --agggtatttcctaagtctcttcaaactcaaattttgttttt--------catttgagtttataataaa
B D                     Mouse  ---agttattttctaaacctcttcaaccctcaaatttgttttttttttttcctttttagtttaaaatgaa
B D                       Dog  ---agttatttcctcagcctctacaaacccagaatttgttttt--------cattggagtttataatgca
B D                 Armadillo  agaagttatttcctaagcctcttcaaactcagaatttgctttt--------catttgaatttatagtgaa
           Coquerel's sifaka  ======================================================================

                        Human  -----------catgggtaaaattattaaata-----gttgtataataaaa-----at
                        Chimp  -----------catgggtaaaattattaaata-----gttgtataataaaa-----at
                       Bonobo  -----------catgggtaaaattattaaata-----gttgtataataaaa-----at
                      Gorilla  -----------catgggtaaaattattaaata-----gttgtataataaaa-----at
                    Orangutan  -----------catgggtaaaattattaaata-----gttatataataaaa-----at
                       Gibbon  -----------catgggtaaaattattaaata-----gttatataataaaa-----at
                       Rhesus  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
          Crab-eating macaque  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
           Pig-tailed macaque  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
               Sooty mangabey  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
                       Baboon  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
                 Green monkey  attgtagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
                        Drill  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
             Proboscis monkey  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
              Angolan colobus  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
     Golden snub-nosed monkey  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
      Black snub-nosed monkey  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
                     Marmoset  attatagacttcatgggtaaaattattaaata-----gttatataataaaa-----at
              Squirrel monkey  attatagacttcataggtacaattattaaata-----gttatataataaa--------
          White-faced sapajou  attatagactttatgggtaaaattat----ta-----gttatataataaaa-----at
            Ma's night monkey  attatagacttcatgggtaaaattattaaata-----gttacataataaaa-----at
                      Tarsier  attgtatgcgtcatgggt--agttactaaatacaatcattatataataaaaagagcag
                  Mouse lemur  agtacataattcatgggtaaaggtattaaataaaatagttatatgataaaa-----ag
                  Black lemur  attacataattcatgggtaaaggtattaaataaaatagttacataataaaa-----ag
              Sclater's lemur  attacataattcatgggtaaaggtattaaataaaatagttacataataaaa-----ag
                     Bushbaby  atcatatacttcatgagtaaagttattaaataaaatagttacataattaaa-----ag
                        Mouse  gatatataat-catgggtaaagttattaaatg-----gtgatgtaataaag-----a-
                          Dog  atgatatcctcagtgggaagagtcattaaataaaattgctatataataaag-----ag
                    Armadillo  attatatatttcatgggtaaaggtattaaataaaattgtcatatggtaaag-----aa
            Coquerel's sifaka  ==========================================================

Inserts between block 7 and 8 in window
                 Mouse lemur 5bp
                 Black lemur 4bp
             Sclater's lemur 4bp
B D                 Bushbaby 2bp
B D                      Dog 5bp

Alignment block 8 of 323 in window, 57796717 - 57796746, 30 bps 
B D                     Human  -----aa------ttttt---tccttgtttgcgtaat-actggat
B D                     Chimp  -----aa------ttttt---tccttgtttgcgtaat-actggat
B D                    Bonobo  -----aa-------tttt---tccttgtttgcgtaat-actggat
B D                   Gorilla  -----aa------ttttt---tccttgtttgcgtaat-actggat
B D                 Orangutan  -----aa------ttttt---tccttgtttgtgtaat-actggat
B D                    Gibbon  -----aa------ttttt---tccttgtttgcataataactggat
B D                    Rhesus  -----aa------ttttt---tccttgtttgcataat-actgggt
B D       Crab-eating macaque  -----aa------ttttt---tccttgtttgcataat-actgggt
           Pig-tailed macaque  -----aa------ttttt---tccttgtttgcataat-actgggt
               Sooty mangabey  -----aa------ttttt---tccttgtttgcataat-actgggt
                       Baboon  -----aa------ttttt---tccttgtttgcataat-actgggt
B D              Green monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
                        Drill  -----aa------ttttt---tccttgtttgcataat-actgggt
B D          Proboscis monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
              Angolan colobus  -----aa------ttttt---tccttgtttgcataat-actgggt
B D  Golden snub-nosed monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
      Black snub-nosed monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
B D                  Marmoset  -----aa------ttttt---tccttgtttgcataat-actgggt
B D           Squirrel monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
          White-faced sapajou  -----aa------ttttt---tccttgtttacgtaat-actgggt
            Ma's night monkey  -----aa------ttttt---tccttgtttgcataat-actgggt
B D                   Tarsier  -----aa------ttttt---tccatgtttgtataat-accaggt
                  Mouse lemur  -----aa------ttttt---tccatgtttgtataaa-actgggt
            Coquerel's sifaka  -----aa------ttttt---tccatgtttgcataat-actgggt
                  Black lemur  -----ga------atttt---tccatgtttgcttaat-actgggt
              Sclater's lemur  -----ga------atttt---tccatgtttgcttaat-actgggt
B D                  Bushbaby  -----ga------attttttctccttgtttgcataat-actaggt
B D                     Mouse  --------------attt---ttctcatttgtatagt-gcttaat
B D                       Dog  -----aa------tctct---tccttgcttgtgtaat-gctgggt
B D                 Armadillo  agtagaatgatcttttct---tccttgtgtgggtagt-cctgggt

Inserts between block 8 and 9 in window
B D                    Mouse 87bp

Alignment block 9 of 323 in window, 57796747 - 57796761, 15 bps 
B D                     Human  ttagcttttctgtgc
B D                     Chimp  ttagcttttctgtgc
B D                    Bonobo  ttagcttttctgtgc
B D                   Gorilla  ttagcttttctgtgc
B D                 Orangutan  ttagcttttctgtgc
B D                    Gibbon  ttagcttttctgtgc
B D                    Rhesus  ttagcttttctgtgc
B D       Crab-eating macaque  ttagcttttctgtgc
           Pig-tailed macaque  ttagcttttctgtgc
               Sooty mangabey  ttagcttttctgtgc
                       Baboon  ttagcttttctgtgc
B D              Green monkey  ttagcttttctgtgc
                        Drill  ttagcttttctgtgc
B D          Proboscis monkey  ttagcttttctgtgc
              Angolan colobus  ttagcttttctgtgc
B D  Golden snub-nosed monkey  ttagcttttctgtgc
      Black snub-nosed monkey  ttagcttttctgtgc
B D                  Marmoset  ttagcttttctatgt
B D           Squirrel monkey  ttagcttttctgtgt
          White-faced sapajou  ttagcttttctatgt
            Ma's night monkey  ttagcttttctatgt
B D                   Tarsier  ttagcttttttgtgc
                  Mouse lemur  ttagcttttttgtgc
            Coquerel's sifaka  ttagctgttttgtgc
                  Black lemur  ttagcttttttgtgc
              Sclater's lemur  ttagcttttttgtgc
B D                  Bushbaby  ttagcttttttgtgc
B D                       Dog  ttagctcttttgcgc
B D                 Armadillo  ttagcttttttgtgc
B D                     Mouse  ===============

Inserts between block 9 and 10 in window
B D                 Marmoset 14bp
B D          Squirrel monkey 14bp
         White-faced sapajou 34bp
B D                  Tarsier 15bp
B D                Armadillo 15bp

Alignment block 10 of 323 in window, 57796762 - 57796764, 3 bps 
B D                     Human  ctt-
B D                     Chimp  ctt-
B D                    Bonobo  ctt-
B D                   Gorilla  ctt-
B D                 Orangutan  c-t-
B D                    Gibbon  c-t-
B D                    Rhesus  ctc-
B D       Crab-eating macaque  ctc-
           Pig-tailed macaque  ctc-
               Sooty mangabey  ctt-
                       Baboon  ctt-
B D              Green monkey  ctt-
                        Drill  ctt-
B D          Proboscis monkey  ctt-
              Angolan colobus  ctt-
B D  Golden snub-nosed monkey  ctt-
      Black snub-nosed monkey  ctt-
B D                  Marmoset  ctt-
B D           Squirrel monkey  ctt-
            Ma's night monkey  ctt-
B D                   Tarsier  ct--
                  Mouse lemur  ctt-
            Coquerel's sifaka  ctt-
                  Black lemur  ctt-
              Sclater's lemur  ctt-
B D                  Bushbaby  ctt-
B D                       Dog  ctt-
B D                 Armadillo  -ttt
         White-faced sapajou  ====
B D                     Mouse  ====

Inserts between block 10 and 11 in window
           Ma's night monkey 31bp
B D                      Dog 11bp

Alignment block 11 of 323 in window, 57796765 - 57796766, 2 bps 
B D                     Human  tc
B D                     Chimp  tc
B D                    Bonobo  tc
B D                   Gorilla  tc
B D                 Orangutan  tc
B D                    Gibbon  tt
B D                    Rhesus  tc
B D       Crab-eating macaque  tc
           Pig-tailed macaque  tc
               Sooty mangabey  tc
                       Baboon  tc
B D              Green monkey  tc
                        Drill  tc
B D          Proboscis monkey  tc
              Angolan colobus  tc
B D  Golden snub-nosed monkey  tc
      Black snub-nosed monkey  tc
B D                  Marmoset  tt
B D           Squirrel monkey  tt
B D                   Tarsier  tt
                  Mouse lemur  tt
            Coquerel's sifaka  tc
                  Black lemur  tc
              Sclater's lemur  tc
B D                  Bushbaby  gt
B D                       Dog  ta
B D                 Armadillo  ta
         White-faced sapajou  ==
B D                     Mouse  ==
           Ma's night monkey  ==

Inserts between block 11 and 12 in window
                 Mouse lemur 14bp
           Coquerel's sifaka 16bp
                 Black lemur 13bp
             Sclater's lemur 13bp
B D                 Bushbaby 15bp

Alignment block 12 of 323 in window, 57796767 - 57796767, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                    Bonobo  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
           Pig-tailed macaque  a
               Sooty mangabey  a
                       Baboon  a
B D              Green monkey  a
                        Drill  a
B D          Proboscis monkey  a
              Angolan colobus  a
B D  Golden snub-nosed monkey  a
      Black snub-nosed monkey  a
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                   Tarsier  t
                  Mouse lemur  g
                  Black lemur  g
              Sclater's lemur  g
B D                  Bushbaby  g
B D                       Dog  g
B D                 Armadillo  g
           Coquerel's sifaka  =
         White-faced sapajou  =
B D                     Mouse  =
           Ma's night monkey  =

Alignment block 13 of 323 in window, 57796768 - 57796776, 9 bps 
B D                     Human  aaaacaaca
B D                     Chimp  aaaacaaca
B D                    Bonobo  aaaacaaca
B D                   Gorilla  aaaacaaca
B D                 Orangutan  aaaacaaca
B D                    Gibbon  aaaacaaca
B D                    Rhesus  aaaataacg
B D       Crab-eating macaque  aaaataacg
           Pig-tailed macaque  aaaataacg
               Sooty mangabey  aaaataacg
                       Baboon  aaaataacg
B D              Green monkey  aaaataacg
                        Drill  aaattaacg
B D          Proboscis monkey  aaaataacg
              Angolan colobus  aaaataacg
B D  Golden snub-nosed monkey  aaaataacg
      Black snub-nosed monkey  aaaataacg
B D                  Marmoset  aaaataacc
B D           Squirrel monkey  aaaataacc
B D                   Tarsier  aaaacaaca
                  Mouse lemur  aaaacaaca
            Coquerel's sifaka  aaaacaaca
                  Black lemur  aaaacaaca
              Sclater's lemur  aaaacaaca
B D                  Bushbaby  aaaacagca
B D                       Dog  gaaacagca
B D                 Armadillo  taaacaaca
         White-faced sapajou  =========
B D                     Mouse  =========
           Ma's night monkey  =========

Inserts between block 13 and 14 in window
B D                 Marmoset 5bp
B D          Squirrel monkey 5bp

Alignment block 14 of 323 in window, 57796777 - 57796793, 17 bps 
B D                     Human  ggtgggccttattgacg
B D                     Chimp  ggtgggccttattgacg
B D                    Bonobo  ggtgggccttattgacg
B D                   Gorilla  ggtgggccttattgacg
B D                 Orangutan  gatgggccttattgacg
B D                    Gibbon  ggcgggccttattgacg
B D                    Rhesus  ggcgggccttattgacg
B D       Crab-eating macaque  ggcgggccttattgacg
           Pig-tailed macaque  ggcgggccttattgacg
               Sooty mangabey  ggcgggccttattgacg
                       Baboon  ggcgggccttattgacg
B D              Green monkey  ggcgggccttattgacg
                        Drill  ggcgggccttattgacg
B D          Proboscis monkey  ggcgggccttattgaca
              Angolan colobus  ggcgggccttattgacg
B D  Golden snub-nosed monkey  ggcgggccttattgacg
      Black snub-nosed monkey  ggcgggccttattgacg
B D                  Marmoset  gataggccttactgaca
B D           Squirrel monkey  gataggccttactgaca
          White-faced sapajou  gataggccttactgaca
            Ma's night monkey  gataggccttactgaca
B D                   Tarsier  ggcaggccttatggacg
                  Mouse lemur  ggtgggccttattgatg
            Coquerel's sifaka  agtgggccttattgatg
                  Black lemur  ggtgggccttattgatg
              Sclater's lemur  ggtgggccttattgatg
B D                  Bushbaby  ggtgagctgtagtgatg
B D                       Dog  ggcaggccgtatggagg
B D                 Armadillo  aattgcccttgttggtt
B D                     Mouse  =================

Inserts between block 14 and 15 in window
                 Mouse lemur 36bp
           Coquerel's sifaka 4bp
                 Black lemur 4bp
             Sclater's lemur 4bp
B D                 Bushbaby 3bp
B D                Armadillo 2bp

Alignment block 15 of 323 in window, 57796794 - 57796823, 30 bps 
B D                     Human  tgat----agtgtcgtggagaacaggcatcaaca
B D                     Chimp  tgat----agtgtcttggagaacaggcatcaaca
B D                    Bonobo  tgat----agtgtcttggagaacaggcatcaaca
B D                   Gorilla  tgat----agtgtcttggagaacaggcatcaaca
B D                 Orangutan  tgat----agtgtcttggagaacaggcatcaaca
B D                    Gibbon  tgat----agtgtcttggagaacaggcatcaaca
B D                    Rhesus  tgattgacagtgtcttggagaacaggcatcaaca
B D       Crab-eating macaque  tgattgacagtgtcttggagaacaggcatcaaca
           Pig-tailed macaque  tgattgacagtgtcttggagaacaggcatcaaca
               Sooty mangabey  tgattgacagtgtcttggagaacaggcatcaaca
                       Baboon  tgattgacagtgtcttggagaacaggcatcaaca
B D              Green monkey  tgattgacagtgtcttggagaacaggcatcaaca
                        Drill  tgattgacagtgtcttggagaacaggcatcaaca
B D          Proboscis monkey  tgattgacagtgtcttggagaacaggtatcaaca
              Angolan colobus  tgattgacagtgtcttggagaacaggtatcaaca
B D  Golden snub-nosed monkey  tgattgacagtgtcttggagaacaggtatcaaca
      Black snub-nosed monkey  tgattgacagtgtcttggagaacaggtatcaaca
B D                  Marmoset  tgattgacagtgtctcggagaatgggcatcaac-
B D           Squirrel monkey  tgattgacagtgtctcggagaacgggcatcaaca
          White-faced sapajou  tgattgacagtgtctcggagaacggccatcaaca
            Ma's night monkey  tgattgacagtgtcttggagaacgggcatcaaca
B D                   Tarsier  tgtcgggcagtggcttggagaacaggcagcagta
            Coquerel's sifaka  ----tggcagtgtcttcaaaaacaggcatcaacg
                  Black lemur  ----tgacggtgtcttggagaacaggcatcgaca
              Sclater's lemur  ----tgacggtgtcttggagaacaggcatcgaca
B D                  Bushbaby  ----agacagtgtcttgg-gaacagacattaaca
B D                       Dog  tggccgacggggtctgagagagcaggcatgagca
B D                 Armadillo  ----tgaaagcatctgggagaacaggcatcaaca
                 Mouse lemur  ==================================
B D                     Mouse  ==================================

Inserts between block 15 and 16 in window
           Coquerel's sifaka 3bp
                 Black lemur 3bp
             Sclater's lemur 3bp
B D                 Bushbaby 3bp
B D                      Dog 3bp

Alignment block 16 of 323 in window, 57796824 - 57796838, 15 bps 
B D                     Human  ---atactgctgctccct
B D                     Chimp  ---atactgctgctccct
B D                    Bonobo  ---atactgctgctccct
B D                   Gorilla  ---atactgctgctccct
B D                 Orangutan  ---atactgctgctccct
B D                    Gibbon  ---atactgctgctccct
B D                    Rhesus  ---atactgctgctccct
B D       Crab-eating macaque  ---atactgctgctccct
           Pig-tailed macaque  ---atactgctgctccct
               Sooty mangabey  ---atactgctgctccct
                       Baboon  ---atactgctgctccct
B D              Green monkey  ---atactgctgctccct
                        Drill  ---atactgctgctccct
B D          Proboscis monkey  ---atactgctgctccct
              Angolan colobus  ---atactgctgctccct
B D  Golden snub-nosed monkey  ---atactgctgctccct
      Black snub-nosed monkey  ---atactgctgctccct
B D                  Marmoset  ---attctgctgctccct
B D           Squirrel monkey  ---attctgctgctccct
          White-faced sapajou  ---att---ctgctccct
            Ma's night monkey  ---attctgctgctccct
B D                   Tarsier  ---a-------------t
                  Mouse lemur  ---atgctgctgctgcct
            Coquerel's sifaka  ---atgctgctactccct
                  Black lemur  ---atgctgctactccct
              Sclater's lemur  ---atgctgctactccct
B D                  Bushbaby  ---atgctgctattccct
B D                       Dog  ---gtgctgttgctt---
B D                 Armadillo  attgtgctgctgctccct
B D                     Mouse  ==================

Alignment block 17 of 323 in window, 57796839 - 57796857, 19 bps 
B D                     Human  tcaacat---------------------------------------------------------------
B D                     Chimp  tcaacat---------------------------------------------------------------
B D                    Bonobo  tcaacat---------------------------------------------------------------
B D                   Gorilla  tcaacat---------------------------------------------------------------
B D                 Orangutan  tcaacat---------------------------------------------------------------
B D                    Gibbon  tcaacat---------------------------------------------------------------
B D                    Rhesus  tcaacat---------------------------------------------------------------
B D       Crab-eating macaque  tcaacat---------------------------------------------------------------
           Pig-tailed macaque  tcaacat---------------------------------------------------------------
               Sooty mangabey  tcaacat---------------------------------------------------------------
                       Baboon  tcaacat---------------------------------------------------------------
B D              Green monkey  tcaacat---------------------------------------------------------------
                        Drill  tcaacat---------------------------------------------------------------
B D          Proboscis monkey  tcaacat---------------------------------------------------------------
              Angolan colobus  tcaatat---------------------------------------------------------------
B D  Golden snub-nosed monkey  tcaacat---------------------------------------------------------------
      Black snub-nosed monkey  tcaacat---------------------------------------------------------------
B D                  Marmoset  tcaacat---------------------------------------------------------------
B D           Squirrel monkey  tcaacat---------------------------------------------------------------
          White-faced sapajou  tcaacat---------------------------------------------------------------
            Ma's night monkey  tcaacat---------------------------------------------------------------
B D                   Tarsier  tccacat---------------------------------------------------------------
                  Mouse lemur  tcaacat---------------------------------------------------------------
            Coquerel's sifaka  tcaacat---------------------------------------------------------------
                  Black lemur  tcaacat---------------------------------------------------------------
              Sclater's lemur  tcaacat---------------------------------------------------------------
B D                  Bushbaby  ttgacattgtgtcctaaagttacttttcctcctttcctgtccttttccttttcctttcccctccctttcc
B D                     Mouse  cctatac---------------------------------------------------------------
B D                       Dog  -----ac---------------------------------------------------------------
B D                 Armadillo  tcagcgt---------------------------------------------------------------

                        Human  ---------------------agatttattatg
                        Chimp  ---------------------agatttattatg
                       Bonobo  ---------------------agatttattatg
                      Gorilla  ---------------------agatttattatg
                    Orangutan  ---------------------agatttattatg
                       Gibbon  ---------------------agatttattatg
                       Rhesus  ---------------------agatttattatg
          Crab-eating macaque  ---------------------agatttattatg
           Pig-tailed macaque  ---------------------agatttattatg
               Sooty mangabey  ---------------------agatttattatg
                       Baboon  ---------------------agatttattatg
                 Green monkey  ---------------------agatttattatg
                        Drill  ---------------------agatttattatg
             Proboscis monkey  ---------------------agatttattatg
              Angolan colobus  ---------------------agatttattatg
     Golden snub-nosed monkey  ---------------------agatttattatg
      Black snub-nosed monkey  ---------------------agatttattatg
                     Marmoset  ---------------------agatttattatg
              Squirrel monkey  ---------------------agatttattatg
          White-faced sapajou  ---------------------agatttattatg
            Ma's night monkey  ---------------------agatttattatg
                      Tarsier  ---------------------ggatgtactggg
                  Mouse lemur  ---------------------ggatttattatg
            Coquerel's sifaka  ---------------------ggatttattatg
                  Black lemur  ---------------------ggatttattatg
              Sclater's lemur  ---------------------ggatttattatg
                     Bushbaby  ctttcctttttttaatgagacagttttactctg
                        Mouse  ---------------------cagtctattata
                          Dog  ---------------------cgatttatcatg
                    Armadillo  ---------------------aagtttattatg

Inserts between block 17 and 18 in window
B D                 Bushbaby 267bp

Alignment block 18 of 323 in window, 57796858 - 57797280, 423 bps 
B D                     Human  gtatttct-gaaatttctaacttatatgttctgtcttacaccttttatgacatagaactc-ttttgttct
B D                     Chimp  gtatttct-gaaatttctaacttacaagttctgtcttacaccttttatgacatagaactc-ttttgttct
B D                    Bonobo  gtatttct-gaaatttctaacttacaagttctgtcttacaccttttatgacatagaactc-ttttgttct
B D                   Gorilla  gtatttct-gaaatttctaacttacatgttctgtcttacaccttttatgacatagaactc-ttttgttct
B D                 Orangutan  gtatttct-gaaatttctaacttacatgttctgtcttacaccttttatgacatagaattc-ttttgttct
B D                    Gibbon  gtatttct-gaaatttctaacttacatgttctgtcttacaccttttatgacatagaactc-ttttgttct
B D                    Rhesus  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
B D       Crab-eating macaque  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
           Pig-tailed macaque  gtgtttct-gaaatttctaacttacatgttctgtcgtccaccttttatgacatagaattc-tt---ttct
               Sooty mangabey  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
                       Baboon  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
B D              Green monkey  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
                        Drill  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
B D          Proboscis monkey  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tc---ttct
              Angolan colobus  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
B D  Golden snub-nosed monkey  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
      Black snub-nosed monkey  gtgtttct-gaaatttctaacttacatgttctgtcttccaccttttatgacatagaattc-tt---ttct
B D                  Marmoset  gtatttct-taaatttctatcttacgtgttctgtcttaccccttttatgacatagaactc-ttttgttct
B D           Squirrel monkey  gtatttct-gaaatttctaacttacgtgttctgtcttatcccttttatgacacagaactc-ttttgttct
          White-faced sapajou  gtatttct-gaaatttctaacttgcgtgttctgtcttaccccatttatgacatagaactctttttgttct
            Ma's night monkey  gtatttct-gaaatttctaacttacgtgttctgtcttgccccttttatgacatagaactc-ttttgttct
B D                   Tarsier  gtgtcctt-gagacctctgactcgcacgttctgtctttctccttatgtgacttagcactc-tt--aatct
                  Mouse lemur  gtgtccct-gaaatttctaactcacacattctatcttactccttctgtgaaatagaactc-ttttgttct
            Coquerel's sifaka  gtgtccct-gaaatttctaactcatacattctatcttactccttctgtgagatagaactc-ttttgttct
                  Black lemur  gtgtccct-gaaatttctaactcacacattctatcttactccttctgtgagatagaactc-ttttgttct
              Sclater's lemur  gtgtccct-gaaatttctaactcacacattctatcttactccttctgtgagatagaactc-ttttgttct
B D                  Bushbaby  gtactcct-gaaacttttagcttaaacattctgtgttactccttctgtgacctggaactc----tgttct
B D                     Mouse  -taattctggaagtttctaacaca------ctgtcttgttcc---tgtgacaaagatctc-ca---ctct
B D                       Dog  gtacccct-aaaatttctacctcagtttctctg--------------tgacccagcactc-ct--attct
B D                 Armadillo  gtgtctca-caaattcatagctcacccattctatcttaggccttctgtgacatagtgcta-tctagttct

                        Human  gtttttgctttgcgacac-tgtgaaccgtgcttctgcctcggaacc-tccctagttatattacttgtgcc
                        Chimp  gtttttgctttgcgacac-tgtgaaccgtgcttctgcctcggaacc-tccctagttatattacttgtgcc
                       Bonobo  gtttttgctttgcgacac-tgtgaaccgtgcttctgcctcggaacc-tccctagttatattacttgtgcc
                      Gorilla  gtttttgctttgcgacac-tgtgaaccgtgcttctgcctcggaacc-tccctagttatattacttgtgcc
                    Orangutan  gtttttgctttgcgacac-cgtgaaccgtgcttctgcctcagaacc-tctctagttatattacttctgcc
                       Gibbon  gtttttgctttgcgacac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
                       Rhesus  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
          Crab-eating macaque  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
           Pig-tailed macaque  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
               Sooty mangabey  ctttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
                       Baboon  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
                 Green monkey  gtttttgctttgccatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
                        Drill  gtttttgctttgcggtac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
             Proboscis monkey  gtttttgctttgtgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
              Angolan colobus  gtttttgctttgcgatac-tgtggaccatgcttctgcctcagaacc-tccctagttatattacttctgcc
     Golden snub-nosed monkey  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
      Black snub-nosed monkey  gtttttgctttgcgatac-tgtggaccatgcttctgcctcggaacc-tccctagttatattacttctgcc
                     Marmoset  gctttcactttgcgacat---tggaccatgcttctgccttggaacc-tccctagttatattacttctgcc
              Squirrel monkey  gctttcattttgcaacac---tggaccatgcttctgccttggaacc-tccctagttatattacttctgcc
          White-faced sapajou  gctttcactttgcaacac---tggaccatgcttctgccttggaacc-tccctagttatattacttctgcc
            Ma's night monkey  gctttcactttgcgacac---tggaccatgcttctgtcttggaaccaaccctagttatattacttctgcc
                      Tarsier  gcttttgctttgtgacag-tttaggctatgcttctaccctggaact-tccctggttacattacttctgcc
                  Mouse lemur  gctttcactgcgtgacac-tttaaactatgcttctgccatggaact-tccccagttatattacttctgcc
            Coquerel's sifaka  cctttcactgtgtgacac-tttgaactatgcttctaccctggaact-tccccagttatattacttctgcc
                  Black lemur  gctttcactgtgtgacac-tttgaactgtgcttctaccctggaact-tccccagttatattacttctgcc
              Sclater's lemur  gctttcactgtgtgacac-tttgaactgtgcttctaccctggaact-tccccagttatattacttctgcc
                     Bushbaby  gctttcactttgtaacac-tttgaactcaggttttgccctggaact-tcctcacttacattacttctgct
                        Mouse  gtgttgactctgtgacat-tttggaccatgtatcttccctggaac--tacctagcagtatt--tcctgtc
                          Dog  gctttcactttggggtgc-ttcgggctgtgctgctctcctggaact-tccccagttacattacttgggcc
                    Armadillo  g-------------acatgtttggtctatgcttttaccctggaact-tctccagttacattacttctgtt

                        Human  acatggatttctttaggattattgattcaaacct-agagttgtctggaaaatgtgggttctcttctttgt
                        Chimp  acatggatttctttgggattattgattcaaacct-agagttgtctggaaaatgtgggttctcttctttgt
                       Bonobo  acatggatttctttgggattattgattcaaacct-agagttgtctggaaaatgtgggttctcttctttgt
                      Gorilla  atatggatttctttgggattattgattcaaacct-agagttgtctggaaaatgtgggttctcttctttgt
                    Orangutan  acatggatttctttgggattattgattcaaatct-agagttgtctggaaaatgtgggttctcttctttgt
                       Gibbon  acatggatttctttgggattattgattcaaacct-agagttgtctggaaaatgtgggttctcttctttgt
                       Rhesus  acatggaattctttgggattactgattcaaacct-agagttgtctggaaactatgggttctcttctttgt
          Crab-eating macaque  acatggaattctttgggattactgattcaaacct-agagttgtctggaaactatgggttctcttctttgt
           Pig-tailed macaque  acatggaattctttgggattactgattcaaacct-agagttgtctggaaactatgggttctcttctttgt
               Sooty mangabey  acatggaattctttgggattactgattcaaacct-agagttgtctggaaactgtgggttctcttctttgt
                       Baboon  acatggaattctttgggattactgattcaaacct-agagttgtctggaaactgtgggttctcttctttgt
                 Green monkey  acatggaattcttcgggattactgattcgaacct-agagttgtctggaaactgtgggttctcttctttgt
                        Drill  acatggaattctttgggattactgattcaaacct-agagttgtctggaagctgtgggttctcttctttgt
             Proboscis monkey  acatgaaattctttgggattactgattcaaacct-agagttgtctggaaactgtgggttctcttctttgt
              Angolan colobus  acatgaaattttttgggattactgattcaaacct-agagttgtctgggaactgtgggttctcttctttgt
     Golden snub-nosed monkey  acatgaaattctttgggattactgattcaaacct-agagttgtctggaaactgtgggttctcttctttgt
      Black snub-nosed monkey  acatgaaattctttgggattactgattcaaacct-agagttgtctggaaactgtgggttctcttctttgt
                     Marmoset  acatggatttctttgggattatttattcaagcct-agagttgtctggaaaatttgggttcttttctttgt
              Squirrel monkey  acatggatttctttgggattatttattcaagcct-agagttgtctggaaaatttgggttcttttctttgt
          White-faced sapajou  acatggatttctttgggattgtttattcaagcct-agagttgtctggaaaatttgggttcttttctttgt
            Ma's night monkey  acgtggatttctttgggattatttattcaagcct-agagttgtctggaaaatttgggttcttttctttgt
                      Tarsier  atatg-atttcattggaattattaattcaaacag-agaattatctgggaaatgtgagtta----atttgt
                  Mouse lemur  acatggatttctttggaattactgattcaaactt-aaagttgtctggaaactgtgggttc----atttat
            Coquerel's sifaka  acatggatttctctggaattattgattcaaactt-agagttgtccagaaactgcgggttc----atttgt
                  Black lemur  acatggatttctttagaattattgattcacactt-agagttgtctggaaattgtgggttc----atttgt
              Sclater's lemur  acatggatttctttagaattattgattcacactt-agagttgtctggaaattgtgggttc----atttgt
                     Bushbaby  gtatggatttcttcagaactattggttcaaacttaagagttgcctggaaaatgtgtgttc----atttgt
                        Mouse  atctggatttcat---gcttgttggcatgtg-tt-agagttgtctgggcgacgtgggctc----ctttgc
                          Dog  acacggattccttgggaattgttgactcaaactt-cgagtcgtctggaaaatgtg-gttc----atttgt
                    Armadillo  atgtggatttctttggaatcattgattcaaactt-agagttgcctggaaaatgtg-gttc----gtttgc

                        Human  gattgtctgtagtatgctttgaaggtgctctgcagtggt----agacacactggttctggcctcatttaa
                        Chimp  gattgtctgtagtatgctttgaaggtgctctgcagtggt----agacacactggttctggcctcgtttaa
                       Bonobo  gattgtctgtagtatgctttgaaggtgctctgcagtggt----agacacactggttctggcctcgtttaa
                      Gorilla  gattgtctgtagtatgctttgaaggtgctctgcagtggt----agacacactggttctggcctcatttaa
                    Orangutan  gattgtctgtagtatgctttgaaggcactctgcagtggt----agacacactggttctggcctcatttaa
                       Gibbon  gat----tgtagtatgctttgaaggcgctctgcagtggt----agacacactggttctagcctcatttaa
                       Rhesus  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
          Crab-eating macaque  gattgtctgtagcatgctttgaaggtgctctgcagtagt----aggcacactggttctggcttcatttaa
           Pig-tailed macaque  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
               Sooty mangabey  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
                       Baboon  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
                 Green monkey  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
                        Drill  gattgtctgtagcatgctttgaaggtgctctgcagtggt----aggcacactggttctggcttcatttaa
             Proboscis monkey  gattgtctgtagcgtgctttgaaggtgctctgcactggt----aggcacgctggttctggcttcattt--
              Angolan colobus  gattgtctgtagtgtgctttgaaggtgttctgcagtggt----aggcacactggttctggcttcatttaa
     Golden snub-nosed monkey  gattgtctgtagcgtgctttgaaggtgctctgcagtggt----aggcacgctggttctggcttcatttaa
      Black snub-nosed monkey  gattgtctgtagcgtgctttgaaggtgctctgcagtggt----aggcacgctggttctggcttcatttaa
                     Marmoset  agatgtctgtagcatgctttgaaggctctctgcagtggt----agacacactggttctgccatcatttaa
              Squirrel monkey  ggatgtctgtagcatgttttgaaggcgctctgcagtggt----agacacactggttttgctgtcatttaa
          White-faced sapajou  ggatgtttgtagcatgctttgaaggctctctgcagtggt----agacacactggttctgccgtcatttaa
            Ma's night monkey  ggatgtctgtagcatgctttgaaggctctctgcggtggt----agacacactggttctgctgtcatttaa
                      Tarsier  tgatgtctgtaacatgctttgaagctg-tctgcagtggt----gtacacactggttctggc--catttag
                  Mouse lemur  tcatgtctgtgccatgctttgaaggctttctgcagtggt--------atgctggttctggccttatttac
            Coquerel's sifaka  tcatgtctgtaccatgctttgaaggctttctgcagtggt--------atgctggttctggcctcatttat
                  Black lemur  tcatgtctgtaccatgctttgaaggctttctgcagtggt--------atgctggttctggcctcatttac
              Sclater's lemur  tcatgtctgtaccatgctttgaaggctttctgcagtggt--------atgctggttctggcctcatttac
                     Bushbaby  tgatgtctatagcatgatgtgagggtgttctgcagtgga--------atactggttctgggctcacttac
                        Mouse  tgacagctccagcatgct---------ctctgtagtggtgtatacatacgctggt---------------
                          Dog  tgatgtctgtagcgtgctttga-tgctctctgcagtgta-------cacgctggttctggcctca-tgac
                    Armadillo  tgaggtctgtagcatgctttgaagacactctgcactgtt----ccatgcactgcttctggcctcact---

                        Human  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                        Chimp  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                       Bonobo  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                      Gorilla  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                    Orangutan  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                       Gibbon  tgaaattaataacacat----------------------------gcccctatttctcttt---------
                       Rhesus  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
          Crab-eating macaque  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
           Pig-tailed macaque  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
               Sooty mangabey  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
                       Baboon  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
                 Green monkey  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
                        Drill  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
             Proboscis monkey  ---aattaataacacat----------------------------gcctctgtttctcttt---------
              Angolan colobus  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
     Golden snub-nosed monkey  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
      Black snub-nosed monkey  ttaaattaataacacat----------------------------gcctctgtttctcttt---------
                     Marmoset  tgaaattaataacatat----------------------------gcccctgtttatcttt---------
              Squirrel monkey  tgaaattaataacatat--------------------------gcgcccctgtttatcttt---------
          White-faced sapajou  tgaaattaataacatat----------------------------gcccctgtttatcttt---------
            Ma's night monkey  tgaaattaataatatat----------------------------acccctgtttatcttt---------
                      Tarsier  tgaaattaataacacgtgnnnnnnnnnnnnnnnnnnnnaacacgtggccctatttctcttt---------
                  Mouse lemur  agaaattaatgacacat----------------------------ggccctacttctcttt---------
            Coquerel's sifaka  agaaattaatgacacat----------------------------ggccctatttctc--t---------
                  Black lemur  agaaattaatgacacat----------------------------ggccctgttcctcttg---------
              Sclater's lemur  agaaattaatgacacat----------------------------ggccctgttcctcttg---------
                     Bushbaby  tgaaatgaataacacat----------------------------gggtctatttctcctt---------
                        Mouse  -------------atgt----------------------------gcccc--------------------
                          Dog  tgaaattaataacacat----------------------------ggccctgtttctcttt---------
                    Armadillo  -gaaattaataacacat----------------------------ggccctattccacttttttttcctt

                        Human  ----------tggatgatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                        Chimp  ----------tggatgatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                       Bonobo  ----------tggatgatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                      Gorilla  ----------tggatgatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                    Orangutan  ----------tggataatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                       Gibbon  ----------tggataatgt---------------gtgggtggg----tgggtact-gaggtttcctggc
                       Rhesus  ----------tggataatgt---------------gtgggtggg----tgaatact-gaggtttcctggc
          Crab-eating macaque  ----------tggataatgt---------------gtgggtggg----tgaatact-gaggtttcctggc
           Pig-tailed macaque  ----------tggataatgt---------------gtgggtggg----tgaatact-gaggtttcctggc
               Sooty mangabey  ----------tggataatgt---------------gtgggtggg----tgagtact-gaggtttcctggc
                       Baboon  ----------tggataatgt---------------gtgggtggg----tgagtact-gaggtttcctggc
                 Green monkey  ----------tgg---atgt---------------gtgggtggg----tgagtact-gaggtttcctggc
                        Drill  ----------tggataatgt---------------gtgggtggg----tgagtact-gaggtttcctggc
             Proboscis monkey  ----------tggataatat---------------gtgggtggg----tgagtact-gaggtttcctggc
              Angolan colobus  ----------tggataatgt---------------gtgggtggg----tgagtact-gaggtttcctggc
     Golden snub-nosed monkey  ----------tggataatat---------------gtgggtggg----tgagtact-gaggtttcctggc
      Black snub-nosed monkey  ----------tggataatat---------------gtgggtggg----tgagtact-gaggtttcctggc
                     Marmoset  ----------tggatgatgtggtgtgggtgggtgggtgggtggg----tgggtatt-gaagtttcctggc
              Squirrel monkey  ----------tggatgatgtggt------------gtggctggg----ggggtact-gaggtttcctggc
          White-faced sapajou  ----------tggatgatgtggt--------gtggttgggtggg----ttggtact-gaggtttcctggc
            Ma's night monkey  ----------tggatgatgtggt--------gtggaggggtggg----tgggtact-taggtttcctggc
                      Tarsier  ----------ttggtaatgg---------ttgtgggtgggtggg----tgggtactggaggttttctgga
                  Mouse lemur  ----------tggataata----------------gagtgtggg----tgggtact-gagatttcccgga
            Coquerel's sifaka  ----------tggataata----------------gagtgtggg----tgggtcct-gaggtttcctgga
                  Black lemur  ----------tggataatg----------------gagtgtggg----tgggtact-gaggtttcctgga
              Sclater's lemur  ----------tggataatg----------------gagtgtggg----tgggtact-gaggtttcctgga
                     Bushbaby  ----------tggataatg----------------gagtgtgggtggatgggtgct-gaggtttcctgga
                        Mouse  -----------------------------------tgaaatagg----tg-----t-g-------ctggc
                          Dog  ----------tggatgacggggt------------ggaggtggg----tggggcct-gaggtttcctgga
                    Armadillo  attccacttctggataacg----------------gggtgtggg----tgggtact-gaggtttcctgga

                        Human  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttacccaga
                        Chimp  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttacccaga
                       Bonobo  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttacccaga
                      Gorilla  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttacccaga
                    Orangutan  cagctgtaaggcagattttgacgttcttgtgccagaaacagaaatta-gagt--agtccagttatccaga
                       Gibbon  cagctataaggcagattttgacattcttgtgccagaaacagaaatta-gagtagagtccagttacccaga
                       Rhesus  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
          Crab-eating macaque  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
           Pig-tailed macaque  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
               Sooty mangabey  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
                       Baboon  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttatccaga
                 Green monkey  caactgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
                        Drill  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
             Proboscis monkey  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
              Angolan colobus  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
     Golden snub-nosed monkey  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccggttatccaga
      Black snub-nosed monkey  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtctggttatccaga
                     Marmoset  cagctataaggcagattttgacattcttgtgccagacacagaaatta-gagt--agtccagttatccaga
              Squirrel monkey  cagctataaggcagattttgacatacttgtgccagaaacagaaattg-gatt--agtccatttatccaga
          White-faced sapajou  cagctataaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttatccaga
            Ma's night monkey  cagctgtaaggcagattttgacattcttgtgccagaaacagaaatta-gagt--agtccagttatccagt
                      Tarsier  cagctgtaaggtaga-tttgacattcttgtgccagaaacagtaatta-gagt--ggtccagttaatcaga
                  Mouse lemur  tagctgtaaggcaggttttcacattcttgcatcagaaactagaatta-gagt--gggccagttattcaga
            Coquerel's sifaka  tagttgtaaggcaggttttgacattcttgcatcagaaactggaatta-gagt--gggccagttatccaga
                  Black lemur  tagctgtaaggcaggttttgacattcttgcatcagaaactagaatta-gagt--ggaccagttatccaga
              Sclater's lemur  tagctgtaaggcaggttttgacattcttgcatcagaaactagaatta-gagt--ggaccagttatccaga
                     Bushbaby  cagctgtaaggcagattttgacattcttatgccagaaactggaatta-gagc--accctagttatccaga
                        Mouse  caggtctgcagcag-----------------------acgggaatga-cagc--ggtacagtta-ccaca
                          Dog  cagctgtgaggcacattttggcattgttgtgccagaaacaggtctcaccggt--ggcccagttatccaga
                    Armadillo  cagctgtaagacagattttcatatttttgtgccagaaataggaattg-cagt--tgcctgtttattcaga

                        Human  gagctcacttaa
                        Chimp  gagctcacttaa
                       Bonobo  gagctcacttaa
                      Gorilla  gagctcacttaa
                    Orangutan  gagctcacttaa
                       Gibbon  gagctcactgaa
                       Rhesus  gaggtcacttaa
          Crab-eating macaque  gaggtcacttaa
           Pig-tailed macaque  gaggtcacttaa
               Sooty mangabey  gaggtcacttaa
                       Baboon  gaggtcacttaa
                 Green monkey  gaggtcacttaa
                        Drill  gaggtcacttaa
             Proboscis monkey  gaggtcacttaa
              Angolan colobus  gaggtcacttaa
     Golden snub-nosed monkey  gaggtcacttaa
      Black snub-nosed monkey  gaggtcacttaa
                     Marmoset  gacctcacttaa
              Squirrel monkey  aacctcacttaa
          White-faced sapajou  aacctcacttaa
            Ma's night monkey  gacctcacttaa
                      Tarsier  gagctcactcaa
                  Mouse lemur  gagctcactaaa
            Coquerel's sifaka  gagctcactaaa
                  Black lemur  gagctcactaaa
              Sclater's lemur  gagctcactaaa
                     Bushbaby  gcgcctactcag
                        Mouse  cagctctctcag
                          Dog  gaactcactcag
                    Armadillo  aagctcattcaa

Inserts between block 18 and 19 in window
B D                  Tarsier 608bp

Alignment block 19 of 323 in window, 57797281 - 57797281, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                    Bonobo  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
           Pig-tailed macaque  c
               Sooty mangabey  c
                       Baboon  c
B D              Green monkey  c
                        Drill  c
B D          Proboscis monkey  c
              Angolan colobus  c
B D  Golden snub-nosed monkey  c
      Black snub-nosed monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
          White-faced sapajou  c
            Ma's night monkey  c
B D                   Tarsier  c
                  Mouse lemur  c
            Coquerel's sifaka  c
                  Black lemur  c
              Sclater's lemur  c
B D                  Bushbaby  c
B D                     Mouse  c
B D                       Dog  c
B D                 Armadillo  c

Inserts between block 19 and 20 in window
B D                    Mouse 856bp

Alignment block 20 of 323 in window, 57797282 - 57797330, 49 bps 
B D                     Human  attgcctctttacttccccagtactgaaacatttcttcaagtataacat
B D                     Chimp  attgcctctttacttccccagtactgaaacatttcttccagtataacat
B D                    Bonobo  attgcctctttacttccccagtactgaaacatttcttccagtataacat
B D                   Gorilla  attgcctctttacttccccagtactgaaacatttcttccagtataacat
B D                 Orangutan  attgcctctttacttccccagtactgaaacatttcttccagtataacat
B D                    Gibbon  attgcctctttacttccccaggactgaaacatttcttccagtataacat
B D                    Rhesus  attgcctctttacttccccagtactgaaacatttcttccaatataacat
B D       Crab-eating macaque  attgcctctttacttccccagtactgaaacatttcttccaatataacat
           Pig-tailed macaque  attgcctctttacttccccagtactgaaacatttcttccaatataacat
               Sooty mangabey  attgcctctttacttccccagtactgaaacatttcttccaatataacat
                       Baboon  attgcctctttacttccccagtactgaaacatttcttccaatataacat
B D              Green monkey  attgcctctttacttccccagtactgaaacatttcttccaatataacat
                        Drill  attgcctctttacttccccagtactgaaacatttcttccaatataacat
B D          Proboscis monkey  attgcctctttatttccccagtactgaaacatttcttccaacataacat
              Angolan colobus  attgcctctttatttccccagtactgaaacatttcttccaacataacat
B D  Golden snub-nosed monkey  attgcctctttatttccccagtactgaaacatttcttccaacataacat
      Black snub-nosed monkey  attgcctctttatttccccagtactgaaacatttcttccaacataacat
B D                  Marmoset  attgcctttttacttccccagtactgaaacatttcttccaatata--at
B D           Squirrel monkey  attgcctttttacttccccagtactgaaacgtttcttccaatgtaacat
          White-faced sapajou  attgcctttttacttccccagtactgaaacatttcttccagtataacat
            Ma's night monkey  attgcctttttacttccccagtactgaaacatttcttccaatataacgt
B D                   Tarsier  atcacctcttaacttacctagtagtgaaa-attgttcccaagattacgc
                  Mouse lemur  attg---ctttacttccctagtactgaaacttttctctcaacataacat
            Coquerel's sifaka  attg---ctttactttcccagtactgaaacatttctcccaacataacat
                  Black lemur  attg---ctttacttccccagtactgaaacatttc-ctcaacataacat
              Sclater's lemur  attg---ctttacttccccagtactgaaacatttc-ctcaacataacat
B D                  Bushbaby  attgcttctttcctttcccagtatgaaaacatttctcccagcataacat
B D                     Mouse  attgcctctttattttctcagcacggaaacgttcttcccatgataact-
B D                       Dog  agggcctcttaactaccccagtacagagacgtttctcccaatgtaac--
B D                 Armadillo  attgcctctttacttccccagtactgaaacatttctcccaacat-----

Inserts between block 20 and 21 in window
                 Black lemur 305bp
             Sclater's lemur 305bp

Alignment block 21 of 323 in window, 57797331 - 57797338, 8 bps 
B D                     Human  aaaattac
B D                     Chimp  aaaattac
B D                    Bonobo  aaaattac
B D                   Gorilla  aaaattac
B D                 Orangutan  aaaattac
B D                    Gibbon  aaaattac
B D                    Rhesus  gaaattac
B D       Crab-eating macaque  gaaattac
           Pig-tailed macaque  gaaattac
               Sooty mangabey  aaaattac
                       Baboon  aaaattac
B D              Green monkey  aaaattac
                        Drill  aaaattac
B D          Proboscis monkey  gaaattac
              Angolan colobus  aaaattac
B D  Golden snub-nosed monkey  aaaattac
      Black snub-nosed monkey  aaaattac
B D                  Marmoset  aaaattac
B D           Squirrel monkey  aaaattac
          White-faced sapajou  aaaattac
            Ma's night monkey  aaaattac
B D                   Tarsier  acaatggc
                  Mouse lemur  aaaattac
            Coquerel's sifaka  aaaattac
                  Black lemur  aaaattac
              Sclater's lemur  aaaattac
B D                  Bushbaby  aaaattac
B D                     Mouse  acagccac
B D                       Dog  -aaaatac
B D                 Armadillo  --aattac

Inserts between block 21 and 22 in window
                 Mouse lemur 326bp
B D                 Bushbaby 332bp

Alignment block 22 of 323 in window, 57797339 - 57797340, 2 bps 
B D                     Human  cg
B D                     Chimp  ca
B D                    Bonobo  ca
B D                   Gorilla  ca
B D                 Orangutan  ca
B D                    Gibbon  ca
B D                    Rhesus  ca
B D       Crab-eating macaque  ca
           Pig-tailed macaque  ca
               Sooty mangabey  ca
                       Baboon  ca
B D              Green monkey  ca
                        Drill  ca
B D          Proboscis monkey  ca
              Angolan colobus  ca
B D  Golden snub-nosed monkey  ca
      Black snub-nosed monkey  ca
B D                  Marmoset  ca
B D           Squirrel monkey  tg
          White-faced sapajou  ca
            Ma's night monkey  ca
B D                   Tarsier  ca
            Coquerel's sifaka  cg
                  Black lemur  ca
              Sclater's lemur  ca
B D                  Bushbaby  ca
B D                     Mouse  ca
B D                       Dog  cg
B D                 Armadillo  ta
                 Mouse lemur  ==

Inserts between block 22 and 23 in window
           Coquerel's sifaka 302bp
B D                      Dog 1bp

Alignment block 23 of 323 in window, 57797341 - 57797356, 16 bps 
B D                     Human  taacaagcagacccag
B D                     Chimp  taacaagcagacccag
B D                    Bonobo  taacaagcagacccag
B D                   Gorilla  taacaagcagacccag
B D                 Orangutan  taacaagcagacccag
B D                    Gibbon  taacaagcagacccaa
B D                    Rhesus  taacaagcaaacccag
B D       Crab-eating macaque  taacaagcaaacccag
           Pig-tailed macaque  taacaagcaaacccag
               Sooty mangabey  taacaagcaaacccag
                       Baboon  aaacaagcaaacccag
B D              Green monkey  taacaagcaaacccag
                        Drill  taacaagcaaacccag
B D          Proboscis monkey  taacaagcaaacccag
              Angolan colobus  taacaagcaaacccag
B D  Golden snub-nosed monkey  taacaagcaaacccag
      Black snub-nosed monkey  taacaagcaaacccag
B D                  Marmoset  taacaagcaaacccta
B D           Squirrel monkey  taacgagcaaacccta
          White-faced sapajou  taatgaacaaacccta
            Ma's night monkey  taacgagcaaacccta
B D                   Tarsier  taacaggcaaactcca
            Coquerel's sifaka  taacaagcaaacccca
                  Black lemur  taacaagcaaacccca
              Sclater's lemur  taacaagcaaacccca
B D                  Bushbaby  taacaagcaaacccca
B D                     Mouse  taa-------------
B D                       Dog  taacaggcaaaccccg
B D                 Armadillo  tgacagacaaactcca
                 Mouse lemur  ================

Alignment block 24 of 323 in window, 57797357 - 57797452, 96 bps 
B D                     Human  aatactgaaaataact-ccatttgttcattataggtatctttatttg----aaaagtgaaaaatgctttg
B D                     Chimp  aatactgaaaataact-ccatttgttcattataggtatctttatttg----aaaagttaaaaatgctttg
B D                    Bonobo  aatactgaaaataact-ccatttgttcattataggtatctttatttg----aaaagttaaaaatgctttg
B D                   Gorilla  aatactgaaaataact-ccatttgttcattataggtatctttatttg----aaaagttaaaaatgctttg
B D                 Orangutan  aatactgaaaataact-ccatttgttcattataggtatctttatttg----aaaagttaaaaatgctttg
B D                    Gibbon  aatactgaaaataact-ccatttgttcattacagatatctttatttg----aaaagttaaaaatgctttg
B D                    Rhesus  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
B D       Crab-eating macaque  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
           Pig-tailed macaque  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
               Sooty mangabey  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
                       Baboon  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
B D              Green monkey  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
                        Drill  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
B D          Proboscis monkey  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
              Angolan colobus  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttcaaaatgctttg
B D  Golden snub-nosed monkey  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
      Black snub-nosed monkey  aatactgaaaataacc-gcatttgttcattagaggtatctttatttg----aaaagttaaaaatgctttg
B D                  Marmoset  aatactgaaaataact-tcatttgttcattataggtatcttcatttg----aaaagttaaaaatgctttg
B D           Squirrel monkey  aatactgaaaataact-tcatttgttcattataggtatcttcatttg----gaaagttaaaaatgctttg
          White-faced sapajou  aatactgaaaataact-tcatttgttcattataggtatcttcatttg----aaaagctaaaaatacattg
            Ma's night monkey  aatactgaaaatgact-tcatttgttcattataggtatcttcatttg----aaaagttaaaaatgctttg
B D                   Tarsier  aatactgaaaagagct-ccatttgctcattacaggcgtctttatttgaaaaaaaagttaaaaatgctctg
                  Mouse lemur  aatactgaaaagaact-ccatttgctcataacaggta-ctttatttg----aaaagttaaaaatgttctg
            Coquerel's sifaka  aatactgaaaagaact-ccatttgctcattacaggtacctttatttg----aaaagttaaaaatgctctg
                  Black lemur  aatactgaaaagaact-ccatttgctcattacac----ctttatttg----aaaagttaaaaatgctctg
              Sclater's lemur  aatactgaaaagaact-ccatttgctcattacac----ctttatttg----aaaagttaaaaatgctctg
B D                  Bushbaby  aatactgaaaagaact-ccatttgttcattataggtacctttatttg----aaaagttaaaaatgctatg
B D                     Mouse  ------gaacatagtc-acat------------ggcctctttatttg----taaagttgaacatgctgtg
B D                       Dog  gatactgaagagaactcccgtttgctcat-acagatatctttatttg----aaaagtaaaaaaatctctg
B D                 Armadillo  tatactgaaaagaact-ccatttgctcat-acagatacctttatttg----aaaagttagaaatgctctg

                        Human  acacattacagatctgggtatttggattttg
                        Chimp  acacattacagatctgggcatttggattttg
                       Bonobo  acacattacagatctgggcatttggattttg
                      Gorilla  acacattacagatctgggcatttggattttg
                    Orangutan  acacattacagatctgggcatttggattttg
                       Gibbon  acacattacagatctgggcatttggattttg
                       Rhesus  a------------------------------
          Crab-eating macaque  a------------------------------
           Pig-tailed macaque  a------------------------------
               Sooty mangabey  a------------------------------
                       Baboon  a------------------------------
                 Green monkey  a------------------------------
                        Drill  a------------------------------
             Proboscis monkey  a------------------------------
              Angolan colobus  a------------------------------
     Golden snub-nosed monkey  a------------------------------
      Black snub-nosed monkey  a------------------------------
                     Marmoset  acacataatagatctggccatttggatttca
              Squirrel monkey  acacataacagatctggccatttggatttcg
          White-faced sapajou  acacataacagatctggccatttggatttca
            Ma's night monkey  acacataacagatctggccatttggatttca
                      Tarsier  gcacataacagatctgggcctttgcatttca
                  Mouse lemur  acacataacagatctgggcatttggattttg
            Coquerel's sifaka  gcacgtaacagatctcagcatttggattttg
                  Black lemur  gcacataacagatctgggcatttggattttg
              Sclater's lemur  gcacataacagatctgggcatttggattttg
                     Bushbaby  gcacataacagatgtgggcatttggattttg
                        Mouse  gcacatggtagacctgggcgtttggagcctg
                          Dog  gcaagt-acagctctcggcattttgattttg
                    Armadillo  gcacat-gtagaactgggcatttgaattttg

Inserts between block 24 and 25 in window
                 Mouse lemur 36bp

Alignment block 25 of 323 in window, 57797453 - 57797490, 38 bps 
B D                     Human  cctatggagtgcat-atatga-----ttt-caatgatttacaggc
B D                     Chimp  cctatggagtgtat-atatga-----ttt-caatgatttacaggt
B D                    Bonobo  cctatggagtgtat-atatga-----ttt-caatgatttacaggt
B D                   Gorilla  cctatggagtgtat-atatga-----ttt-caatgatttacaggt
B D                 Orangutan  cctatggagtatat-atatga-----ttc-caatgatttacaggt
B D                    Gibbon  cctatggagtgtat-atatga-----ttt-caatgatttacaggt
B D                    Rhesus  -------------------------------aatgatttacaggt
B D       Crab-eating macaque  -------------------------------aatgatttacaggt
           Pig-tailed macaque  -------------------------------aatgatttacaggt
               Sooty mangabey  -------------------------------aatgatttacaggt
                       Baboon  -------------------------------aatgatttacaggt
B D              Green monkey  -------------------------------aatgatttacaggt
                        Drill  -------------------------------aatgatttacaggt
B D          Proboscis monkey  -------------------------------aatgatttacaggt
              Angolan colobus  -------------------------------aatgatttacaggt
B D  Golden snub-nosed monkey  -------------------------------aatgatttacaggt
      Black snub-nosed monkey  -------------------------------aatgatttacaggt
B D                  Marmoset  accttggagtgtat-atatga-----tttccaatgatttgcaggt
B D           Squirrel monkey  accttggagtctat-atatga-----ttt-caatgatttgcaggt
          White-faced sapajou  accttggagtgtat-atatga-----ttt-caatgatttgcaggt
            Ma's night monkey  accttggagtgtat-atatga-----ttt-caatgatttgcaggt
B D                   Tarsier  accttgggctgtatcatgtga-----ttt-caatgatttgcaggt
            Coquerel's sifaka  accctggggtatat-gtgtga-----ttc--agtgatttacagt-
                  Black lemur  acactggggtatat-gtgtga-----ttc--aatgatttgcagt-
              Sclater's lemur  acactggggtatat-gtgtga-----ttc--aatgatttgcagt-
B D                  Bushbaby  accttggggtatgt-atgtgat----ttc--agtgatttgcagt-
B D                     Mouse  -gcctgcagggagt-gtgtggtca-ctct--agtgctttggggat
B D                       Dog  cccctggggtatat-atggaaatagcttc--agtgattggtgggt
B D                 Armadillo  accttggggtatat-atgtgaataccttc--aaagacttgtgggt
                 Mouse lemur  =============================================

Alignment block 26 of 323 in window, 57797491 - 57797505, 15 bps 
B D                     Human  taaatagattttaga
B D                     Chimp  taaatagattttaga
B D                    Bonobo  taaatagattttaga
B D                   Gorilla  taaatagattttaga
B D                 Orangutan  taaatagattttaga
B D                    Gibbon  taaatagattttaga
B D                    Rhesus  taaatagattttaga
B D       Crab-eating macaque  taaatagattttaga
           Pig-tailed macaque  taaatagattttaga
               Sooty mangabey  taaatagattttaga
                       Baboon  taaatagattttaga
B D              Green monkey  taaatagattttaga
                        Drill  taaatagattttaga
B D          Proboscis monkey  taaataaattttaga
              Angolan colobus  taaatagattttaga
B D  Golden snub-nosed monkey  taaatagattttaga
      Black snub-nosed monkey  taaatagattttaga
B D                  Marmoset  taaatagattttaga
B D           Squirrel monkey  taaatagattttaga
          White-faced sapajou  taaatagattttaaa
            Ma's night monkey  taaatagattttaga
B D                   Tarsier  taagtagg-tttaga
                  Mouse lemur  taaatagattttaga
            Coquerel's sifaka  taaatggattttaga
                  Black lemur  taaatagattttaga
              Sclater's lemur  taaatagattttaga
B D                  Bushbaby  taaataggttttaga
B D                     Mouse  ---------tgcagg
B D                       Dog  caaatagattctgga
B D                 Armadillo  taaataggtttgga-

Inserts between block 26 and 27 in window
         White-faced sapajou 315bp
B D                    Mouse 1bp

Alignment block 27 of 323 in window, 57797506 - 57797556, 51 bps 
B D                     Human  aataatcatcttaaaattga--------------------------------------aaacaaaggtag
B D                     Chimp  aataatcatcttaaaattga--------------------------------------aaacaaaggtag
B D                    Bonobo  aataatcatcttaaaattga--------------------------------------aaacaaaggtag
B D                   Gorilla  aataatcatcttaaaattga--------------------------------------aaacaaaggtag
B D                 Orangutan  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
B D                    Gibbon  aataatgatcttcaaattga--------------------------------------aaacaaaggtag
B D                    Rhesus  aataatgatcttaaaattgg--------------------------------------aaacaaaggtag
B D       Crab-eating macaque  aataatgatcttaaaattgg--------------------------------------aaacaaaggtag
           Pig-tailed macaque  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
               Sooty mangabey  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
                       Baboon  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
B D              Green monkey  aataatgatcttaaaattga--------------------------------------aaacaaagttag
                        Drill  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
B D          Proboscis monkey  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
              Angolan colobus  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
B D  Golden snub-nosed monkey  aataatgatcttaaaattga--------------------------------------aaacaaagatag
      Black snub-nosed monkey  aataatgatcttaaaattga--------------------------------------aaacaaaggtag
B D                  Marmoset  aataatgatcttaaaattta--------------------------------------aaaccaaggtag
B D           Squirrel monkey  aataatgatcttaaaattta--------------------------------------aaactaaggtag
          White-faced sapajou  aataatgatcttaaaattta--------------------------------------aaaccaaggtag
            Ma's night monkey  aataatgatcttaaaattta--------------------------------------aaaccaaggtag
B D                   Tarsier  cgtactgataatgaaattta--------------------------------------aaacaattgtag
                  Mouse lemur  attattgatctgaaaattta--------------------------------------aaacaaatgtag
            Coquerel's sifaka  actactgatctaaaaatttc--------------------------------------caacaaatggag
                  Black lemur  attactgatcttaaaattta--------------------------------------aaacaaatgtag
              Sclater's lemur  attactgatcttaaaattta--------------------------------------aaacaaatgtag
B D                  Bushbaby  agtactagtcttaaaatcta--------------------------------------aaacaaatgtag
B D                     Mouse  -----------tgtagttgg--------------------------------------aagcagatgtgg
B D                       Dog  tatagtgatcttactatttatttatttatttattcatgagagatagagagagaggcagagacacaggcag
B D                 Armadillo  aatattgatgttaaaatgta--------------------------------------aaacagtcttag

                        Human  ----------------------------------------------------------------gtcctg
                        Chimp  ----------------------------------------------------------------gtcctg
                       Bonobo  ----------------------------------------------------------------gtcctg
                      Gorilla  ----------------------------------------------------------------gtcctg
                    Orangutan  ----------------------------------------------------------------gtcctg
                       Gibbon  ----------------------------------------------------------------gtcccg
                       Rhesus  ----------------------------------------------------------------gtcctg
          Crab-eating macaque  ----------------------------------------------------------------gtcctg
           Pig-tailed macaque  ----------------------------------------------------------------gtcctg
               Sooty mangabey  ----------------------------------------------------------------gtcctg
                       Baboon  ----------------------------------------------------------------gtcctg
                 Green monkey  ----------------------------------------------------------------gtcctg
                        Drill  ----------------------------------------------------------------gtcctg
             Proboscis monkey  ----------------------------------------------------------------gtcctg
              Angolan colobus  ----------------------------------------------------------------gtcctg
     Golden snub-nosed monkey  ----------------------------------------------------------------gtcctg
      Black snub-nosed monkey  ----------------------------------------------------------------gtcctg
                     Marmoset  ----------------------------------------------------------------gtcctg
              Squirrel monkey  ----------------------------------------------------------------gtcctg
          White-faced sapajou  ----------------------------------------------------------------gtcctg
            Ma's night monkey  ----------------------------------------------------------------gtcctg
                      Tarsier  ----------------------------------------------------------------gtcctg
                  Mouse lemur  ----------------------------------------------------------------gtcctg
            Coquerel's sifaka  ----------------------------------------------------------------gtcctg
                  Black lemur  ----------------------------------------------------------------gtcttg
              Sclater's lemur  ----------------------------------------------------------------gtcttg
                     Bushbaby  ----------------------------------------------------------------gtcgtg
                        Mouse  ----------------------------------------------------------------gtcctg
                          Dog  agggagaagcaggctccacgcagggagccggacgtgggactccatcccaggtctccaggatcatgccctg
                    Armadillo  ----------------------------------------------------------------gtcctg

                        Human  g------------------------------------------------tataatattaaa
                        Chimp  g------------------------------------------------tataatattaaa
                       Bonobo  g------------------------------------------------tataatattaaa
                      Gorilla  g------------------------------------------------tataatattaaa
                    Orangutan  g------------------------------------------------t---atattaaa
                       Gibbon  g------------------------------------------------tataatattaaa
                       Rhesus  g------------------------------------------------tataatgctaaa
          Crab-eating macaque  g------------------------------------------------tataatgctaaa
           Pig-tailed macaque  g------------------------------------------------tataatgctaaa
               Sooty mangabey  g------------------------------------------------cataatgctaaa
                       Baboon  g------------------------------------------------tataatgctaaa
                 Green monkey  g------------------------------------------------tataatgctaaa
                        Drill  g------------------------------------------------cataatgctaaa
             Proboscis monkey  g------------------------------------------------tataatactaaa
              Angolan colobus  g------------------------------------------------tataatactaaa
     Golden snub-nosed monkey  g------------------------------------------------tataatactaaa
      Black snub-nosed monkey  g------------------------------------------------tataatactaaa
                     Marmoset  g------------------------------------------------aataatattaaa
              Squirrel monkey  g------------------------------------------------tataatattaaa
          White-faced sapajou  g------------------------------------------------tataatattaaa
            Ma's night monkey  g------------------------------------------------tataatattaaa
                      Tarsier  g------------------------------------------------cacaatattaaa
                  Mouse lemur  g------------------------------------------------cacagtattaaa
            Coquerel's sifaka  g------------------------------------------------cacaatattaaa
                  Black lemur  g------------------------------------------------cacag-------
              Sclater's lemur  g------------------------------------------------cacag-------
                     Bushbaby  g------------------------------------------------cacaatattaaa
                        Mouse  a------------------------------------------------tgca--------
                          Dog  ggctgaaagtggcgctaaaccgctgagccacccgggctgctcatgatcttacaatttaaaa
                    Armadillo  g------------------------------------------------cacca-------

Inserts between block 27 and 28 in window
                 Mouse lemur 38bp

Alignment block 28 of 323 in window, 57797557 - 57797621, 65 bps 
B D                     Human  cat-----aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                     Chimp  cat-----aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                    Bonobo  cat-----aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                   Gorilla  cat-----aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                 Orangutan  cat-----aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                    Gibbon  c-------aaa----------------gttattaaacattttaagcattgttttttggttctctttcttt
B D                    Rhesus  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
B D       Crab-eating macaque  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
           Pig-tailed macaque  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
               Sooty mangabey  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
                       Baboon  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
B D              Green monkey  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
                        Drill  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
B D          Proboscis monkey  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
              Angolan colobus  c-------aaa----------------gctattaaacattttgagcattgttttttggttctctttcttt
B D  Golden snub-nosed monkey  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
      Black snub-nosed monkey  c-------aaa----------------gttattaaacattttgagcattgttttttggttctctttcttt
B D                  Marmoset  cat---aaaaa----------------gttattacacattttaagccttgttttttggttctctttcttc
B D           Squirrel monkey  cataaaaaaaa----------------gttattaaacattttaagtcttgttttttggttctctttcttc
          White-faced sapajou  cat--aaaaaa----------------attattaaacattttaagccttgttttttggttctc------c
            Ma's night monkey  cat-aaaaaaa----------------gttattaaacattttaagccttgttttttggttctc----ttc
B D                   Tarsier  c------------------------------------attttaaacttagtatttgg-------ttattt
            Coquerel's sifaka  ------------------------------------tgttttaagcttagttttttggttgcctttcttt
                  Black lemur  -----------------------------tattaaatattttaagcttagttttttggttgcctttcttt
              Sclater's lemur  -----------------------------tattaaatattttaagcttagttttttggttgcctttcttt
B D                  Bushbaby  -------------------------------------catttcatcttggtgttttggttgtctgtcttt
B D                     Mouse  -------------------------------ttaaa-----taagcttagtttctag---ctctttct--
B D                       Dog  -------cagactcacatccttgtcccattattaaatactttaaacttagttatt---ttctttttcctc
B D                 Armadillo  ----------------------------atattaaacattgtaagctttgttgtt---ttcttttacttt
                 Mouse lemur  ======================================================================

                        Human  tgatttctccagattt
                        Chimp  tgatttctccagattt
                       Bonobo  tgatttctccagattt
                      Gorilla  tgatttctccagattt
                    Orangutan  tgatttctccagattt
                       Gibbon  tgatttctccagattt
                       Rhesus  tgatttctccagattt
          Crab-eating macaque  tgatttctccagattt
           Pig-tailed macaque  tgatttctccagattt
               Sooty mangabey  tgatttctccagattt
                       Baboon  tgatttctccagattt
                 Green monkey  tgatttctccagattt
                        Drill  tgatttctccagattt
             Proboscis monkey  cgatttctccagattt
              Angolan colobus  cgatttgtccagattt
     Golden snub-nosed monkey  cgatttctccagattt
      Black snub-nosed monkey  cgatttctccagattt
                     Marmoset  taatttttccagattt
              Squirrel monkey  taatttttccagattt
          White-faced sapajou  taatttttccagattt
            Ma's night monkey  taatttttccagattt
                      Tarsier  tggcttctccagattt
            Coquerel's sifaka  ggacttctccagattc
                  Black lemur  ggacttctccagattc
              Sclater's lemur  ggacttctccagattc
                     Bushbaby  aaacttctccacattt
                        Mouse  ----------------
                          Dog  tgactgctctggattc
                    Armadillo  tgactt---cagatgc
                  Mouse lemur  ================

Alignment block 29 of 323 in window, 57797622 - 57798040, 419 bps 
B D                     Human  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D                     Chimp  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D                    Bonobo  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D                   Gorilla  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D                 Orangutan  atgcagttttagtgctttc-tgctgaggcttt-agctggagggc---------------------cacaa
B D                    Gibbon  atggagttttagtgctttc-tgctgagacttt-agctagagggc---------------------cataa
B D                    Rhesus  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D       Crab-eating macaque  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
           Pig-tailed macaque  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
               Sooty mangabey  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
                       Baboon  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D              Green monkey  atgcagttttagtgctttcttgctgaggcttt-agctagagggc---------------------cacaa
                        Drill  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D          Proboscis monkey  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
              Angolan colobus  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D  Golden snub-nosed monkey  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
      Black snub-nosed monkey  atgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacaa
B D                  Marmoset  ctgcagttttagtgctttc-tgctgaggcttt-agctagagagc---------------------cgcag
B D           Squirrel monkey  ctgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacag
          White-faced sapajou  ctgcagttttagtgctttc-tgctgaggcttt-agctagaaggc---------------------cacag
            Ma's night monkey  ctgcagttttagtgctttc-tgctgaggcttt-agctagagggc---------------------cacag
B D                   Tarsier  atgcagttctagtgctttc-tgctgtggcttt-agctagaaagc---------------------cacaa
                  Mouse lemur  atgcagttgtagtgctttc-tcctgaggcttt-agctagaaggc---------------------cacaa
            Coquerel's sifaka  atgcagttgtagtgctttc-tcctgaggcttt-agctagaaggc---------------------cacaa
                  Black lemur  atgcagttatagtgctttc-ccctgaggcttt-agctagaaggc---------------------tacaa
              Sclater's lemur  atgcagttatagtgctttc-ccctgaggcttt-agctagaaggc---------------------tacaa
B D                  Bushbaby  gtgcagttttagtgctttc-ttttgaggcttt-aggtagaagtc---------------------cacaa
B D                     Mouse  -----gccttcacgctctc-tgctacagcttc-ggctaaaaaac---------------------cacca
B D                       Dog  atgcaactgtagtgct-tc-tgctgagactttaagcccaaaggt---------------------cacaa
B D                 Armadillo  atgcagttttagtgctttc-tgctgagatttt----taaaatgccaggccacacacacatacatacacaa

                        Human  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                        Chimp  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                       Bonobo  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                      Gorilla  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                    Orangutan  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                       Gibbon  aacccaaaaactatat-ggttaacattttag------gtatataacaagcaaggaatgcaaggatga-g-
                       Rhesus  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
          Crab-eating macaque  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggagtgcaaggatga-g-
           Pig-tailed macaque  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
               Sooty mangabey  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
                       Baboon  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
                 Green monkey  aatccaaaaactatgt-ggttaacattttag------gtatataacaaagaaggaatgcaaggatga-g-
                        Drill  aatccaaaaaccatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
             Proboscis monkey  aacccaaaaactatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
              Angolan colobus  aaccccaaaactatgt-ggttaacattttag------gtatataacaaggaaggaatgcaaggatga-g-
     Golden snub-nosed monkey  aacccaaaaactatgt-ggttagcattttag------gtatataacaaggaaggaatgcaaggatga-g-
      Black snub-nosed monkey  aacccaaaaacta--t-ggttagcattttag------gtatataacaaggaaggaatgcaaggatga-g-
                     Marmoset  aacccaaaaagtgtgt-ggttaacattttag------gtatataacaaccaaggaatgcaaag-tga-g-
              Squirrel monkey  aacccagaaagtgtgt-ggttaacattttag------gtatataacaaccaaggaatgcaaag-tga-g-
          White-faced sapajou  aacccaaaaagtgtgt-ggttaacattttag------gtatataacaaccaagaaatgcaaag-tga-g-
            Ma's night monkey  aacccaaaaagtgtgt-ggttaacattttag------gtatataacaaccaaggaatgcaaag-tgagg-
                      Tarsier  aaaccaaaaaatgggt-ggttaacatttttgtgtactgtatataataaccaagggatgcaaggatga-ga
                  Mouse lemur  gacccaaaaagtgagt-aattaacattttag------gcatgtaacaaccaagaaatgcaaggatga-ga
            Coquerel's sifaka  aacccaaaaagtgagtgggttaacattttag------gcatataacaaccaaggaatgcaaggataa-ga
                  Black lemur  aacccaaaaagtgagt-ggttaacattttag------gcttataacaaccaaaaaatgcaaagatga-ga
              Sclater's lemur  aacccaaaaactgagt-ggttaacattttag------gcttataacaaccaaaaaatgcaaagatga-ga
                     Bushbaby  agaccaaaatgcaggt-ggttgacattttaa------gtatgtaacgaccaaggagtgcaaggatgg-ga
                        Mouse  aagccaaaaggcaagc-tgtcagcatct--a------atggacagcca-caaggaatgcaaggatga-c-
                          Dog  aaattgaaaagtaggt-agttaacatattag------gtatataacaactaaggaatgcagggatga-g-
                    Armadillo  aatgcaaaaaattggt-ggttaacattttcg------gtctgtaacaactaaggaatgcaaggataa-g-

                        Human  aaaaaatggagaacatgccgtgatttgcagactctattatatctaaattaagtagctgaatgtc------
                        Chimp  aaaaaatggagaacatgctgtgatgtgcagactctattatatctaaattaagtagctgaa----------
                       Bonobo  aaaaaatggagaacatgctgtgatgtgcagactctattatatctaaattaagtagctgaa----------
                      Gorilla  aaaaaatggagaacatgctgtgatttgcagactctattatatctaaattaagtagctgaa----------
                    Orangutan  aaaaaatggagaacatgctgtgatttgcagactctattatatcta----aagtagctgaatgtg------
                       Gibbon  -aaacatggagaacatgctgtgatttgcagactctattatatctaaattaagtagctgaatatc------
                       Rhesus  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
          Crab-eating macaque  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
           Pig-tailed macaque  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
               Sooty mangabey  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
                       Baboon  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
                 Green monkey  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
                        Drill  aaaaaatggagaaca----gtg-ttttcagactctattatatctaaattaagtagctgaatgtc------
             Proboscis monkey  aaaaaatggagaaca----gtgattttcagactctgttatatctaaattaagtagctgaatgtc------
              Angolan colobus  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
     Golden snub-nosed monkey  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
      Black snub-nosed monkey  aaaaaatggagaaca----gtgattttcagactctattatatctaaattaagtagctgaatgtc------
                     Marmoset  aaaaaatggagaacatgctgtgatttgcagactctattatatct-aattaagtagctgaatgtc------
              Squirrel monkey  aaaaaatggagaacacgctgtgatttgcagactctattatatctaaattaggtagctgaatgtc------
          White-faced sapajou  aaaaaatggagaagacgctgtgatttgcagactctattatatctcaattaagtagctgaatgtc------
            Ma's night monkey  aaaaaatggagaacatgctgtgatttgcagactctattatatctaaattaagtagctgaatgtc------
                      Tarsier  aaaaaatgaaaaacatgctgagattttcagactctattgtatctaaactaagtggctggatgtc------
                  Mouse lemur  aaaaaatggagaacatgctataatttgcaga--ttattgtatctaaattaagtagctgaatatc------
            Coquerel's sifaka  aaaaaatggagaacatgctatgatttgcaga--ttattgtatataaattaagtagctgaatatc------
                  Black lemur  aaaaaatggagagcatgctatgatttgcaga--ttattgtatctaaattacgtagcggaatatc------
              Sclater's lemur  aaaaaatggagagcatgctatgatttgcaga--ttattgtatctaaattacgtagcggaatatc------
                     Bushbaby  aaaatg-ggagaacatgccatgatttgcaga--tcac--tatctaaatgcagtagctgaatggc------
                        Mouse  ttcgaaaggcagtca----gccatcctgaga-tgggtcgtatcta----aagcagccgcgtgtc------
                          Dog  ----gatggagaacatgccgtgatttgcagacctccttgtatct-----aagtagc-aattatt------
                    Armadillo  -aaaagcagagaacatgctgtgatttgcagatattgttgtatctaaattaagtggctgaatgacagtggc

                        Human  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                        Chimp  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                       Bonobo  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                      Gorilla  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                    Orangutan  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                       Gibbon  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctcttttctgt
                       Rhesus  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctctcttctgt
          Crab-eating macaque  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctctcttctgt
           Pig-tailed macaque  --------aggcagaaattggtcgataaattatttcctgatattggcact----atctgctctcttctgt
               Sooty mangabey  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctctcttctgt
                       Baboon  --------aggcagaaattggcagataaattatttcctgatattggcact----atctgctctcttctgt
                 Green monkey  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctctcttctgt
                        Drill  --------aggcagaaattggtggataaattatttcctgatattggcact----atctgctctcttctgt
             Proboscis monkey  --------aggcagaaattggtggataaattatttcctgatactggcact----atctgctctcttctgt
              Angolan colobus  --------aggcagaaattggtggataaattatttcctgatactggcact----atctgctctcttctgt
     Golden snub-nosed monkey  --------aggcagaaattggtggataaattatttcctgatactggcact----atctgctctcttctgt
      Black snub-nosed monkey  --------aggcagaaattggtggataaattatttcctgatactggcact----atctgctctcttctgt
                     Marmoset  --------aggcagaaattggtagataaattctttgttgattctggcact----atctgctctcttctgt
              Squirrel monkey  --------aggcagaaattggtagataaattctttgttgatactggcact----gtctgctctcttctgt
          White-faced sapajou  --------aggcagaaataggtagataaattctttgttgatactggcact----atctgctctattctgt
            Ma's night monkey  --------aggcagaaattggtagataagttctttgttgatactggcact----atttgctctcttttgt
                      Tarsier  --------aggcagaaattggtaggtgaattctttcctggtattggcact----ctctggtctctcct-t
                  Mouse lemur  --------aggcagaagttggtaggtaaactcttttctgatattggcact----atctcctctcttatgt
            Coquerel's sifaka  --------aggcagaaattggtaggtgaattcttttctgatattggcact----atctgctctcttatgt
                  Black lemur  --------tggcagaagttggtaggtaaattcttttctgatattggcact----atctgctgtcttatgt
              Sclater's lemur  --------tggcagaagttggtaggtaaattcttttctgatattggcact----atctgctgtcttatgt
                     Bushbaby  --------gggcagaagttggcaggtcagttctttcttgata-cggcact----gtgtgctatctt----
                        Mouse  --------gggc-tcagttggtaggtgaactctttgctgatgttggcactgctagtttgctctctcctgt
                          Dog  --------aggca-aaattggtagataaattttttcctgttattggcacg----atcagctgtcttctgt
                    Armadillo  tgaatgctaggcagaaatcggtagggaaattctttactgatattggcact----atctgcgctcttctgc

                        Human  ggccttgcaataggtataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                        Chimp  ggccttgcaataggtataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                       Bonobo  ggccttgcaataggtataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                      Gorilla  ggccttgcaataggtataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                    Orangutan  ggccttgcaataggtataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                       Gibbon  ggccttgcaatagatataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                       Rhesus  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
          Crab-eating macaque  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
           Pig-tailed macaque  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
               Sooty mangabey  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
                       Baboon  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
                 Green monkey  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
                        Drill  ggccttgcagtagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
             Proboscis monkey  ggctttgcaatagatgtaggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
              Angolan colobus  ggccttgcaatagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
     Golden snub-nosed monkey  ggctttgcaatagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
      Black snub-nosed monkey  ggctttgcaatagatataggccttcttgctttagaaaagccccttttctttcttcatttgcagctgtttc
                     Marmoset  ggccttacagtaggcataggccttcttgctttagaaaagccccttttctttcttcaattggagctgtttc
              Squirrel monkey  ggccttacagtaggcataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
          White-faced sapajou  ggccttacagtaggcataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
            Ma's night monkey  ggccttacagtaggcataggccttcttgctttagaaaagccccttttctttcttcatttggagctgtttc
                      Tarsier  ggtcttgcaataggcatatgccttcttgccttagaaaagccccttttctttcttcagttgaagctgtttc
                  Mouse lemur  agtcttgcagtaggcatatatcttcttgccttagaaaagccccttttctttcttcagttggagctgtttc
            Coquerel's sifaka  ggtcttgcagtaggcatatgtcttcttgccttagaaaagccccttttcttttttcaattggagctgtttc
                  Black lemur  ggtctcgcagtaggcatatgtcttcttgccttagaaaagccccttttctttcttcaattggagctgtttc
              Sclater's lemur  ggtctcgcagtaggcatatgtcttcttgccttagaaaagccccttttctttcttcaattggagctgtttc
                     Bushbaby  ------gcaatgggcgtgtgccttcttgccttagaaaagccccttttctttcttcagttggagctgtttc
                        Mouse  ggccgggcagcagacacacgccttct----ctagaaaaggcccctttctttcttcagctggagctgtttc
                          Dog  ggtctcgtgataggcatggagcttcttgccttagaaaagccccttttctttcttcatttggagctgcttc
                    Armadillo  ggtcttgtagtagacacatgctttcatgctttagaaaagccccttttctttcttcagttggagttgtttc

                        Human  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                        Chimp  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                       Bonobo  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                      Gorilla  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                    Orangutan  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                       Gibbon  cagccaggcagagctgcaaattgtcctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                       Rhesus  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
          Crab-eating macaque  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
           Pig-tailed macaque  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
               Sooty mangabey  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                       Baboon  cagccaggtagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                 Green monkey  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                        Drill  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
             Proboscis monkey  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
              Angolan colobus  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
     Golden snub-nosed monkey  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
      Black snub-nosed monkey  cagccaggcagagctgcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                     Marmoset  cagccaggcagagcagcaaattgccctcttgtgatgccaaagacagacacaaagtcgagttcagagaggt
              Squirrel monkey  cagccaggcagagcagcaaattgtcctcttgtgatgccaaagacagacacaaagtcgggttcagagaggt
          White-faced sapajou  cagccaggcagagcagcaaattgccctcttgtgatgccaaagacagacacaaagtcgggttcagagaggt
            Ma's night monkey  cagccaggcagagcagcaaattgccctcttgtgatgccaaagacagatacaaagtcgggttcagagaggt
                      Tarsier  cagccaggcagagcaataaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                  Mouse lemur  cagccaggcagagcagcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
            Coquerel's sifaka  cagccaggcagagcagcaaattgccctcttgtgatgccaaacacagacacaaagtcctgttcagagaggt
                  Black lemur  cagccaggcagagcagcaaattgccctcttgtgatgccaaacacagacataaagtcctgttcagagaggt
              Sclater's lemur  cagccaggcagagcagcaaattgccctcttgtgatgccaaacacagacataaagtcctgttcagagaggt
                     Bushbaby  cagccaggcagagcagcaaattgccctctggtgatgccaaacacagacacaaagtcctgttcagagaggt
                        Mouse  cagccaggcagagcagtgaactgccctctcgtgatgccaaacacagatacaaagtcttgttccgagaggt
                          Dog  cagccaggcagagcagcaaattgccctcttgtgatgccaaacacagaaataaaatcctgttcagagaggt
                    Armadillo  cagccaggcagagcagcaaattgtcctcttgtcatgccaaacacagaaacaaagtccggttccgagagat

                        Human  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                        Chimp  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                       Bonobo  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                      Gorilla  gattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                    Orangutan  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                       Gibbon  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacag----
                       Rhesus  aattctaagagaggaaacaaagtttctagttagaaggaagacatgacat----
          Crab-eating macaque  aattctaagagaggaaacaaagtttctagttagaaggaagacatgacat----
           Pig-tailed macaque  aattctaagagaggaaacaaagtttctagttagaaggaagacatgacat----
               Sooty mangabey  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                       Baboon  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                 Green monkey  aattct--gagagaaaacaaagtttccagttagaaggaagacatgacat----
                        Drill  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
             Proboscis monkey  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
              Angolan colobus  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
     Golden snub-nosed monkey  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
      Black snub-nosed monkey  aattctaagagagaaaacaaagtttctagttagaaggaagacatgacat----
                     Marmoset  aattctaaaagcgaaaacaaagtttctagttagaaggaagacatgacat----
              Squirrel monkey  aattctaaaagagaaaacaaagtttctagttagaaggaagacatgacat----
          White-faced sapajou  aattctaaaagagaaaacaaagtttctagttagaaggaagacatgacat----
            Ma's night monkey  aattctaaaagagaaaacaaattttctagttagaaggaagacatggcat----
                      Tarsier  aattctaagagagaaaacaaagttcctggttagaaaaaagacatgtcac----
                  Mouse lemur  aattctaagagagaaaacaaagtttgtggttagaaggaagac-cgat------
            Coquerel's sifaka  aattctaagagagaaaacaaagtttctagttagaagggagac-cgat------
                  Black lemur  aattctaagagagaaaacaaagtttctagttagaaggaagac-tgat------
              Sclater's lemur  aattctaagagagaaaacaaagtttctagttagaaggaagac-tgat------
                     Bushbaby  gattctaagagagaaaacaaagttcctagtt---aggaagtc-ctgt------
                        Mouse  agttct----gagaaaacagagtttgtggtgagaaagaagacagcacat----
                          Dog  aattctaagagagaagacaaagtctctagttaggaggacaacatggcac----
                    Armadillo  aattctaagagagaaaacaaagtttctggttagagggaagacgtggcacctat

Inserts between block 29 and 30 in window
B D                  Tarsier 634bp
B D                    Mouse 6bp
B D                      Dog 4bp

Alignment block 30 of 323 in window, 57798041 - 57798371, 331 bps 
B D                     Human  cattgccaacagaagttgaggaagttggagcaagagggagttctaggtgg----atccttg---------
B D                     Chimp  cattgccaacagaagttgaggaagtcggagcaagagggagttctaggtgg----atccttg---------
B D                    Bonobo  cattgccaacagaagttgaggaagtcggagcaagagggagttctaggtgg----atccttg---------
B D                   Gorilla  cattgccaacagaagttgaggaagtcggagcaagagggagttctaggtgg----atccttg---------
B D                 Orangutan  cattgccaacagaagttgagaaagtcggagcaagagggagttctaggtgg----atccttg---------
B D                    Gibbon  cattgccaacagaagttgagaaagtcggagcaagagggagttctaggtgg----atccttg---------
B D                    Rhesus  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
B D       Crab-eating macaque  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
           Pig-tailed macaque  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
               Sooty mangabey  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
                       Baboon  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
B D              Green monkey  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
                        Drill  cagtgccaacagaagttgggaaagtcagagcgagagggagttctaggtgg----atccttg---------
B D          Proboscis monkey  cagtgccaacagaagttgggaaagtcagagcaagagggagttctaggtgg----atccttg---------
              Angolan colobus  cagtgccaacagaagttgggaaagtcagagcaagagggagttctaggtgg----atccttg---------
B D  Golden snub-nosed monkey  cagtgccaacagaagttgggaaagtcagagcaagagggagttctaggtgg----atccttg---------
      Black snub-nosed monkey  cagtgccaacagaagttggggaagtcagagcaagagggagttctaggtgg----atccttg---------
B D                  Marmoset  cattgctgacagaggtggggaaagtcagcacaagagggagttctaggtgg----atccttg---------
B D           Squirrel monkey  cattgctaacagaggtggggaaagtcagagcaagagggagttctaggtgg----atccttg---------
          White-faced sapajou  cattactaacagaggtgggaaaagttggagcaagagggagttctaggtgg----atccttg---------
            Ma's night monkey  cattgctaacagaggtggggaaagtcagagcaagagggagttctaggtag----atccttg---------
B D                   Tarsier  caatgtcaacagaggt-gggaaagggggagcaggagggagtcctcggtcg----actctag---------
                  Mouse lemur  caatgccaacagaggtgaggagagtgggcacaactgggagtcctaagtag----gtgcttg---------
            Coquerel's sifaka  caatgccaacagaggtgaggagagtgggcacaactgggagtcctaagtag----gtgcttg---------
                  Black lemur  caatgccaacagaggtgaggagagtgggcacaacagggacttctgagtag----gtgcttg---------
              Sclater's lemur  caatgccaacagaggtgaggagagtgggcacaacagggacttctgagtag----gtgcttg---------
B D                  Bushbaby  cagtgtccacagaggtgaggagagtgggatcgagcgaggccacaccatgg----gtgctag---------
B D                     Mouse  aaatgcctaca-------agtaaactggagagaggagggaggctgcatggccgcgtgcttgcctgggcac
B D                       Dog  caatgccaacagaggtggggaggggagagccaagagagt---------------gtctttg---------
B D                 Armadillo  cagtgccaacag------ggggagtagaggggacagagagtcgtgggtag----atactta---------

                        Human  --------------------------------------aagagggaagta-----------gaatgaatt
                        Chimp  --------------------------------------aagagggaagta-----------gaatgaatt
                       Bonobo  --------------------------------------aagagggaagta-----------gaatgaatt
                      Gorilla  --------------------------------------aagagggaagta-----------gaatgaatt
                    Orangutan  --------------------------------------aagagggaagta-----------gaatgaatt
                       Gibbon  --------------------------------------aagagggaagta-----------gaatgaatt
                       Rhesus  --------------------------------------aagagggaagta-----------ggatgactt
          Crab-eating macaque  --------------------------------------aagagggaagta-----------ggatgactt
           Pig-tailed macaque  --------------------------------------aagagggaagta-----------ggatgactt
               Sooty mangabey  --------------------------------------aagagggaagta-----------ggatgactt
                       Baboon  --------------------------------------aagagggaagta-----------ggatgactt
                 Green monkey  --------------------------------------aagagggaagta-----------ggatgactt
                        Drill  --------------------------------------aagagggaagta-----------ggatgactt
             Proboscis monkey  --------------------------------------aagagggaagta-----------ggatgactt
              Angolan colobus  --------------------------------------aagagggaagta-----------ggatgactt
     Golden snub-nosed monkey  --------------------------------------aagagggaagta-----------ggatgactt
      Black snub-nosed monkey  --------------------------------------aagagggaagta-----------ggatgactt
                     Marmoset  --------------------------------------aagagggaagta-----------gaatgcatt
              Squirrel monkey  --------------------------------------aaaagggaagta-----------gaatgaatt
          White-faced sapajou  --------------------------------------aagaaggaagta-----------gaatgaatt
            Ma's night monkey  --------------------------------------aagagggaagta-----------gaatgaatt
                      Tarsier  --------------------------------------aagggggaaaca-----------ggatgaatt
                  Mouse lemur  --------------------------------------aatggggaagta----------ggaatgaatt
            Coquerel's sifaka  --------------------------------------aatggggaagta-----------gaatgaatt
                  Black lemur  --------------------------------------agtggggaagta-----------gaattaatt
              Sclater's lemur  --------------------------------------agtggggaagta-----------gaattaatt
                     Bushbaby  --------------------------------------aa--gagaagta-----------gaatgaatc
                        Mouse  acaagcttgccaggggactgagcccgagaaccatagtcaagtgataggtacgtagaccctgggagggagg
                          Dog  --------------------------------------aagagagaagaa-----------ggatgaatt
                    Armadillo  --------------------------------------aag-gtgaagaa-----------gaatgaatt

                        Human  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                        Chimp  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                       Bonobo  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                      Gorilla  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                    Orangutan  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                       Gibbon  tctcagaaaggctgttaaagatttaaattattca-ttggagaggtg----ttcttcagg--tcagggagt
                       Rhesus  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
          Crab-eating macaque  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
           Pig-tailed macaque  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
               Sooty mangabey  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
                       Baboon  tctcagaaaggctgttagagatttaaattattca-ttagagaggtg----ttcttcagt--tcagggagt
                 Green monkey  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
                        Drill  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
             Proboscis monkey  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
              Angolan colobus  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
     Golden snub-nosed monkey  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
      Black snub-nosed monkey  tctcagaaaggctgttagagatttaaattattca-ttggagaggtg----ttcttcagt--tcagggagt
                     Marmoset  tctcagaaaggctcttagagatttaaattattca-ttggagaggtg----ttcttcagg--tcacagagt
              Squirrel monkey  tctcagaaaggctcttagagatttaaattattca-ttggagaggtg----ttcttcagg--tcacagagt
          White-faced sapajou  tctcagaaaggctcttagagatttaaattattca-ttggagaggtg----ttcttcagg--tcacagagt
            Ma's night monkey  tctcagaaaggctcttagagatttaaattattca-ttggagaggtg----ttcttcagg--tcacagagt
                      Tarsier  tctcagaaaggatataatggacttaaagtattta-ttggagagatg----tt-ttcagg--ttgtaaagt
                  Mouse lemur  tctcagaaacactataatggacttaaattattca-ttggagaagtg----ttcttcagg--tcatggagt
            Coquerel's sifaka  tctcagaaacgttgtaatggacttaaattattca-ttggagaggtg----ttcttcagg--tcatggagt
                  Black lemur  tctcagaaaggctgtcatggacttaaattattcg-taggagaggtg----ttcttcagg--tcacgaggt
              Sclater's lemur  tctcagaaaggctgtcatggacttaaattattcg-taggagaggtg----ttcttcagg--tcacgaggt
                     Bushbaby  tttcagaaaggctgtgatggacttagattagtcacttggggaggtggggcttctccaggtctcacagaac
                        Mouse  tgtcaggaagcctgaaacagccctacactgttcc-ctgg----------------------ccacggagg
                          Dog  tttcag--agtctgtagtggacttaaattattca-ttggaggg-------ttctt-ggg--ttgtggact
                    Armadillo  tttcagaaagtctgtaacagacttaaattattca-ttggtgag-------gtcttcagg--ttgttgagt

                        Human  cccattttggcctgtggcagaag-cttactggattcactgctctcaca-gtgccagcaagcgccag-ttt
                        Chimp  cccattttggcctgtggcagaag-cttactggattcactgctctcacg-gtgccagcaagcaccag-ttt
                       Bonobo  cccattttggcctgtggcagaag-cttactggattcactgctctcacg-gtgccagcaagcaccag-ttt
                      Gorilla  cccattttggcctgtggcagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
                    Orangutan  cccattttggcctgtggcagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
                       Gibbon  cccattttggcctgtggcagaag-cttactggattcactgctctcata-gtgccagcaagtaccag-ttt
                       Rhesus  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
          Crab-eating macaque  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
           Pig-tailed macaque  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
               Sooty mangabey  cccattgtggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
                       Baboon  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
                 Green monkey  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
                        Drill  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
             Proboscis monkey  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttc
              Angolan colobus  cccattttggcctgtgacagaag-cttactggattcactgctctcaca-gtgccagcaagcaccag-ttt
     Golden snub-nosed monkey  cccattttggcctgtgacagaag-cttactggattcactgctctcgca-gtgccagcaagcaccag-ttt
      Black snub-nosed monkey  cccattttggcctgtgacagaag-cttactggattcactgctctcgca-gtgccagcaagcaccag-ttt
                     Marmoset  cccatttcggcctgctgcagaag-cttactggattccttgcactcaca-gtgccagcaaggaccag-ttt
              Squirrel monkey  cccatttcagcctgctgcagaag-cttactggatttattgcactcaca-gtgccagcaaggaccag-ttt
          White-faced sapajou  accatttcggcctgctgcagaag-cttactggattcattgcactcaca-gtgccagcaaggaccag-ttt
            Ma's night monkey  cccatttcggcctgctgcagaag-cttactggattcattgcactcaca-gtgccagcagggaccag-ttt
                      Tarsier  cccatcgtggcccgtggaagcag-cttaccggatgtatggctctcatg-gc-ctggctagcaccag-ctt
                  Mouse lemur  cccattttggcccgaggaagaag-cttgctggattcatggctctcaca-gccccagctagtaccag-ttt
            Coquerel's sifaka  cccattttgacctgtggaagaag-cttgctggattcactgctctcaca-gccccagctagtaccag-ttt
                  Black lemur  cccattttggcctgtggaagaag-cttgctggattcactgctctcaca-gccccagctaggaccag-ttt
              Sclater's lemur  cccattttggcctgtggaagaag-cttgctggattcactgctctcaca-gccccagctaggaccag-ttt
                     Bushbaby  tccattttggcctatgcaggaag-ctcactggagtccctcctctctcatagcctggctagc-ccag-ttt
                        Mouse  cccatttgagccagtggaggaagaatgactgggtt------tcccact-tggtc--------ctgg-ttc
                          Dog  cccattttggcctg-agcagaag-ccaactgggtttgctgttctcagg-gtcccacccagcaccaatttt
                    Armadillo  cccatcttggcctatggaaaaag-ctgactggattcaccgttctcatg-gtc----------ccag-ttt

                        Human  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                        Chimp  cttgccaga-ag-g-c-aat-aatgggttatgtattaaggatgaattacag-------------------
                       Bonobo  cttgccaga-ag-g-c-aat-aatgggttatgtattaaggatgaattacag-------------------
                      Gorilla  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                    Orangutan  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaatt-----------------------
                       Gibbon  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                       Rhesus  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
          Crab-eating macaque  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
           Pig-tailed macaque  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
               Sooty mangabey  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                       Baboon  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                 Green monkey  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
                        Drill  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattacag-------------------
             Proboscis monkey  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
              Angolan colobus  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
     Golden snub-nosed monkey  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
      Black snub-nosed monkey  cttgccaga-ag-g-c-aataaatgggttatgtattaaggatgaattatag-------------------
                     Marmoset  cttgccaga-ag-a-c-aataaatgggttatgtattaaggatgaattatag-------------------
              Squirrel monkey  cttgccaga-ag-a-c-aataaatgggttatgtattaaggatgaattatag-------------------
          White-faced sapajou  cttgccaga-ag-a-c-aataaatgggttatgtattaaggatgaattatag-------------------
            Ma's night monkey  cttgccaga-ag-a-c-aataaatgggttatgtattaaggatgaattatag-------------------
                      Tarsier  cttgccag--ag-g-c-aatgactgggttatatattatggataaattatag-------------------
                  Mouse lemur  cttgccaga-ag-g-c-aacaagtgggttatatattatggatgaattacag-------------------
            Coquerel's sifaka  cttgccaga-ag-g-c-aacaagtgggttatatattatggatgaattgtag-------------------
                  Black lemur  cttgccaga-gg-g-c-aacaagtgggttatgtattatggatgaattatag-------------------
              Sclater's lemur  cttgccaga-gg-g-c-aacaagtgggttatgtattatggatgaattatag-------------------
                     Bushbaby  cctgccaga-ag-g-caaacaaatgtgttatatattatgggtgaattatag-------------------
                        Mouse  cttgcctgatag-g-c-attgagtggattatacattatgtatgaattataa-------------------
                          Dog  tttgccgga-agaa-c-aagaactgggttatatgt----gatgaattctag-------------------
                    Armadillo  cttgctaga-ag-gac-aatacatgggttctgtagtatatatgaattatagatgttaatttttttttttt

                        Human  ----------------------------------------------------------------------
                        Chimp  ----------------------------------------------------------------------
                       Bonobo  ----------------------------------------------------------------------
                      Gorilla  ----------------------------------------------------------------------
                    Orangutan  ----------------------------------------------------------------------
                       Gibbon  ----------------------------------------------------------------------
                       Rhesus  ----------------------------------------------------------------------
          Crab-eating macaque  ----------------------------------------------------------------------
           Pig-tailed macaque  ----------------------------------------------------------------------
               Sooty mangabey  ----------------------------------------------------------------------
                       Baboon  ----------------------------------------------------------------------
                 Green monkey  ----------------------------------------------------------------------
                        Drill  ----------------------------------------------------------------------
             Proboscis monkey  ----------------------------------------------------------------------
              Angolan colobus  ----------------------------------------------------------------------
     Golden snub-nosed monkey  ----------------------------------------------------------------------
      Black snub-nosed monkey  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
              Squirrel monkey  ----------------------------------------------------------------------
          White-faced sapajou  ----------------------------------------------------------------------
            Ma's night monkey  ----------------------------------------------------------------------
                      Tarsier  ----------------------------------------------------------------------
                  Mouse lemur  ----------------------------------------------------------------------
            Coquerel's sifaka  ----------------------------------------------------------------------
                  Black lemur  ----------------------------------------------------------------------
              Sclater's lemur  ----------------------------------------------------------------------
                     Bushbaby  ----------------------------------------------------------------------
                        Mouse  ----------------------------------------------------------------------
                          Dog  ----------------------------------------------------------------------
                    Armadillo  aaggaggtactggaattgaacctgggacctcatacatgggaaggtgggcactcaaccacttgaactacat

                        Human  -----------acatcaaattttggcagaatgaagaactaaattgagctatggttttcc-------ttgt
                        Chimp  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                       Bonobo  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                      Gorilla  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                    Orangutan  -----------acatcaaattttggcagaatgaagaattaaattgagccatggttttccagtacaggcat
                       Gibbon  -----------acatcaaattttggcagaatgaagcacgaaattgagccacggttttcc-------ttgt
                       Rhesus  -----------acatcaaattttggcagaatgaagaactaaattgagccatcgttttcc-------ttgt
          Crab-eating macaque  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
           Pig-tailed macaque  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
               Sooty mangabey  -----------acatcaaattttggcagaatgaagaactaaattgagccatgattttcc-------ttgt
                       Baboon  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                 Green monkey  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                        Drill  -----------acatcaagttttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
             Proboscis monkey  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
              Angolan colobus  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
     Golden snub-nosed monkey  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
      Black snub-nosed monkey  -----------acatcaaattttggcagaatgaagaactaaattgagccatggttttcc-------ttgt
                     Marmoset  -----------acatcacattttggcagaatgaagaactaaattgatccaaggttttct-----------
              Squirrel monkey  -----------acatcacattttggcagaataaataactaaattgagccaaagttttct-----------
          White-faced sapajou  -----------acgtcacattttggcaggattaagaactaaattgagccaaggttttcc-----------
            Ma's night monkey  -----------acatcacattttggcagaatgaagaactaaattgagccaaggttttcc-----------
                      Tarsier  -----------acattagattttggcagaagggagaactaaattgagtgacagttttct-------ttgc
                  Mouse lemur  ------------cattagatcttggcagaatggagaactaaatcaaatgatggttttcc-------ttgc
            Coquerel's sifaka  -----------acattagattttggcagaatggagaactaaatcaagtgatggttttcc-------ttgc
                  Black lemur  -----------acattaaattttggcagaatggagaactaaatcgagtgatggttttcc-------ttgc
              Sclater's lemur  -----------acattaaattttggcagaatggagaactaaatcgagtgatggttttcc-------ttgc
                     Bushbaby  -----------acattcggttttggcagaatggagaactaaatcaagtgatgatttgcc-------ttgc
                        Mouse  -----------acatttgattttagatggatggaggatcaagtagag--------tatc-------ttgc
                          Dog  -----------acattaggttttggctgaatggagaactaaatcgagtgctggttttcc-------ttgc
                    Armadillo  ctgctccccagacattagattttgatggcatggaaaactaaaaggaatgatagttttcc-------ttgc

                        Human  tttctgcccgtaactaccattttt
                        Chimp  tttctgcccgtaactagcattttt
                       Bonobo  tttctgcccgtaactagcattttt
                      Gorilla  tttctgcccgtaactagcattttt
                    Orangutan  gttctgcctgtaactaccattttt
                       Gibbon  tttctgcctataactaccattttt
                       Rhesus  tttccgtctgtaactaccattttt
          Crab-eating macaque  tttccgtctgtaactaccattttt
           Pig-tailed macaque  tttccgtctgtaactaccattttt
               Sooty mangabey  tttccgtctgtaactaccattttt
                       Baboon  tttccgtctgtaactaccattttt
                 Green monkey  tttctgcctgtaactaccattttt
                        Drill  tttccgtctgtaactaccattttt
             Proboscis monkey  tttctgcctgtaactaccattttt
              Angolan colobus  tttctgcctgtaactaccattttt
     Golden snub-nosed monkey  tttctgcctgtaactaccattttt
      Black snub-nosed monkey  tttctgcctgtaactaccattttt
                     Marmoset  -----gcccataaccaccattttt
              Squirrel monkey  -----gcccataaccaccattttt
          White-faced sapajou  -----acccataaccaccattttt
            Ma's night monkey  -----gcccatagccaccattttt
                      Tarsier  tttattctcttaactaccattttt
                  Mouse lemur  tttatgcccttaactaccattttt
            Coquerel's sifaka  tttatgcccttaacaaccattttt
                  Black lemur  tttataaccttaactaccgttttt
              Sclater's lemur  tttataaccttaactaccgttttt
                     Bushbaby  tttatggtcttaactaccattttc
                        Mouse  tccatgcct-tcactaccattctt
                          Dog  ctcatgaccttaccaaccattttt
                    Armadillo  tttataccatcaactaccattttt

Inserts between block 30 and 31 in window
B D                    Mouse 352bp
B D                      Dog 181bp

Alignment block 31 of 323 in window, 57798372 - 57798483, 112 bps 
B D                     Human  acccataaattttcaaatgcatgat---cgggtggatctt-attgag--cataaaattcttctacacatt
B D                     Chimp  acccataaattttcaaatgcatgat---cgggtggatctt-attgag--cataaaattcttctaaacatt
B D                    Bonobo  acccataaattttcaaatgcatgat---cgggtggatctt-attgag--cataaaattcttctaaacatt
B D                   Gorilla  acccataaattttcaaatgcatgat---cgggtggatctt-attgag--cataaaattcttctaaacatt
B D                 Orangutan  acccagcaattttcaaatgcatgat---tgggtggatctt-attgag--cataaaattcttctaaacatt
B D                    Gibbon  acccagaaattttcaaatgcatgat---cgggtggatctt-actgag--cataaaattcttctaaacatt
B D                    Rhesus  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattattctaaacatt
B D       Crab-eating macaque  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattattctaaacatt
           Pig-tailed macaque  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattattctaaacatt
               Sooty mangabey  atccagaaattttcaaatgcat------------gatctt-attggg--cataaaattattctaaacatt
                       Baboon  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattattctaaacatt
B D              Green monkey  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattcttctaaacatt
                        Drill  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattattctaaacatt
B D          Proboscis monkey  acccagaaattttcaaatgcat------------gatcct-attgaa--cataaaattcttctaaacatt
              Angolan colobus  acccagaaattttcaaatgcat------------gatctt-attgag--cataaaattcttctaaacatt
B D  Golden snub-nosed monkey  acccagaaattttcaaatgcat------------gatcct-attgag--cataaaattcttctaaacatt
      Black snub-nosed monkey  acccagaaattttcaaatgcat------------gatcct-attgag--cataaaattcttctaaacatt
B D                  Marmoset  acccagaaattttcaaatgcatgat---cgggtggatctt-attcag--ctcaaaattctcctaagcatt
B D           Squirrel monkey  acccagaaattttcaaatgcatgat---tgggtggatctt-attgag--ctcagaattctcctaaacatt
          White-faced sapajou  acccagaaattttcaaatgcatgat---tgggtggatctt-attgag--ctcaaaattctcctaaacatt
            Ma's night monkey  acccagaatttttcaaatgcatgat---caggtggatctt-attgag--cacaaaattctcctaaacatt
B D                   Tarsier  atctagaaattttcaaacgcaagat---aaagtggatctt-accgagaacatcacattctccta-acatt
                  Mouse lemur  atcgagaaattttcaaatgcatgat---caggtggatcttaactgagactataaaattctttt-aacatt
            Coquerel's sifaka  atccagaaattttcaaatgcaagat---caggtggatcttaactgagaacataaaattctcct-aatatt
                  Black lemur  atccagacattttcaaatacaagat---caggtggatctt-actgagagcataaaattctcct-aacatt
              Sclater's lemur  atccagacattttcaaatacaagat---caggtggatctt-actgagagcataaaattctcct-aacatt
B D                  Bushbaby  atccagaaattttcaaatgcaagatcagcaggtggatctt-accaaaagcataaaattcttataaacatt
B D                       Dog  atccacacattttcaaatgcaaaat---caagtggatctt-gttcagagcataaaattctcct-aacatt
B D                 Armadillo  acctag--------aaatgaaggat---caagtagatctt-tttgggagattaaagttctcct-agcatt
B D                     Mouse  ======================================================================

                        Human  tacttaat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
                        Chimp  tacttaat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
                       Bonobo  tacttaat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
                      Gorilla  tacttaat--gat--ttattgaa-ta-tttatgtac------------------aagtaaagattattaa
                    Orangutan  tacttgat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
                       Gibbon  tacttaat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
                       Rhesus  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagattattaa
          Crab-eating macaque  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagattattaa
           Pig-tailed macaque  tacttaat--gat--ttattgaa-ta-tttatatgcaagtaaagattattaattaagtaaagattattaa
               Sooty mangabey  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagattattaa
                       Baboon  tacttaat--gat--ttattgaa-ta-tttatatataagtaaagattattaattaagtaaagattattaa
                 Green monkey  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagatt----attaagtaaagattattaa
                        Drill  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagattattaa
             Proboscis monkey  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagattattaa
              Angolan colobus  tacttaat--gat--ttattgaa-ta-tttatatac------------------aagtaaagattattaa
     Golden snub-nosed monkey  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagataattaa
      Black snub-nosed monkey  tacttaat--gat--ttattgaa-ta-tttatatacaagtaaagattattaattaagtaaagataattaa
                     Marmoset  tacttaat--gat--gtattgca-ta-tatgtatac------------------aagtaaagattattaa
              Squirrel monkey  tacttaat--gat--gtattgca-ta-tatgtatac------------------aagtaaagattattaa
          White-faced sapajou  tacttaat--gat--gtattgca-ta-tatgtatac------------------aagtaaagattattag
            Ma's night monkey  tacttaat--gat--gtattgca-ta-tatgtatac------------------aagtaaagattatgaa
                      Tarsier  tatttaat--ggt--gtaatgaa-tattttatatac------------------aagtagaggttattag
                  Mouse lemur  tatttaat--gtt--gtaatgac-agttttgtatcc------------------aagtaaagattactaa
            Coquerel's sifaka  tatttaat--gtt--gtaatgaa-tgttttgtatcc------------------aagtaaagattattaa
                  Black lemur  tatttaat--gtt--gtaatgaa-tgttttgtatcc------------------aagtaaagattattaa
              Sclater's lemur  tatttaat--gtt--gtaatgaa-tgttttgtatcc------------------aagtaaagattattaa
                     Bushbaby  tatataa-----t--gtaatgaattgttttatatcc------------------aagtaaag------ga
                          Dog  tatttatt--gatgcttactgaa-ta-ttct-----------------------gagtaaa-attcttaa
                    Armadillo  tatttattggggc--ttaatgaa-ta-t-----------------------------tgaaga-------
                        Mouse  ======================================================================

                        Human  ta
                        Chimp  ta
                       Bonobo  ta
                      Gorilla  ta
                    Orangutan  ta
                       Gibbon  ta
                       Rhesus  ta
          Crab-eating macaque  ta
           Pig-tailed macaque  ta
               Sooty mangabey  ta
                       Baboon  ta
                 Green monkey  ta
                        Drill  ta
             Proboscis monkey  ta
              Angolan colobus  tg
     Golden snub-nosed monkey  ta
      Black snub-nosed monkey  ta
                     Marmoset  ta
              Squirrel monkey  ta
          White-faced sapajou  ta
            Ma's night monkey  ta
                      Tarsier  ta
                  Mouse lemur  ga
            Coquerel's sifaka  ga
                  Black lemur  ga
              Sclater's lemur  ga
                     Bushbaby  ta
                          Dog  ga
                    Armadillo  --
                        Mouse  ==

Alignment block 32 of 323 in window, 57798484 - 57798554, 71 bps 
B D                     Human  tatgggctttgctttcaagaaaattgtagtccagatactt--gagttgactagataag-----acattgt
B D                     Chimp  tatgggctttgctttcaagaaaattgtagtccagatactt--gagttgactagataag-----acattgt
B D                    Bonobo  tatgggctttgctttcaagaaaattgtagtccagatactt--gagttgactagataag-----acattgt
B D                   Gorilla  tatgggctttgctttcaagaaaattgtagtccagatactt--gagttgattagataag-----acattgt
B D                 Orangutan  tatgggctgtgctttcaagaaaattgtagtccagatactt--gagttggctagataag-----acattat
B D                    Gibbon  tatgggctttgctttcaagaaaattgtagtccagatactt--gagttggctagataag-----acattgt
B D                    Rhesus  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acgttgt
B D       Crab-eating macaque  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acgttgt
           Pig-tailed macaque  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acgttgt
               Sooty mangabey  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acattgt
                       Baboon  tataggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acgttgt
B D              Green monkey  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acgttgt
                        Drill  tatgggctctgctttcaagaaaattgtagtccacatactt--gagttggttagataag-----acgctgt
B D          Proboscis monkey  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----atattgt
              Angolan colobus  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----acattgt
B D  Golden snub-nosed monkey  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----gtattgt
      Black snub-nosed monkey  tatgggctctgctttcaagaaaattgtagtccagatactt--gagttggttagataag-----gtattgt
B D                  Marmoset  tatggtctctgctttcaagaaaattgtagtccagatacttaagagttgcctaaataag-----acattgt
B D           Squirrel monkey  tatggtctctgctttcaagaaaatggtagtccagatacctaagagttgcctagataag-----acattgt
          White-faced sapajou  tatggtctctgctttcaagaaaattgtagtccagatacttaagagttgtctagataag-----acattgt
            Ma's night monkey  tatggtctctgctttcaagaaaattgtagtccagatacttaagagttgcctagataag-----acattgt
B D                   Tarsier  aatggcctctgctttcaagcaagttgtagtctaaatacctaagagttggttagataag-----ac---gt
                  Mouse lemur  tagggcctctgctttcaagaaagctggagtccagatacttgagaattaattagataag-----atgttgt
            Coquerel's sifaka  tagggcctctgctttcaagaaagtcgtagtccagatacttaagaattagttagataag-----acattgt
                  Black lemur  tagggcctctgctttcaagaaagttgtagtccagatatttaagaattagttagataag-----acattgt
              Sclater's lemur  tagggcctctgctttcaagaaagttgtagtccagatatttaagaattagttagataag-----acattgt
B D                  Bushbaby  taaggcctctgctttcaagaaagttatagtccagaaactt---aattggttagataag-----acatcgt
B D                     Mouse  tgtgacctctgcttctgagaacattgtagtctagatgcttaagacttggctagagaagagattacattag
B D                       Dog  gatggcctctgttgtcaagaaagttgcagtccagatccgtaagagctggctagataag-----acatggt
B D                 Armadillo  tatggcctctcctttcaagaaagtcgtagtccagataa----gagctggttgggtaag-----acattgt

                        Human  gggaaatc
                        Chimp  gggaaatc
                       Bonobo  gggaaatc
                      Gorilla  gggaaatc
                    Orangutan  ggaaaatc
                       Gibbon  gggaaatc
                       Rhesus  gggaaa--
          Crab-eating macaque  gggaaa--
           Pig-tailed macaque  gggaaa--
               Sooty mangabey  gggaaatc
                       Baboon  gggaaatc
                 Green monkey  gggaaatc
                        Drill  gggaaatc
             Proboscis monkey  gggaaatc
              Angolan colobus  gggaaatc
     Golden snub-nosed monkey  gggaaatc
      Black snub-nosed monkey  gggaaatc
                     Marmoset  gggaaa--
              Squirrel monkey  gggaca--
          White-faced sapajou  gggaaa--
            Ma's night monkey  gggaaa--
                      Tarsier  gggaaa--
                  Mouse lemur  gggaaatc
            Coquerel's sifaka  gggaaatc
                  Black lemur  gggaaatc
              Sclater's lemur  gggaaatc
                     Bushbaby  gcaacg--
                        Mouse  gggaaacg
                          Dog  ggaaaccc
                    Armadillo  gggaaatt

Inserts between block 32 and 33 in window
                 Mouse lemur 169bp
B D                    Mouse 1bp

Alignment block 33 of 323 in window, 57798555 - 57798558, 4 bps 
B D                     Human  caga
B D                     Chimp  caga
B D                    Bonobo  caga
B D                   Gorilla  caga
B D                 Orangutan  caga
B D                    Gibbon  --ga
               Sooty mangabey  caga
                       Baboon  caga
B D              Green monkey  caga
                        Drill  caga
B D          Proboscis monkey  caga
              Angolan colobus  caga
B D  Golden snub-nosed monkey  caga
      Black snub-nosed monkey  caga
            Coquerel's sifaka  caga
                  Black lemur  caga
              Sclater's lemur  caga
B D                     Mouse  caga
B D                       Dog  caga
B D                 Armadillo  caga
                 Mouse lemur  ====
B D                    Rhesus  ----
B D                   Tarsier  ----
          Pig-tailed macaque  ----
B D       Crab-eating macaque  ----
         White-faced sapajou  ----
B D                  Bushbaby  ----
           Ma's night monkey  ----
B D           Squirrel monkey  ----
B D                  Marmoset  ----

Inserts between block 33 and 34 in window
                 Black lemur 10bp
             Sclater's lemur 10bp

Alignment block 34 of 323 in window, 57798559 - 57798559, 1 bps 
B D                     Human  -g
B D                     Chimp  -g
B D                    Bonobo  -g
B D                   Gorilla  -g
B D                 Orangutan  -g
B D                    Gibbon  -g
               Sooty mangabey  -g
                       Baboon  -g
B D              Green monkey  -g
                        Drill  -g
B D          Proboscis monkey  -g
              Angolan colobus  -g
B D  Golden snub-nosed monkey  -g
      Black snub-nosed monkey  -g
            Coquerel's sifaka  -g
B D                     Mouse  -a
B D                       Dog  -g
B D                 Armadillo  t-
             Sclater's lemur  ==
                 Mouse lemur  ==
                 Black lemur  ==
B D                    Rhesus  --
B D                   Tarsier  --
          Pig-tailed macaque  --
B D       Crab-eating macaque  --
         White-faced sapajou  --
B D                  Bushbaby  --
           Ma's night monkey  --
B D           Squirrel monkey  --
B D                  Marmoset  --

Inserts between block 34 and 35 in window
           Coquerel's sifaka 86bp

Alignment block 35 of 323 in window, 57798560 - 57798575, 16 bps 
B D                     Human  tccagagtctgtgcct-
B D                     Chimp  tccagagtctgttccc-
B D                    Bonobo  tccagagtctgtttcc-
B D                   Gorilla  tccagggtctgttccc-
B D                 Orangutan  tccagagtccgttccc-
B D                    Gibbon  tccagagtccattccc-
B D                    Rhesus  tccagagtccattccc-
B D       Crab-eating macaque  tccagagtccattccc-
           Pig-tailed macaque  tccacagtccattccc-
               Sooty mangabey  tccagagtccattccc-
                       Baboon  tccagagtccattccc-
B D              Green monkey  tccagagtccattccc-
                        Drill  tccagagtccattccc-
B D          Proboscis monkey  tccagagtccattccc-
              Angolan colobus  tccagagtccattccc-
B D  Golden snub-nosed monkey  tccagagtccattccc-
      Black snub-nosed monkey  tccagagtccattccc-
B D                  Marmoset  tccagagtcccttccc-
B D           Squirrel monkey  tccatagtcccttccc-
          White-faced sapajou  tccagagtcccttccc-
            Ma's night monkey  tccagagtcccttccc-
B D                   Tarsier  tccagagaccctttcc-
B D                  Bushbaby  -ccagaaactcttctc-
B D                     Mouse  -------tcctt-----
B D                       Dog  -------acccttccc-
B D                 Armadillo  -------tcccatccta
             Sclater's lemur  =================
           Coquerel's sifaka  =================
                 Mouse lemur  =================
                 Black lemur  =================

Alignment block 36 of 323 in window, 57798576 - 57798599, 24 bps 
B D                     Human  aaatcaacttcttcaaggggaaaa
B D                     Chimp  aaatcaacttcttcaaggggaaaa
B D                    Bonobo  aaatcaacttcttcaaggggaaaa
B D                   Gorilla  aaatcagcttcttcaaggggaaaa
B D                 Orangutan  aaatcaacttcttcaaggggagaa
B D                    Gibbon  acatcaacttcttcaaggggaaaa
B D                    Rhesus  aaatcaacttcttcaaggggaaaa
B D       Crab-eating macaque  aaatcaacttcttcaaggggaaaa
           Pig-tailed macaque  aaatcaacttcttcaaggggaaaa
               Sooty mangabey  aaatcaacttcttcaaggggaaaa
                       Baboon  aaatcaacttcttcaaggggaaaa
B D              Green monkey  aaatcaacttcttcaaggggaaaa
                        Drill  aaatcaacttcttcaaggggaaaa
B D          Proboscis monkey  aaatcaacttcttcaaggggaaaa
              Angolan colobus  aaatcaacttcttcaaggggaaaa
B D  Golden snub-nosed monkey  aaatcaacttcttcaaggggaaaa
      Black snub-nosed monkey  aaatcaacttcttcaaggggaaaa
B D                  Marmoset  aagtcaacttcttcaaggggaaaa
B D           Squirrel monkey  aagtcaacttcttcaaggggaaaa
          White-faced sapajou  aagtcaatttcttcaaagggaaaa
            Ma's night monkey  aagtcaacttcttcaaggggaaaa
B D                   Tarsier  aagtcaa---cttcaaggggaaag
                  Black lemur  aaatcaacttcttcaaggggaaaa
              Sclater's lemur  aaatcaacttcttcaaggggaaaa
B D                  Bushbaby  aaatcaacttcctcaagggaaaaa
B D                     Mouse  caagcaaccctttcaaggggaaaa
B D                       Dog  acatcaattccttcaaggggaaaa
B D                 Armadillo  aaatcaactcattcaagggggaaa
           Coquerel's sifaka  ========================
                 Mouse lemur  ========================

Inserts between block 36 and 37 in window
     Black snub-nosed monkey 238bp
                 Black lemur 645bp
             Sclater's lemur 646bp
B D                    Mouse 967bp

Alignment block 37 of 323 in window, 57798600 - 57798604, 5 bps 
B D                     Human  gaaat
B D                     Chimp  gaaat
B D                    Bonobo  gaaat
B D                   Gorilla  gaaat
B D                 Orangutan  gaaat
B D                    Gibbon  gacat
B D                    Rhesus  taaat
B D       Crab-eating macaque  taaat
           Pig-tailed macaque  taaat
               Sooty mangabey  taaat
                       Baboon  taaat
B D              Green monkey  taaat
                        Drill  taaat
B D          Proboscis monkey  taaat
              Angolan colobus  taaat
B D  Golden snub-nosed monkey  taaat
B D                  Marmoset  taaa-
B D           Squirrel monkey  taca-
          White-faced sapajou  gaaat
            Ma's night monkey  gaaat
B D                   Tarsier  tacat
B D                  Bushbaby  tagat
B D                       Dog  taagt
B D                 Armadillo  taagt
             Sclater's lemur  =====
           Coquerel's sifaka  =====
                 Mouse lemur  =====
                 Black lemur  =====
     Black snub-nosed monkey  =====
B D                     Mouse  =====

Inserts between block 37 and 38 in window
B D                Armadillo 70bp

Alignment block 38 of 323 in window, 57798605 - 57798610, 6 bps 
B D                     Human  ttattc
B D                     Chimp  ttattc
B D                    Bonobo  ttattc
B D                   Gorilla  ttattc
B D                 Orangutan  ttattc
B D                    Gibbon  ttattc
B D                    Rhesus  ttattc
B D       Crab-eating macaque  ttattc
           Pig-tailed macaque  ttattc
               Sooty mangabey  ttattc
                       Baboon  ttattc
B D              Green monkey  ttattc
                        Drill  ttattc
B D          Proboscis monkey  ttattc
              Angolan colobus  ttattc
B D  Golden snub-nosed monkey  ttattc
          White-faced sapajou  ttattc
            Ma's night monkey  tta---
B D                   Tarsier  taattc
B D                  Bushbaby  tcattc
B D                       Dog  gaattc
             Sclater's lemur  ======
           Coquerel's sifaka  ======
                 Mouse lemur  ======
                 Black lemur  ======
     Black snub-nosed monkey  ======
B D                     Mouse  ======
B D                 Armadillo  ======
B D           Squirrel monkey  ------
B D                  Marmoset  ------

Inserts between block 38 and 39 in window
                      Baboon 3bp
                       Drill 2bp
B D         Proboscis monkey 1bp
             Angolan colobus 1bp
B D Golden snub-nosed monkey 1bp

Alignment block 39 of 323 in window, 57798611 - 57798613, 3 bps 
B D                     Human  ttt
B D                     Chimp  -tt
B D                    Bonobo  -tt
B D                   Gorilla  -tt
B D                 Orangutan  -tt
B D                    Gibbon  -at
               Sooty mangabey  -tt
                       Baboon  ttt
B D          Proboscis monkey  ttt
              Angolan colobus  ttt
B D  Golden snub-nosed monkey  ttt
      Black snub-nosed monkey  ttt
B D                   Tarsier  att
B D                  Bushbaby  att
B D                       Dog  ctt
             Sclater's lemur  ===
           Coquerel's sifaka  ===
                 Mouse lemur  ===
                 Black lemur  ===
B D                    Rhesus  ---
                       Drill  ===
B D              Green monkey  ---
          Pig-tailed macaque  ---
B D       Crab-eating macaque  ---
         White-faced sapajou  ---
B D                     Mouse  ===
           Ma's night monkey  ---
B D                 Armadillo  ===
B D           Squirrel monkey  ---
B D                  Marmoset  ---

Inserts between block 39 and 40 in window
B D                      Dog 13bp

Alignment block 40 of 323 in window, 57798614 - 57798614, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                    Bonobo  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
               Sooty mangabey  t
                       Baboon  t
B D          Proboscis monkey  t
              Angolan colobus  t
B D  Golden snub-nosed monkey  t
      Black snub-nosed monkey  c
B D                   Tarsier  t
B D                  Bushbaby  t
             Sclater's lemur  =
           Coquerel's sifaka  =
                 Mouse lemur  =
                 Black lemur  =
B D                    Rhesus  -
                       Drill  =
B D              Green monkey  -
          Pig-tailed macaque  -
B D       Crab-eating macaque  -
         White-faced sapajou  -
B D                     Mouse  =
           Ma's night monkey  -
B D                 Armadillo  =
B D           Squirrel monkey  -
B D                  Marmoset  -
B D                       Dog  =

Inserts between block 40 and 41 in window
              Sooty mangabey 4bp
                      Baboon 4bp
B D         Proboscis monkey 4bp
             Angolan colobus 234bp
B D Golden snub-nosed monkey 4bp
     Black snub-nosed monkey 4bp
B D                  Tarsier 1438bp
B D                 Bushbaby 46bp

Alignment block 41 of 323 in window, 57798615 - 57798615, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                    Bonobo  c
B D                   Gorilla  c
B D                    Gibbon  t
             Sclater's lemur  =
           Coquerel's sifaka  =
                 Mouse lemur  =
                 Black lemur  =
B D                    Rhesus  -
B D          Proboscis monkey  =
B D                   Tarsier  =
                       Drill  =
B D              Green monkey  -
                      Baboon  =
              Sooty mangabey  =
          Pig-tailed macaque  -
B D       Crab-eating macaque  -
         White-faced sapajou  -
B D                 Orangutan  -
     Black snub-nosed monkey  =
B D  Golden snub-nosed monkey  =
             Angolan colobus  =
B D                  Bushbaby  =
B D                     Mouse  =
           Ma's night monkey  -
B D                 Armadillo  =
B D           Squirrel monkey  -
B D                  Marmoset  -
B D                       Dog  =

Alignment block 42 of 323 in window, 57798616 - 57798620, 5 bps 
B D                     Human  --ttttc
B D                     Chimp  --tt---
B D                    Bonobo  --t----
B D                    Gibbon  --t----
               Sooty mangabey  --t----
                       Baboon  --t----
                        Drill  --t----
B D          Proboscis monkey  --t----
              Angolan colobus  --t----
B D  Golden snub-nosed monkey  --t----
      Black snub-nosed monkey  --t----
B D                  Marmoset  ttt----
B D           Squirrel monkey  ttc----
          White-faced sapajou  ttt----
            Ma's night monkey  ttc----
             Sclater's lemur  =======
           Coquerel's sifaka  =======
                 Mouse lemur  =======
                 Black lemur  =======
B D                    Rhesus  -------
B D                   Tarsier  =======
B D              Green monkey  -------
          Pig-tailed macaque  -------
B D       Crab-eating macaque  -------
B D                 Orangutan  -------
B D                  Bushbaby  =======
B D                     Mouse  =======
B D                 Armadillo  =======
B D                       Dog  =======
B D                   Gorilla  -------

Inserts between block 42 and 43 in window
B D Golden snub-nosed monkey 181bp
     Black snub-nosed monkey 1bp

Alignment block 43 of 323 in window, 57798621 - 57798626, 6 bps 
B D                     Human  tttttt
B D                     Chimp  tctttt
B D                    Bonobo  tctttt
B D                   Gorilla  tttttt
B D                 Orangutan  tttttt
B D                    Gibbon  tttttt
B D                    Rhesus  ---ttt
B D       Crab-eating macaque  --tttt
           Pig-tailed macaque  --tttt
               Sooty mangabey  tttttt
                       Baboon  tttttt
B D              Green monkey  ----tt
                        Drill  tttttt
B D          Proboscis monkey  tttttt
              Angolan colobus  tttttt
B D  Golden snub-nosed monkey  tttttt
      Black snub-nosed monkey  tttttt
B D                  Marmoset  attatt
B D           Squirrel monkey  tttttt
          White-faced sapajou  tttttt
            Ma's night monkey  tttttt
             Sclater's lemur  ======
           Coquerel's sifaka  ======
                 Mouse lemur  ======
                 Black lemur  ======
B D                   Tarsier  ======
B D                  Bushbaby  ======
B D                     Mouse  ======
B D                 Armadillo  ======
B D                       Dog  ======

Alignment block 44 of 323 in window, 57798627 - 57798873, 247 bps 
B D                     Human  ttttt----tttgagacagattcttgctttgtggcccaggctggagtacagtggcacaatctcggctcac
B D                     Chimp  ttttt----tttgagacagattcttgctttgtggcccaggctggagtacagtggcgcaatctcagctcac
B D                    Bonobo  ttttt----tttgagacagattcttgctttgtggcccaggctggagtacagtggcgcaatctcagctcac
B D                   Gorilla  ttttt----tttgagacagattcttgctttgtggcccaggctggagtacagtggcgcaatcttggctcac
B D                 Orangutan  ttttt----tttgagacagagtcttgctttgtggcccaggctggagtacagtggcacaatctcggctcac
B D                    Gibbon  ttttt----tccgagacagagtcttgctttgtggcccaggctggagtacagtggcgtaatctcggctcac
B D                    Rhesus  ttttt----tttgagacagagtcttgctttgtcacccaggctggagtgcaatggaacgatctcggctcac
B D       Crab-eating macaque  ttttt----tttgagacagagtcttgctttgtcacccaggctggagtgcaatggaatgatctcggctcac
           Pig-tailed macaque  ttttt----tttgagacagagtcttgctttgtcacccaggctggagtgcaatggaacgatctcggctcac
               Sooty mangabey  ttttt----tttgagacagagtcttgctttgtcgcccaggctgaagtgcagtggaacgatctcggctcac
                       Baboon  ttttt----tttgagacagagtcttgctttgtcgcccaggctggagtgcagtggaatgatctcggctcac
B D              Green monkey  ttttt----tttgagacagagtcttgctttgtcgcccaggctggagtgcagtggaacgatctcggctcac
                        Drill  ttttt----tttgagacagagtcttgctttgtcgcccaggctgaagtgcagtggaacgatctcggctcac
              Angolan colobus  ttttt----tttgagacagagtcttgctttgtcgcccaggctggagcgcagtggaacgatctcggctcac
B D  Golden snub-nosed monkey  ttttt----tttgagacagagtcttgctttgtcgcccaggctgcagcgcagtggaacgatctcggctcac
      Black snub-nosed monkey  tttttaggatttgagacagagtcttgctttgtcgcccaggctgcagcgcagtggaacgatctcggctcac
B D                  Marmoset  ctttt----ttagagatggagtctta---catcacctgggctggagtgcaatggcacgatattggctcac
B D           Squirrel monkey  ttttt----tttgagatggagtctcacaccatcacctgggctagagtgcaatggcacaatatcggctcac
          White-faced sapajou  ttttt----tttgagttggagtctcacaccatcacctgggctggagtgcaatggcacgatatcggctcac
            Ma's night monkey  ttttt----tttgagatggagtctcacaccatcacctgggctggagtgcaatggcacgatatcggctcac
             Sclater's lemur  ======================================================================
           Coquerel's sifaka  ======================================================================
                 Mouse lemur  ======================================================================
                 Black lemur  ======================================================================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Mouse  ======================================================================
B D                 Armadillo  ======================================================================
B D                       Dog  ======================================================================

                        Human  tgcaacctctgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactacaggca
                        Chimp  tgcaacctctgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactgtaggca
                       Bonobo  tgcaacctctgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactgtaggca
                      Gorilla  tgcaacctctgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactgtaggca
                    Orangutan  tgcaacctctgcctcccgggttcaagcagttctcctccctcagcctcccaagtagctgggactataggca
                       Gibbon  tgcaacctctgcctcctgggttcaagcagttctcctccctcagcctcccaagtagctgggactataggca
                       Rhesus  tgcaacctctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
          Crab-eating macaque  tgcaacctctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
           Pig-tailed macaque  tgcaacctctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
               Sooty mangabey  tgcaacttctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
                       Baboon  tgcaacttctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
                 Green monkey  tgcaacctctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
                        Drill  tgcaacttctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
              Angolan colobus  tgcaacctctgcctcccgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
     Golden snub-nosed monkey  tgcaacctctgcctcctgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
      Black snub-nosed monkey  tgcaacctctgcctcctgggttcaagcagttctcctgcctcagcct-ccaagtagctgggactacaggca
                     Marmoset  tgcaacgtccgtctctctggttcatgcaattctcctgcctcagc-----------ctgcgattacaggca
              Squirrel monkey  tacaacatccatctccctggttcacgcaattctcctgcctcagcttcccaagtagctgggattacaggca
          White-faced sapajou  tgcaacgtccatctccctggttcacgcaattcttctgcctcagcctcccaagtaagtgggattacaggca
            Ma's night monkey  tgcaacatccggctccctggttcacgtaatt---ctgcctcagcctcccaagtagctgggattacaggca
              Sclater's lemur  ======================================================================
            Coquerel's sifaka  ======================================================================
                  Mouse lemur  ======================================================================
                  Black lemur  ======================================================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                     Bushbaby  ======================================================================
                        Mouse  ======================================================================
                    Armadillo  ======================================================================
                          Dog  ======================================================================

                        Human  cccaccaccacgcctggctaat-ttttgtatttttagtacagacggggtttcaccatattggccaggcca
                        Chimp  cccaccaccacgcccggctaat-ttttgtatttttagtagagacggggtttcaccgtattggccaggcca
                       Bonobo  cccaccaccacgcccggctaat-ttttgtatttttagtagagacggggtttcaccgtattggccaggcca
                      Gorilla  cccaccaccacgcccggctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggcca
                    Orangutan  cccaccaccacgcccggctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggccg
                       Gibbon  cccaccaccacacctggctaat-tttcgtatttttagtagagacagggtttcaccatattggccaggctg
                       Rhesus  cccgccacc------tgctaat-ttttgtattgttagtagagacagggtttcaccatattggccaggctg
          Crab-eating macaque  cgcgccacc------tgctaat-ttttgtattgttagtagagacagggtttcaccatattggccaggctg
           Pig-tailed macaque  cccgccacc------tgctaat-ttttgtattgttagtagagacggggtttcaccatattggccaggctg
               Sooty mangabey  cccgccacc------tgctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
                       Baboon  cccaccacc------tgctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
                 Green monkey  cctgccacc------tgctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
                        Drill  cccgccacc------tgctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
              Angolan colobus  cctgccacc------cgctaat-ttttgtatttttagtagagacgggatttcaccatattggccaggctg
     Golden snub-nosed monkey  cccgccacc------ctctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
      Black snub-nosed monkey  cccgccacc------ctctaat-ttttgtatttttagtagagacggggtttcaccatattggccaggctg
                     Marmoset  -----------------------ttttgtatttttagtatagacagggtttcactatgttggccagactg
              Squirrel monkey  cacaccatcccatctggctaattttctgtgtttttagtagagacagagtttcaatatgttggccagactg
          White-faced sapajou  cacaccatcccacctggctaattttctgtatttttagtagagacagggtttcactatgttggccagactg
            Ma's night monkey  cataccatcccacctggctaattttttgtatttttagtagagacagggtttcactatgttggccagactg
              Sclater's lemur  ======================================================================
            Coquerel's sifaka  ======================================================================
                  Mouse lemur  ======================================================================
                  Black lemur  ======================================================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                     Bushbaby  ======================================================================
                        Mouse  ======================================================================
                    Armadillo  ======================================================================
                          Dog  ======================================================================

                        Human  gtctcgaactcctgacctcgtgatccacccacctcaccctcc
                        Chimp  gtctcgaactcctgacctcgtgatccacccacctcagcctcc
                       Bonobo  gtctcgaactcctgacctcgtgatccacccacctcagcctcc
                      Gorilla  gtctcgaactcctgaccttgtgatccacccacctcagcctcc
                    Orangutan  gtctcgaactcctgaccttgtgatccacccgtctcagcctcc
                       Gibbon  gtctcgaactcctgaccttgtgatctgcccacctcagcctcc
                       Rhesus  gtcttgtactcctgaccttgtgatccgcccgcctcagcctcc
          Crab-eating macaque  gtcttgtactcctgaccttgtgatccgcccgcctcagcctcc
           Pig-tailed macaque  gtcttgtactcctgaccttgtgatccgcctgcctcagcctcc
               Sooty mangabey  gtcttgaactcctgaccttgtgatccgcccgcctcagcctcc
                       Baboon  gtcttgaactcctgaccttgtgatccgcccgcctcagcctcc
                 Green monkey  gtcttgaactcctgaccttgtgatccgcccgcctcagcctcc
                        Drill  gtcttgaactcctgaccttgtgatccacccgcctcagcctcc
              Angolan colobus  gtcttgaactcctgaccttgtgatccgcctgcctcagcctcc
     Golden snub-nosed monkey  gtcttgaactcctgaccttgtgatcctcctgcctcagcctcc
      Black snub-nosed monkey  gtcttgaactcctgaccttgtgatcctcctgcctcagcctcc
                     Marmoset  gtcttaaaatcctgaccttgtgatcctccagccttggcctcc
              Squirrel monkey  gtcttgaaatcctgaccttgtgatcctccagccttggcctcc
          White-faced sapajou  gtcttgaaatcctgaccttgtgatcctccagccttggcctcc
            Ma's night monkey  gtattgaaatcctgaccttgtgatcctccagccttggcctcc
              Sclater's lemur  ==========================================
            Coquerel's sifaka  ==========================================
                  Mouse lemur  ==========================================
                  Black lemur  ==========================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ==========================================
                     Bushbaby  ==========================================
                        Mouse  ==========================================
                    Armadillo  ==========================================
                          Dog  ==========================================

Alignment block 45 of 323 in window, 57798874 - 57798920, 47 bps 
B D                     Human  caaagtgctgggattacaggtatgagccaccgtgcccggccaagaaa
B D                     Chimp  caaagtgctgggattacaggtgtgagccaccgtgcccagccaggaaa
B D                    Bonobo  caaagtgctgggattacaggtgtgagccaccgtgcccagccaggaaa
B D                   Gorilla  caaagtgctgggattacaggtgtgagccaccgtgcccagccaagaaa
B D                 Orangutan  caaagtgctgggattacaggcgtgagccactgtgcccggccaagaaa
B D                    Gibbon  caaagtgctgggatta----------ccaccgtgcccggccaagaaa
B D                    Rhesus  caaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
B D       Crab-eating macaque  caaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
           Pig-tailed macaque  caaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
               Sooty mangabey  caaagtgctggggttacaggtgtgagccactgcgcccggccaagaaa
                       Baboon  caaagtgctgggattacaggtgtgagccactgcgcccggccaagaaa
B D              Green monkey  taaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
                        Drill  caaagtgctgggattacaggtgtgagccactgcgcctggccaagaaa
              Angolan colobus  caaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
B D  Golden snub-nosed monkey  caaagtgctgggattacaggtgtgagccaccacgcccggccaagaaa
      Black snub-nosed monkey  caaagtgctgggattacaggtgtgagccaccgcgcccggccaagaaa
B D                  Marmoset  caaaatgctggaattacaggtgtgagccaccatgcctggcta-gaaa
B D           Squirrel monkey  caaagtgctggaattacaggtgtgagccaccatgcctggcta-gaaa
          White-faced sapajou  caaagtgctggaattacaggtgtgagccaccatgcctggcta-gaaa
            Ma's night monkey  caaagtgctggaattacaggtatgagccaccatgcctggcta-gaaa
B D                  Bushbaby  cacagttctggg--tactg----------------------------
             Sclater's lemur  ===============================================
           Coquerel's sifaka  ===============================================
                 Mouse lemur  ===============================================
                 Black lemur  ===============================================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ===============================================
B D                     Mouse  ===============================================
B D                 Armadillo  ===============================================
B D                       Dog  ===============================================

Alignment block 46 of 323 in window, 57798921 - 57798958, 38 bps 
B D                     Human  tttattcttttaactcaaatatgttaattcattcacgc
B D                     Chimp  tttattcttttaactcaaatatgttaattcattcatgc
B D                    Bonobo  tttattcttttaactcaaatatgttaattcattcatgc
B D                   Gorilla  tgtattcttttaactcaaatatgttaattcattcacgc
B D                 Orangutan  tttattcttttaactcaaatatgttaattcattcaaga
B D                    Gibbon  tttattcttttaactcaaatatgttaattcattcaagc
B D                    Rhesus  tttattcttttaactcaaatatgttaattcattcaagc
B D       Crab-eating macaque  tttattcttttaactcaaatatgttaattcattcaagc
           Pig-tailed macaque  tttattcttttaactcaaatatgttaattcattcaagc
               Sooty mangabey  tttattcttttaactcaaatatgttaattcattcaagc
                       Baboon  tttattcttttaactcaaatatgttaattcattcaagc
B D              Green monkey  tttattcttttaactcaaatatgttaattcattcaagc
                        Drill  tttattcttttaactcaaatatgttaattcattcaagc
              Angolan colobus  tttattcttttaactcaaatatgttaattcattcaagc
B D  Golden snub-nosed monkey  tttattcttttaactcagatatgttaattcattcaagc
      Black snub-nosed monkey  tttattcttttaactcagatatgttaattcattcaagc
B D                  Marmoset  tttatttttttaactcaaatatg----ttaattcaagc
B D           Squirrel monkey  tttatttttttaactcaaatatgttaattaattcaagc
          White-faced sapajou  tttatttttttaactcaaatatgttaattaattcgagc
            Ma's night monkey  tttatttttttaactcaaatatgttaattcattcaagc
B D                       Dog  -----------------------ttaaatcattcaacc
             Sclater's lemur  ======================================
           Coquerel's sifaka  ======================================
                 Mouse lemur  ======================================
                 Black lemur  ======================================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================
B D                  Bushbaby  --------------------------------------
B D                     Mouse  ======================================
B D                 Armadillo  ======================================

Alignment block 47 of 323 in window, 57798959 - 57798976, 18 bps 
B D                     Human  aaaactt-aagaatac-ttg
B D                     Chimp  aaaactt-aagaatac-ttg
B D                    Bonobo  aaaactt-aagaatac-ttg
B D                   Gorilla  aaaactt-aagaatac-ttg
B D                 Orangutan  aaaactt-aagaatac-ttg
B D                    Gibbon  aaaactt-atgaatac-ttg
B D                    Rhesus  gaaactt-aagaatgc-ttg
B D       Crab-eating macaque  gaaactt-aagaatgc-ttg
           Pig-tailed macaque  gaaactt-aagaatgc-ttg
               Sooty mangabey  gaaactt-aagaatgc-ttg
                       Baboon  gaaactt-aagaatgc-ttg
B D              Green monkey  gaaactt-aagaatgc-ttg
                        Drill  gaaactt-aagaatgc-ttg
              Angolan colobus  gaaactt-aagaatgc-ttg
B D  Golden snub-nosed monkey  gaaactt-aagaatgc-ttg
      Black snub-nosed monkey  gaaactt-aagaatgctttg
B D                  Marmoset  aaaactt---gagttc-ttg
B D           Squirrel monkey  aaaactt-aagagtgc-ttg
          White-faced sapajou  aaaactt-aagagtgc-ttg
            Ma's night monkey  aaaactt-aagagtgc-ttg
B D                  Bushbaby  aaaacct-gaggatat----
B D                       Dog  aaaatgtgaagagggc-ct-
B D                 Armadillo  aaaagtt-gagaatat----
             Sclater's lemur  ====================
           Coquerel's sifaka  ====================
                 Mouse lemur  ====================
                 Black lemur  ====================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ====================
B D                     Mouse  ====================

Alignment block 48 of 323 in window, 57798977 - 57799043, 67 bps 
B D                     Human  ctatctgctaggcact-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacaaacaaag
B D                     Chimp  ctatctgctaggcact-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacaaacaaag
B D                    Bonobo  ctatctgctaggcact-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacaaacaaag
B D                   Gorilla  gtatctgctaggcact-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacaaacaaag
B D                 Orangutan  ctatctgctaggcact-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacaaacaaag
B D                    Gibbon  ttatctgctaggcgct-gttgtaggtgcagagaagctgagaatatgatggtgagcaagacagacaaag
B D                    Rhesus  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
B D       Crab-eating macaque  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
           Pig-tailed macaque  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
               Sooty mangabey  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
                       Baboon  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
B D              Green monkey  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
                        Drill  ctatctgctaggcact-gttgtaggtgctgagaagctgagaatatgatggtgaacaagacagacaaag
              Angolan colobus  ctatctgctgggcact-gttgtaggtgctgagaagctgagaatatgatggtgaaca----agacaaag
B D  Golden snub-nosed monkey  ctatctgctgggcact-gttgtaggtgctgagaagctgagaatatgatggtgaaca----agacaaag
      Black snub-nosed monkey  ctatctgctgggcact-gttgtaggtgctgagaagctgagaatatgatggtgaaca----agacaaag
B D                  Marmoset  ctatttgctaggcact-gttgtacgtgctgagaagccgagactatgatggtgaacaagacagacaaag
B D           Squirrel monkey  ctatttgctaggcact-gttgtacgtgctgagacgctgagactatgatggtgaacaagacagacaaag
          White-faced sapajou  ctatttgctaggcact-gttgtacgtgctgagaagctgagactatgatggtgaacaagacagacaaag
            Ma's night monkey  ctattagctaggcact-gttgtacgtgctgagaagctgagactgtgatggtgaacgagccagacaaag
            Coquerel's sifaka  ctatctgctaggcacc-attttaggtgctgaaaacctgaggatatggtagtgaacaagacagacaag-
B D                  Bushbaby  ---------------------------------------------ggcactgaacaagacagatgag-
B D                       Dog  ctatctgccaggcactcattttaggtcctga-aagcagaga--atggtggtgagcaagacagagaag-
B D                 Armadillo  ------------------------------------------------ggtgcacaggacagacaag-
             Sclater's lemur  ====================================================================
                 Mouse lemur  ====================================================================
                 Black lemur  ====================================================================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ====================================================================
B D                     Mouse  ====================================================================

Alignment block 49 of 323 in window, 57799044 - 57799325, 282 bps 
B D                     Human  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                     Chimp  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                    Bonobo  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                   Gorilla  g----tccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                 Orangutan  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                    Gibbon  gtccctccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                    Rhesus  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D       Crab-eating macaque  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
           Pig-tailed macaque  gtccttactcttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
               Sooty mangabey  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
                       Baboon  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D              Green monkey  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
                        Drill  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
              Angolan colobus  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D  Golden snub-nosed monkey  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
      Black snub-nosed monkey  gtccttccttttaaggatattactagagggggaaataggcaatgaacaagtataaa--gggactgga---
B D                  Marmoset  gtccttccttttaaggatattactagagggggagataggcagtgaacaagcacaca--gggtctgga---
B D           Squirrel monkey  gtccttccttttaaggatattactcgagggggagataggcagtgaacaagtataca--gggtctgga---
          White-faced sapajou  gtccttcctattaaggatattactagaggagaagttaggcagtgaacaaatataca--gggtctaga---
            Ma's night monkey  gtccttccttttaaggatattactagagggggagataggcagtgaacaagtataca--gggtctgga---
                  Mouse lemur  gtccttcctctttaggatattactcgtgggggagatagacagtgaacatgtatcaa--gggactgca---
            Coquerel's sifaka  gttcttcctctttaggatattactagacggggagattgacaatgaacacatatcaa--gggactgca---
B D                  Bushbaby  gtccttcctctttagggtattactagagcaggaggcagacagtgaataggcatcaaaggggacttcactc
B D                       Dog  gtccttgctcctaagc------------------------------------------agtgttcga---
B D                 Armadillo  gcccttggtcttagggttgttactagag--ggaagaagacagtgagcaagaataaa--ggaactggg---
             Sclater's lemur  ======================================================================
                 Black lemur  ======================================================================
B D          Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Tarsier  ======================================================================
B D                     Mouse  ======================================================================

                        Human  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggggaggtgat
                        Chimp  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggggaggtgat
                       Bonobo  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggggaggtgat
                      Gorilla  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggggaggtgat
                    Orangutan  --gcaggtatgggaagcagtattagggtc---------gtca--ggaaatgcctccc-tggggaggtgac
                       Gibbon  --acgggtatgggaagcagtattagagtg---------gtca--ggaaatgcctccc-tggggaggtgac
                       Rhesus  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctcct-cggggaggtgac
          Crab-eating macaque  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctcct-cggggaggtgac
           Pig-tailed macaque  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctcct-cggggaggtgac
               Sooty mangabey  --gcaggtatgggaagcagtattaaggtg---------gtca--ggaaatgcctcct-cggggaggtgac
                       Baboon  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctcct-cggggagatgac
                 Green monkey  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctcct-cggggaggtgac
                        Drill  --gcaggtatgggaagcagtattaaggtg---------gtca--ggaaatgcctcct-cggggaggtgac
              Angolan colobus  --gcggatatgggaagcagtattagggtg---------gtca--ggaaatgcctcctccgggggggtgac
     Golden snub-nosed monkey  --gcagatacgggaagcagtattagggtg---------gtca--ggaattgcctcctcccggggggtgac
      Black snub-nosed monkey  --gcagatatgggaagcagtattagggtg---------gtca--ggaattgcctcctcccggggggtgac
                     Marmoset  --gcaggtatgggaagcagtatcagggtg---------gtca--ggaaatgcgtccc-tggggaagtgac
              Squirrel monkey  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tgggaatgtgac
          White-faced sapajou  --gcaggcatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggagaggtgac
            Ma's night monkey  --gcaggtatgggaagcagtattagggtg---------gtca--ggaaatgcctccc-tggggaggtgat
                  Mouse lemur  --ggaggtaagggaagcagtgttaggatg---------gtca--gtgaaggcctccc-tagggaggtgac
            Coquerel's sifaka  --gggggtaagggaaacagtgttagggtg---------gtca--gggagggcctccc-tagggaggtgac
                     Bushbaby  tcttccctcagggagacaggattagggtggccagggcagtca--gggaaggcctccc-caggg-ggtggc
                          Dog  ------------------------gggcg---------gtca--ggcggggccttcc-cggggaggtggc
                    Armadillo  --ggtggtgaaggaggcagtgttagagagg--------gtcatcacaaacgccatcc-tgggtgggtagc
              Sclater's lemur  ======================================================================
                  Black lemur  ======================================================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                        Mouse  ======================================================================

                        Human  -attagagctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagaaggatgtttttt-
                        Chimp  -attagagctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagaaggatgtttttt-
                       Bonobo  -attagagctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagaaggatgtttttt-
                      Gorilla  -attagagctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagaaggatgtttttt-
                    Orangutan  -attagagctgagacctacatgatgagaaggtgctggcgctgtgatgatttgggagaaggatgtttttt-
                       Gibbon  -attagggctgagacctacatgatgagaaggtgctggcactgtgatgatttgggagaaggacgtttttt-
                       Rhesus  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
          Crab-eating macaque  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
           Pig-tailed macaque  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
               Sooty mangabey  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
                       Baboon  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
                 Green monkey  -actggggctgagacctacaccatgagaaggtgctggcactgtggtgatttgggagagggatgttttct-
                        Drill  -actggggctgagacctacaccatgagaaggtgctggcactgtggttatttgggagagggatgttttct-
              Angolan colobus  -actggggctgagacctacaccatgagaaggtgctggcgctgtggtgatttgggagagggatgttttct-
     Golden snub-nosed monkey  -actggggctgagacctacaccatgagaaggtgctggcgctgtggtgatttgggagagggatgttttct-
      Black snub-nosed monkey  -actggggctgagacctacaccatgagaaggtgctggcgctgtggtgatttgggagagggatgttttct-
                     Marmoset  -attggggctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagatggatgtttttt-
              Squirrel monkey  -attgggcctgagacctacatgatgagaaggtgctggtgttg---tgatttaggagaaggatgcttttt-
          White-faced sapajou  -attggggctgagacctacgtgatgagaaggtgctggtgctgtgatggtttgggagaaggatgtttttt-
            Ma's night monkey  -gttggggctgagacctacatgatgagaaggtgctggtgctgtgatgatttgggagaaggat-tttttt-
                  Mouse lemur  -attggagctgagacctaaattgtgagaaggagctggctctgtgatgattagagaggaaaatattttttt
            Coquerel's sifaka  -attggagctgagacctaaattgtgagaaggagctggttctgtgatgatctgaaagaacaatgttttttt
                     Bushbaby  -attggagctgagacctacatggtaagaaggtgctagctctgtgatgacttggaa---------------
                          Dog  tattctcagggagaccca-acagcgagggggcgctggccctgtgatgacctgagagaagaaaggtttct-
                    Armadillo  -cttggtgctgagaccaaaatgacaggaaggaactggctctctgaatctcttggagaagagtgattt-t-
              Sclater's lemur  ======================================================================
                  Black lemur  ======================================================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                        Mouse  ======================================================================

                        Human  c-aggcacgaacactagcaagtgtaaaggctcaaaggctggaataagcatgttttaaggaacagcaaagc
                        Chimp  c-aggcacgaacactagcaagtgtaaaggctcaaaggctggaataagcatgttttaaggaacagcaaagc
                       Bonobo  c-aggcacgaacactagcaagtgtaaaggctcaaaggctggaataagcatgttttaaggaacagcaaagc
                      Gorilla  c-aggcacgaacactagcaagcgtaaagtctcaaaggctggattaagcgtgttttaaggaacagcaaagc
                    Orangutan  c-aggcacgagcactagccagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                       Gibbon  c-aggcacgagcagtagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                       Rhesus  c-aggcacgagcactagcaagtgtaaaggctgaaaggctggaataagcatg-tttaaggaacagcaaagc
          Crab-eating macaque  c-aggcacgagcactagcaagtgtaaaggctgaaaggctggaataagcatg-tttaaggaacagcaaagc
           Pig-tailed macaque  c-aggcacgagcactagcaagtgtaaaggcttaaaggctggaataagcatg-tttaaggaacagcaaagc
               Sooty mangabey  c-aggcacgagcaccagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                       Baboon  c-aggcacgagcactagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                 Green monkey  c-aggcacgagcactagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                        Drill  c-aggcacgagcaccagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
              Angolan colobus  c-aggcacgagcactagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
     Golden snub-nosed monkey  c-agacacgagcactagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
      Black snub-nosed monkey  c-aggcacgagcactagcaagtgtaaaggctcaaaggctggaataagcatg-tttaaggaacagcaaagc
                     Marmoset  tcaggcacaagcactagcaagtgtaaaggcctaaaggctggaatacccatg-tttaaggaacagaaaagc
              Squirrel monkey  t-aggcacgagcactagcaaatgtaaaagcttaaaggctggaatacccatg-tttaaggaacagaaaagc
          White-faced sapajou  tcaggcatgagcactagcaagtgtgaaggcttaaaggctggaatacccatt-tttaaggaacagaaaagc
            Ma's night monkey  tcaggcatgagcactagcgagtgtaaaggcttaaaggctggaatacccatg-tttaaggaacagaaaagc
                  Mouse lemur  c-aggcagcagtactagcaagcctaaaggcccaaaggctgaaataagcata-ttc-ggaaacagaaaagt
            Coquerel's sifaka  c-aggcaggagtactagcaagcctaaaggctcagaggctgaaataagcata-ttt-gggaacagaaaagt
                     Bushbaby  c-aagcatgaggactagcaaacctaaaggcccaaaggctggaa-aagtaca-ttt-gggaacagagaagc
                          Dog  c-agg--ggggaagtagcaagtgtgaaaggtcaaaggctggaaagagcgct-tttgag--accgaaaggg
                    Armadillo  c-aggcagcagcaataacaagggtaaaggcctagaggctgaaatga-catg-ttcaatgaacagaaaagc
              Sclater's lemur  ======================================================================
                  Black lemur  ======================================================================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ======================================================================
                        Mouse  ======================================================================

                        Human  agccgctgtactggctgaagggtg
                        Chimp  agccgctgtactggctgaagggtg
                       Bonobo  agccgctgtactggctgaagggtg
                      Gorilla  agccgctgtactggctgaagggtg
                    Orangutan  agctgctgtactggctgaagggta
                       Gibbon  agccactgtactggctgaagggtg
                       Rhesus  agcggctgtactggctgtagggtg
          Crab-eating macaque  agcggctgtactggctgtagggtg
           Pig-tailed macaque  agcggctgtactggctgtagggtg
               Sooty mangabey  agcggctgtactggctgtagggtg
                       Baboon  agcggctgtactggctgtagggtg
                 Green monkey  agcggctgtactggctgtagggtg
                        Drill  agcggctgtactggctgtagggtg
              Angolan colobus  agcggctgtactggctgtagggtg
     Golden snub-nosed monkey  agcggctgtactggctgtagggtg
      Black snub-nosed monkey  agcggctgtactggctgtagggtg
                     Marmoset  agccactgccctggccaaagggta
              Squirrel monkey  agccactgccctggccaaagggta
          White-faced sapajou  agccactgccctggccaaagggta
            Ma's night monkey  agccactgccctggccaaagggta
                  Mouse lemur  agc-----cactggatacggggta
            Coquerel's sifaka  agc-----cactggatgcagggta
                     Bushbaby  agc-----cccttgttgaatgctg
                          Dog  agc-----ccctggctagaggcag
                    Armadillo  agc-----tgctagcagaaaggt-
              Sclater's lemur  ========================
                  Black lemur  ========================
             Proboscis monkey  NNNNNNNNNNNNNNNNNNNNNNNN
                      Tarsier  ========================
                        Mouse  ========================

Alignment block 50 of 323 in window, 57799326 - 57799432, 107 bps 
B D                     Human  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D                     Chimp  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D                    Bonobo  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D                   Gorilla  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agcttggcaggggccagatt
B D                 Orangutan  gtgagt-g----atgagggtattggta----catgaaatgaaatcagag-agctaggcaggggccagatt
B D                    Gibbon  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D                    Rhesus  gtgaat-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D       Crab-eating macaque  gtgaat-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
           Pig-tailed macaque  gtgaat-g----atgagggtattggtatatgtatgaaatgaaatcagag-agctaggcaggggccagatt
               Sooty mangabey  gtgaat-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
                       Baboon  gtgaat-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D              Green monkey  gtgagt-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
                        Drill  gtgaat-g----atgagggtattggta----tatgaaatgaaatcagag-agctaggcaggggccagatt
B D          Proboscis monkey  gtgagt-g----atgagggtattggta----tatgagatgaaatcagag-agctaggcagggtccagatt
              Angolan colobus  gtgagt-g----atgagggtattggta----tatgagttgaaatcagag-agctaggaaggggccagatt
B D  Golden snub-nosed monkey  gtgagt-g----atgagggtattggta----tatgagatgaaatcagag-agctaggcagggtccagatt
      Black snub-nosed monkey  gtgagt-g----atgagggtattggta----tatgagatgaaatcagag-agctaggcagggtccagatt
B D                  Marmoset  gtaagt-g----aagagagtgttggta----tatgaaatgcagtcagag-aggtagg------ccagatt
B D           Squirrel monkey  gtaagt-gaagaaagagggtgttggta----tatgaaatgcagtcagag-aggtagg------ccagatt
          White-faced sapajou  gtaagt-g----aagagggtgttggta----tatgaaatgcaatcagag-aggtagg------ccagatt
            Ma's night monkey  gtaagt-g----aagagggtgttggta----tatgaaatgcagtcagag-aggtagg------ccagatt
                  Mouse lemur  gtaagtga----aggagggtagtggta----catgagacaaaattggag-aggtgggcaggggccagatt
            Coquerel's sifaka  gtaagt-a----aagagggtagtggta----tatgagacaaaattggaa-aggtaggcaggggccagatt
B D                  Bushbaby  gtaagt-g----aagagagcagaggtg----tatgagacagcattggag-aggtaggcaggggccaggtt
B D                       Dog  cagaat-g----aagagggcagcgggg----taggagatggagtcggg-----tgagcgtgggccaggtt
B D                 Armadillo  tcaagt-g----gagaga-------ca----tatgagatgaaattggaacaggagggccagagccagatt
             Sclater's lemur  ======================================================================
                 Black lemur  ======================================================================
B D                   Tarsier  ======================================================================
B D                     Mouse  ======================================================================

                        Human  gt---------------------ataggccttcacattc--ttt--------------------ttttaa
                        Chimp  gt---------------------ataggccttcacattc--ttt--------------------ttttaa
                       Bonobo  gt---------------------ataggccttcacattc--ttt--------------------ttttaa
                      Gorilla  gt---------------------gtaggccttcacattc--ttt--------------------tttaaa
                    Orangutan  gt---------------------ataggccttcacattc--ttt--------------------ttttaa
                       Gibbon  gt---------------------ataggccttcacattc--ttt--------------------ttttaa
                       Rhesus  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
          Crab-eating macaque  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
           Pig-tailed macaque  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
               Sooty mangabey  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
                       Baboon  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
                 Green monkey  gt---------------------ataggccttcacgttc--ttt--------------------tttaaa
                        Drill  gt---------------------atcggccttcacattc--ttt--------------------tttaaa
             Proboscis monkey  gt---------------------ataggccttcacattc--ttt--------------------ttaaaa
              Angolan colobus  gt---------------------ataggccttcacattc--ttt--------------------ttaaaa
     Golden snub-nosed monkey  gt---------------------ataggccttcacattc--ttt--------------------ttaaaa
      Black snub-nosed monkey  gt---------------------ataggccttcacattc--ttt--------------------ttaaaa
                     Marmoset  gt---------------------ataggccttcagattc--ttt--------------------ttttaa
              Squirrel monkey  gt---------------------atcggccctcagattc--ttt--------------------tttaaa
          White-faced sapajou  gt---------------------ataggccttcggcttc--ttt--------------------ttttaa
            Ma's night monkey  gt---------------------ataggccttcagattc--ttt--------------------ttttaa
                  Mouse lemur  gt---------------------gtaggctttctgattc--ttt--------------------ttttaa
            Coquerel's sifaka  at---------------------gtaggctttctgattcttttt--------------------ttttaa
                     Bushbaby  gt---------------------gtaggctttctggttc---tc--------------------attaaa
                          Dog  gtgaagagccacggcggccacagaaaggattctggattc--ttc--------------------tgt---
                    Armadillo  gt---------------------ggagggcctcggaggc--catggaagggacagtatatttaattctaa
              Sclater's lemur  ======================================================================
                  Black lemur  ======================================================================
                      Tarsier  ======================================================================
                        Mouse  ======================================================================

                        Human  atgtagtgggaagctattcc
                        Chimp  atgtagtgggaagctattcc
                       Bonobo  atgtagtgggaagctattcc
                      Gorilla  atgtagtgggaagctattcc
                    Orangutan  atgtagtgggaagctatttg
                       Gibbon  atgtagtgggaagctattcg
                       Rhesus  atgtagtgggaagctattcg
          Crab-eating macaque  atgtagtgggaagctattcg
           Pig-tailed macaque  atgtagtgggaagctattcg
               Sooty mangabey  atgtagtgggaagctattcg
                       Baboon  atgtagtgggaagctattcg
                 Green monkey  atgtagtgggaagctattcg
                        Drill  atgtagtgggaagctattcg
             Proboscis monkey  atgtagtgggaagctattcg
              Angolan colobus  atgtagtgggaagctattcg
     Golden snub-nosed monkey  atgtagtgggaagctattcg
      Black snub-nosed monkey  atgtagtgggaagctattcg
                     Marmoset  gtgtagtggcaagctatttg
              Squirrel monkey  gtgtagcgggaagctatttg
          White-faced sapajou  gtgtagtgggaagctatttg
            Ma's night monkey  gtgtagtgagaagctatttg
                  Mouse lemur  attcagtgggacgccatctg
            Coquerel's sifaka  gtgcagtgggaagccatttg
                     Bushbaby  gtacagtgggaagccatttg
                          Dog  -tgccttgggaagccatctg
                    Armadillo  gggcagtgggaagccattgg
              Sclater's lemur  ====================
                  Black lemur  ====================
                      Tarsier  ====================
                        Mouse  ====================

Alignment block 51 of 323 in window, 57799433 - 57799465, 33 bps 
B D                     Human  ag------------------------gtgttttaaacagggccgtgccatatatttt
B D                     Chimp  ag------------------------gtgttttaaacagggccgtgccatatatttt
B D                    Bonobo  ag------------------------gtgttttaaacagggccgtgccatatatttt
B D                   Gorilla  ag------------------------gtgttttaaacagggccgtgccatatatttt
B D                 Orangutan  ag------------------------gtgttttaaacagggctgtgccatatatttt
B D                    Gibbon  ag------------------------gtgttttaaacagggcagtgccatatatttt
B D                    Rhesus  ag------------------------gtgttttaaacagggcagtgccatatgtttt
B D       Crab-eating macaque  ag------------------------gtgttttaaacagggcagtgccatatgtttt
           Pig-tailed macaque  ag------------------------gtgttttaaacagggcagtgccatatgtttt
               Sooty mangabey  ag------------------------gtgttttaaacagggcagtgccatatgtttt
                       Baboon  ag------------------------gtgttttaaacagggcagtgccatatgtttt
B D              Green monkey  ag------------------------gtgttttaaacagggcagtgccatatgtttt
                        Drill  ag------------------------gtgttttaaacagggcagtgccatatgtttt
B D          Proboscis monkey  ag------------------------gtgttttaaacagggcagtgccatatgtttt
              Angolan colobus  ag------------------------gtgtattaaacagggcagtgccatatgtttg
B D  Golden snub-nosed monkey  ag------------------------gtgttttaaacagggcagtgccatatgtttt
      Black snub-nosed monkey  ag------------------------gtgttttaaacagggcagtgccatatgtttt
B D                  Marmoset  ag------------------------gtgttttaaacaggacagtgccatatgtttt
B D           Squirrel monkey  ag------------------------gtgttttaaacaggacagtgccatatgtttt
          White-faced sapajou  aggtgttttaaacaggacagtgccatgtgttttaaacaggacagtgccatatgtttt
            Ma's night monkey  ag------------------------gtgttttaaacaggacagtgccatatgtttt
                  Mouse lemur  ag------------------------gtgttttaaacaggacagtgccatctgtttt
            Coquerel's sifaka  ag------------------------gtcttttaaatgggacagtgccatctgtttt
                  Black lemur  ag------------------------gtgttttaaacaggacagtgccctctgtttt
              Sclater's lemur  ag------------------------gtgttttaaacaggacagtgccctctgtttt
B D                  Bushbaby  at------------------------atgttttaaacaggacagtgctatctgtttt
B D                       Dog  ag------------------------gtgttctacaca--acagcgttgtctgttat
B D                 Armadillo  gg------------------------gtgttttaa--------gtgtcatctgtttt
B D                   Tarsier  =========================================================
B D                     Mouse  =========================================================

Inserts between block 51 and 52 in window
B D                 Marmoset 1bp
B D          Squirrel monkey 1bp
         White-faced sapajou 1bp
           Ma's night monkey 1bp
                 Mouse lemur 1bp
           Coquerel's sifaka 1bp
                 Black lemur 1bp
             Sclater's lemur 1bp
B D                 Bushbaby 1bp
B D                      Dog 1bp
B D                Armadillo 1bp

Alignment block 52 of 323 in window, 57799466 - 57799695, 230 bps 
B D                     Human  aaagatctctttggctgttgtgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                     Chimp  aaagatctctttggctgttgtgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                    Bonobo  aaagatctctttggctgttgtgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                   Gorilla  aaagatctctttggctgttgtgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                 Orangutan  aaagatctctttggctgttgtgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                    Gibbon  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaagccagttggattg
B D                    Rhesus  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D       Crab-eating macaque  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
           Pig-tailed macaque  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
               Sooty mangabey  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaatcagttggattg
                       Baboon  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D              Green monkey  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
                        Drill  aaagatccctttggctattgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D          Proboscis monkey  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
              Angolan colobus  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D  Golden snub-nosed monkey  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
      Black snub-nosed monkey  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggattg
B D                  Marmoset  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggactg
B D           Squirrel monkey  aaagatccctttggctgttgcgtgg--ggaacggattataggaaca--gg--tggaaaccagttggactg
          White-faced sapajou  aaagatccctttggctgttgcgtgg--ggaacggattgtaggaaca--gg--tggaaaccagttggactg
            Ma's night monkey  aaagatccctttggctgttgcgtgg--gaaacggattgtaggaaca--gg--tggaaaacagttggaccg
B D                   Tarsier  aaagatccctttggctgctgtgtgg--agaacagattgtaggactg--gg--tggaaaccatttgaatcc
                  Mouse lemur  aaagatccctttggccgttgtgtgg--ggaatggattgtagggata--ggcttggaaacaagtttgattg
            Coquerel's sifaka  aaagatccctttggctgttgtgtgg--ggaatggattgtagggaca--ggcttggaaacgagttggatca
                  Black lemur  aaagatccctttggctgttgtgtgg--ggaatggattgtagggaca--ggcttggaaacgagttggatcg
              Sclater's lemur  aaagatccctttggctgttgtgtgg--ggaatggattgtagggaca--ggcttggaaacgagttggatcg
B D                  Bushbaby  aaatatccccttggctgttgtgtgg--ggaatggattgtagggaca--ggcatggcagccagttggatca
B D                       Dog  aaaaagcctattgatggttac-tgg--cgagggggcagt---------gg--gggatac--------ttg
B D                 Armadillo  aaagatccttttggctgttgtgtggatgaaatggatttcaggaacaccgg--taggaa------ggactg
B D                     Mouse  ======================================================================

                        Human  tagtaagtagtccatgatag-ctggactagac-tagtagcagagaaatggaagaggagtgaacagaagct
                        Chimp  tagtaagtagtccatgatag-ctggactagat-tagtagcagagagatgg-agaggagtgaacagaagct
                       Bonobo  tagtaagtagtccatgatag-ctggactagat-tagtagcagagagatgg-agaggagtgaacagaagct
                      Gorilla  tagtaagtagtccatgatag-ctggactagac-tagtagcagagagatgg-agaggagtgaacagaagct
                    Orangutan  tagtaagtagtccatgatag-ctggaccagac-tagtagcagagagatgg-agaggagtgaacagaagct
                       Gibbon  tagtaagtagtccatgataa-ctggactagac-tagtagcagagagatgg-agaggagtgaacagaagct
                       Rhesus  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
          Crab-eating macaque  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
           Pig-tailed macaque  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
               Sooty mangabey  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
                       Baboon  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
                 Green monkey  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
                        Drill  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
             Proboscis monkey  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
              Angolan colobus  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
     Golden snub-nosed monkey  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
      Black snub-nosed monkey  tagtatgtagtccaagatgg-ctgcactagac-tagtagcagagagatgg-agagcagtggacagaagct
                     Marmoset  tagtaagtagtccatgatag-ctggactagac-tagtagcagagagatgg------aatggacagaagct
              Squirrel monkey  tagtaagtagtccatgatag-ctggactagac-tagtagcagagagatgg------agtggacagaagct
          White-faced sapajou  tagtaagtagtccatgatag-ctggaccagac-tagcagcagagaga--g------agtggacagaagct
            Ma's night monkey  tagtaagtagtccatgatag-ctggactagac-tagtagcagagagatgg------agtggacagaagct
                      Tarsier  ta----atggtccatgatga-ctggactagac-tagcagcagagaggtgg-aaaggagtggacagaagct
                  Mouse lemur  cagt----agtccatgatgg-ctggactagac-tggcagcagagagatgg-agaggagtggatagaggcc
            Coquerel's sifaka  cagt----agtccatgatag-ctgaactagac-tggcagcagagagatgg-agaggagtgaacagaggcc
                  Black lemur  cagta---agtccatgatgg-ctggactagac-tggcagcagagagatgg-agaggagtggacagagacc
              Sclater's lemur  cagta---agtccatgatgg-ctggactagac-tggcagcagagagatgg-agaggagtggacagagacc
                     Bushbaby  cagt----agtctgtgatgg-ttggaccagacttgacagcagcgagatgg-agaggagtggacagagg-c
                          Dog  taat----agtccaggattg-ct----------gggcagcggagggacgg-ggaggagtggacagagg--
                    Armadillo  tcacacttaatctgtggtggcctgagctaggc-cggcagcagtgaaatgg-agaagagggggcagagtcc
                        Mouse  ======================================================================

                        Human  agctgat---agac---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg--gtt
                        Chimp  agctgat---agac---tgatgtaggtgg----agaga-----aaataatcaagaaagaaccctg--gtt
                       Bonobo  agctgat---agac---tgatgtaggtgg----agaga-----aaataatcaagaaagaaccctg--gtg
                      Gorilla  agctgat---agac---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg--gtt
                    Orangutan  agctggt---agac---tgatgtaggtgg----agaaa-----aaagaatcaagaaagaaccctgttttt
                       Gibbon  agctgat---aaac---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg---tt
                       Rhesus  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctc---tt
          Crab-eating macaque  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctc---tt
           Pig-tailed macaque  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctc---tt
               Sooty mangabey  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctg---tt
                       Baboon  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctg---tt
                 Green monkey  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctg---tt
                        Drill  agctgat---agat---tgatgtaggtga----agaga-----aaagaatcaagaaagaaccctg---tt
             Proboscis monkey  agctgat---agat---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg---tt
              Angolan colobus  agctgat---agat---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg---tt
     Golden snub-nosed monkey  agctgat---agac---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg---tt
      Black snub-nosed monkey  agctgat---agac---tgatgtaggtgg----agaga-----aaagaatcaagaaagaaccctg---tt
                     Marmoset  agctgat---agat---ttatgtaggtgg----agaga-----aaag----aagaaagaactctg----t
              Squirrel monkey  agctgat---agatatatgatgtaggtgg----agaga-----aaag----aagaaagaactctg----t
          White-faced sapajou  agctgat---agac---tgatgtaggtgg----agaga-----aaag----aagaaagaactctg----c
            Ma's night monkey  agctgat---agat---tgatgtaggtgg----agaga-----aaag----aagaaagaactct------
                      Tarsier  agctggtgggaggt---tgatgtgggaggtaaaaaaaa-----aaagaaaacaaagggagccctg----g
                  Mouse lemur  agctggt---agat---tgacgtaggagg----tgagaaa---aaagaatcaagaaggatccctg----g
            Coquerel's sifaka  agctagt---agat---tgatgtaggagg----tgcgaca---aaagaatcaagaaggagccatg----g
                  Black lemur  agatggt---agat---tgatagaggagg----tgagaca---aaagaatcaagaaggagccctg----g
              Sclater's lemur  aggtggt---agat---tgatagaggagg----tgagaca---aaagaatcaagaaggagccctg----g
                     Bushbaby  agctggt---gggt---tgatgcagga-g----tgagac----aaggaatcaagagggagcccag----g
                          Dog  --ctgac---ggac---ggatgtgggagg----aggag----------------------tcctg----g
                    Armadillo  agctgat---gggt---tgatgtgggagg----tgagaaagagaaagaatcaagaattagccatg----g
                        Mouse  ======================================================================

                        Human  tttttt--ggtttgagttcctaggtagctcagatgtccattgagcgg
                        Chimp  tttttt--ggtttgagctcctggttagctcagatgtccattgagcgg
                       Bonobo  tttttt--ggtttgagctcctggttagctcagatgtccattgagcgg
                      Gorilla  tttttt--ggtttgagctcctgggtagctcagatgtccattgagcgg
                    Orangutan  tttttt--ggtttgagctcctgggtagctcagatgtccattgagcgg
                       Gibbon  tttttt--ggtttgagctcctgggtagctcagatgtccattgagcgg
                       Rhesus  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcag
          Crab-eating macaque  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcag
           Pig-tailed macaque  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcag
               Sooty mangabey  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcag
                       Baboon  tctttt--ggtttgagctcctgagtagctcagatgtccactgagcag
                 Green monkey  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcgg
                        Drill  tctttt--ggtttgagctcctgagtagctcagatgtccattgagcag
             Proboscis monkey  tttttttggttttgagctcgtgggtagctcagatgtccattgagcgg
              Angolan colobus  tttttt--ggtttgagctcctgggtagctcagatgtccattgagcgg
     Golden snub-nosed monkey  ttttttt-ggtttgagctcctgggtagctcagatgtccattgagtgg
      Black snub-nosed monkey  ttttttt-ggtttgagctcctgggtagctcagatgtccattgagcgg
                     Marmoset  tttttc--ggcttgagctcctgggtagctcaggtgtccattgagcac
              Squirrel monkey  tttttt--ggcttgagctcctggatagctcaggtgtccattgggcac
          White-faced sapajou  tttttc--ggcttgagcacctgggtagctcaggtgtcctttgggcac
            Ma's night monkey  tttttc--ggcttgagctcctgggtagctcaggtgtccattgagcac
                      Tarsier  gttttg--gggttgaacta----------cagatgtccactgagggc
                  Mouse lemur  gttttt--gggttgagccactgggtagcttaaatgtccatcgagtgc
            Coquerel's sifaka  gttttt--ggtttgagccactgggtagctcaaatgtccatccagtgc
                  Black lemur  gttttt--ggtttgagccactgggtagctcaaatgtccatcgagtgc
              Sclater's lemur  gttttt--ggtttgagccactgggtagctcaaatgtccatcgagtgc
                     Bushbaby  g-tttt--ggtttgagctactgggttgcgcagatgtccatccagtgc
                          Dog  gctttt--gtctggagctactgggaagctcagaggtccgctgagggg
                    Armadillo  attttt--ggcttcagctcctgggcagctcaaatgtttgttgagtgc
                        Mouse  ===============================================

Inserts between block 52 and 53 in window
B D                      Dog 1bp

Alignment block 53 of 323 in window, 57799696 - 57800019, 324 bps 
B D                     Human  ctacaatgtgccg-----gagctgtcctaggccatttgctgagctgagttttttactcacgg---agagc
B D                     Chimp  ctacaatgtgccg-----gaactgtcctaggccatttgctgagctgagttttttactcacgg---agagc
B D                    Bonobo  ctacaatgtgccg-----gaactgtcctaggccatttgctgagctgagttttttactcacgg---agagc
B D                   Gorilla  ctacaatgtgccg-----caactgtcctaggccatttgctgagctgag-tttttactcacgg---agagc
B D                 Orangutan  ctacaacgtgccg-----gaactgtcctaggccatttgctgagctgatttttttactcacgg---agagc
B D                    Gibbon  ctacaacgtgccg-----gaactgtcctaggccatttgctgacctgagttttttactcacag---agagc
B D                    Rhesus  ctacagcatgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
B D       Crab-eating macaque  ctacagcatgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
           Pig-tailed macaque  ctacagcgtgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
               Sooty mangabey  ctacagcgtgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
                       Baboon  ctacagcgtgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
B D              Green monkey  ctacagcgtgccatgccagaactgtcctaggcca-----------------tttactcatgg---agagc
                        Drill  ctacagcgtgccgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
B D          Proboscis monkey  ctatagcgtgctgtgccagaactgtcctaggcca-----------------ttcactcatgg---agagc
              Angolan colobus  ctatagcgtgctgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
B D  Golden snub-nosed monkey  ctatagcatgctgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
      Black snub-nosed monkey  ctatagcatgctgtgccagaactgtcctaggcca-----------------tttactcatgg---agagc
B D                  Marmoset  ctataacgtgctg-----gaactgtcctaggccatttactgagatgagtgctttactcacag---aaagc
B D           Squirrel monkey  ctacaacgtgctg-----ggactgtcctaggccatttactgagatgagtgctttactcacag---aaagc
          White-faced sapajou  ctacaacgtgcta-----gaactgtcctaggccatttactgagatgagtgctttactcacag---aaagc
            Ma's night monkey  ctacaacgtgttg-----gaactgtcctaggccacttactgagacgagtgctctactcacag---aaagc
B D                   Tarsier  ctcccatgtccca-----gaactgtcttaggccatctgctgacatgggtgcttcactcacggagaagagc
                  Mouse lemur  ctatgatgtacct-----gaactgtcctaggccatttattgaggtgggtgcttta-tcatag---agagc
            Coquerel's sifaka  ctatgatgtacct-----gaactgtcctaggccatttattgagatgggtgcttta-tcacgg---agagc
                  Black lemur  ctgtgatgcacct-----gaactgtcctaggccatttattgagatgggtgcttta-tcacgg---aaagc
              Sclater's lemur  ctgtgatgcacct-----gaactgtcctaggccatttattgagatgggtgcttta-tcacgg---aaagc
B D                  Bushbaby  ctgtgacatacct-----g-attatcctaggccatttactaaaaagggcac-tta-tcacag---agagc
B D                     Mouse  ctgcagcatgttg-----gatctgctccaagccttttcccaagctccgagcttaggctatt----cgagc
B D                       Dog  ctacggtgtccca-----gagctgtcctaggccgcgtac------aggtgccttgctcatgg---agcgc
B D                 Armadillo  ctaccgtgtggca-----gaactgtcctaggttc-ttactgagatgggtgctttactcctgg---agagt

                        Human  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                        Chimp  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                       Bonobo  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                      Gorilla  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                    Orangutan  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                       Gibbon  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttagca
                       Rhesus  tccacttccaacag----acag-tttctt-----------------cagtcactcacctcctttttggca
          Crab-eating macaque  tccacttccaacag----acag-tttctt-----------------cagtcactcacctcctttttggca
           Pig-tailed macaque  tccacttccaacag----acagttttctt-----------------cagtcactcacctcctttttggca
               Sooty mangabey  tccacttccaacag----acag-tctctt-----------------cagtcactcacctcctttttggca
                       Baboon  tccacttccaacag----acag-tttctt-----------------cagtcactcacctcctttttggca
                 Green monkey  tccacttccaacaga-c-acag-tttctt-----------------cagtcactcacctcctttttggca
                        Drill  tccacttccaacag----acag-tttctt-----------------cagtcactcacctcctttttggca
             Proboscis monkey  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
              Angolan colobus  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
     Golden snub-nosed monkey  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
      Black snub-nosed monkey  tccacttccaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggca
                     Marmoset  tctgcttacaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggcg
              Squirrel monkey  tctgcttacaacaga-c-acag-ttcctt-----------------cagttactcacctcctttttggcg
          White-faced sapajou  tctacttaaaacaga-c-acag-ttcctt-----------------cagccactcacctcctttttggcg
            Ma's night monkey  tctacttacaacag----acag-tttctt-----------------cagccactcacctcctttttggcg
                      Tarsier  tccactt--aacaac-caatag-ctcctt-----------------cagccacgcacctcctttttggca
                  Mouse lemur  tccgcttaccacaga-c-acag-ttcctt-----------------tagccactaacctcctttttagca
            Coquerel's sifaka  tccacttaccacaga-t-acgg-tacctt-----------------cagccactcacctcctttttagca
                  Black lemur  tccacttaccacagatt-acag-ttcctt-----------------cagccactcacctcctttttagca
              Sclater's lemur  tccacttaccacagatt-acag-ttcctt-----------------cagccactcacctcctttttagca
                     Bushbaby  cccactt------------------------------------------------acctcctttttggca
                        Mouse  tccgc-----acatg-c-gccc-tcccctcccctcccacgcacgcacaaccactcacctcctttttggcg
                          Dog  gtcactctcct-----g-acag-tccctt-----------------tagccactcacctcctttttggca
                    Armadillo  gccacttacatcaga-c-acag-ttcctt-----------------caaacactcacctccttcttggca

                        Human  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
                        Chimp  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
                       Bonobo  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
                      Gorilla  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
                    Orangutan  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
                       Gibbon  gggtctacatcctcaggcagctcctgattctggtttttcagcagaactgctatagggtaatattttggct
                       Rhesus  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
          Crab-eating macaque  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
           Pig-tailed macaque  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
               Sooty mangabey  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttaact
                       Baboon  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
                 Green monkey  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
                        Drill  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
             Proboscis monkey  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
              Angolan colobus  gggtttacatcctcaggtagctcctgattctggtttttcaacagaactgctatagggtaatattttgact
     Golden snub-nosed monkey  gggtttacatcctcaggtagctcctgattctggtttttcagcagaactgctatagggtaatattttgact
      Black snub-nosed monkey  gggtttacatcctcaggtagctcctgattctggtttttcagcagaactgctatagggtaatattttgact
                     Marmoset  gggtttacgtcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
              Squirrel monkey  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
          White-faced sapajou  gggtttacatcctcaggcagctcctgattctggtttttcaacagaactgctatagggtaatattttggct
            Ma's night monkey  gggtttacatcctcaggcagctcctgattctggtttttcatcagaactgctatagggtaatattttggct
                      Tarsier  gggttcacgtcctcgggcagctcttgattctggtttttcaatagaacttctatgggataatattttgact
                  Mouse lemur  gggttcacatcctcaggcagctcctgattctggtttttcagcagaatttctatggggtaatattttgact
            Coquerel's sifaka  gggttcacatcctcaggcagctcctgattctggtttttcagcagaacttctatggggtaatattttggct
                  Black lemur  gggttcacatcctcaggcagctcctgactctggtttttcagcagaacttctatggggtaatattttggct
              Sclater's lemur  gggttcacatcctcaggcagctcctgactctggtttttcagcagaacttctatggggtaatattttggct
                     Bushbaby  gggttcacatcctcaggcagctcctgattctggtttttcaacagaacttctatggggtaatattttggct
                        Mouse  gggtccacatcctcaggcagctcctggttctgacctttcagcagaacttccaccgggtagtactttggct
                          Dog  gggttcacgtcctcaggcagctcctgattctggtttttcagcagaacttctatagggtaatacttcagct
                    Armadillo  gggttcacatcctcaggcagctcctgaccctgatttttcaaaagcacttctagagggtaatattttggct

                        Human  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatgtagg
                        Chimp  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatgtagg
                       Bonobo  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatgtagg
                      Gorilla  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatgtagg
                    Orangutan  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatatagg
                       Gibbon  cactgtcattagaattcagggagagggttgcattcttcatgtcctaggtaagataag-----aatgtagg
                       Rhesus  cactgtcaatagaattcacggagagggttgcattcttcatgtcctaggtaagataagat---aatgtagg
          Crab-eating macaque  cactgtcaatagaattcacggagagggttgcattcttcatgtcctaggtaagataagat---aatgtagg
           Pig-tailed macaque  cactgtcaatagaattcacggagagggttgcattcttcatgtcctaggtaagataagataagaatatagg
               Sooty mangabey  cactgtcagtagaattcacggagagggttgcattcttcatgtcctaggtaagataagataagaatgtagg
                       Baboon  cactgtcaatagaattcacggagagggttgcattcttcatgtcctaggtaagataagataagaatgtagg
                 Green monkey  cactgtcaatagaattcacggagagggttgcattcttcatgtcctagg-----taagataagaatgtagg
                        Drill  cactgtcagtagaattcacggagagggttgcattcttcatgtcctaggtaagataagataagaatgtagg
             Proboscis monkey  cactgtcattagaattcacagagaaggttgcattcttcatgtcctaggtaagataagataagaatgtagg
              Angolan colobus  cactgtcattagaattcacagagaaggttgcattcttcatgtcctaggtaagataagataagaatgtagg
     Golden snub-nosed monkey  cactgtcattagaattcacagagaaggttgcattcttcatgtcctacgtaagataagataagaatgtagg
      Black snub-nosed monkey  cactgtcattagaattcacagagaaggttgcattcttcatgtcctaggtaagataagataagaatgtagg
                     Marmoset  caccatcattagaattcaggaagagggttgcattcttcatgtcctaggtaagataag-----aatgtagt
              Squirrel monkey  caccatcattagaattcagggagagagttgcattcttcatgtcctaggtaagataag-----aatgtagg
          White-faced sapajou  caccgtcattagaattcagggagagggttgcattattcatgtcctaggtgagataag-----aatgtagg
            Ma's night monkey  cactgtcattagaattcagggagagggtttcattcttcatatcctaggtaagataag-----aatgtagg
                      Tarsier  cactgttatgagaattcagggagagggttgcgttcttcatgtcctaggc-agataag-----aatgtaga
                  Mouse lemur  cactgtc---agaattcagggagagggtggtgttcttcatgtcctaggtaggataagataagaatataaa
            Coquerel's sifaka  cactgtc---agaattcagggagagggtggtggtcttcatgtcctaggtag-----gataagaatataaa
                  Black lemur  ccctgtc---agaattcagggagagggtcgtgttcttcatgtcctaggtaggataagataagaatataaa
              Sclater's lemur  ccctgtc---agaattcagggagagggtcgtgttcttcatgtcctaggtaggataagataagaatataaa
                     Bushbaby  cactgtc---aggattcagggagagggtggcattcttcatgtcctaggttggagaagatcagaaggtagg
                        Mouse  caccgtcactaggattcaggtaaagtgttgcgttcttcatgtcctgtgtaagagagg-----aacacaga
                          Dog  c---------agaattcagggagagggttgcattcctcatgtcctacgtaagataag-----aatgtaga
                    Armadillo  cactgttgtcaaaagtgagggagagggatgcattcctcatgtcctaggcaagatgagaccagaatgtaga

                        Human  caca-g---g-gaaaagactcctcagtgtc-t-gtgtggttacagttc---tgaatgtgta--taatatt
                        Chimp  caca-g---g-gaaaagactcctcagtgtc-t-gtgtggttacagttc---tgaatgtgta--taatatt
                       Bonobo  caca-g---g-gaaaagactcctcagtgtc-t-gtgtggttacagttc---tgaatgtgta--taatatt
                      Gorilla  caca-g---g-gaaaagactccttagtgtc-t-gtgtggttacagttc---tgaatgtgta--taatatt
                    Orangutan  caca-g---g-gaaaagactcctcagtgtctt-gtgtggttacagttc---tgaatgtgta--taatatt
                       Gibbon  caca-g---g-gaaaagactcctcggtgtc-t-gcgtggttacagttc---tgaatgtgta--taatatt
                       Rhesus  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
          Crab-eating macaque  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
           Pig-tailed macaque  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
               Sooty mangabey  caca-g---g-gaaaagactcctcagtatc-t-gtatggttacagttc---taaatgtgtg--taatatt
                       Baboon  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
                 Green monkey  cacagg---g-gaaaagactccttagtgtc-t-gtatggttacagttc---taaa--tgtg--taatatt
                        Drill  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
             Proboscis monkey  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
              Angolan colobus  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
     Golden snub-nosed monkey  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
      Black snub-nosed monkey  caca-g---g-gaaaagactcctcagtgtc-t-gtatggttacagttc---taaatgtgtg--taatatt
                     Marmoset  caca-g---g-gaaaagactcctcagtctc-t-gtgtggttacagttc---tgaatgtgtg--taatatt
              Squirrel monkey  caca-g---g-gaaaagactcctcagtgtc----tgtggttacagttc---tgaatgtgtgtataatatt
          White-faced sapajou  caca-g---g-gaaaagactcctcagtgtc-t-gtgtggttacagttc---tgaatgtgtg--taatatt
            Ma's night monkey  caca-g---g-gaaaagactcctcagtgtc-t-gtgtggttacagttc---tgaatgtgtg--taatatt
                      Tarsier  caca-----g-gaagaggtggttcagcgtc-t-g--tggttgcagttc---tgtgtgtgta--taatatt
                  Mouse lemur  caca-g---gagaatagactgttcagtgtc-a-gtgtgattacagttg---tgtgtatgtg--caatatt
            Coquerel's sifaka  caca-g---gagaatagactgttcagtgtc-t-gtgtgatcacagttc---tgtgtgtgtg--tcacatt
                  Black lemur  caca-g---gagaacagactgttcagtgtc-t-gtgtgatgacagttc---tgtgtgtgta--taacatt
              Sclater's lemur  caca-g---gagaacagactgttcagtgtc-t-gtgtgatgacagttc---tctgtgtgta--taacatt
                     Bushbaby  caga-g---gacaatagactgttcggtgtc-t-gtgtgattccagtttttgtgtgtgtgag--tgatatt
                        Mouse  caca-gatag-gtagag------cgatgtt-tcgtgtggcctcagttc---cctgcgtgta--taagatt
                          Dog  ca-g-g---a-taaaagaccgttcggggtc-t-atgcagttgaagttc---cg--tgcgta--taatact
                    Armadillo  cacatg---g-gaaaagact----agtgtt-t-gtgcaattgcagttc---tgtgtgtata--taatatt

                        Human  t---------------------------------------------------------------------
                        Chimp  t---------------------------------------------------------------------
                       Bonobo  t---------------------------------------------------------------------
                      Gorilla  t---------------------------------------------------------------------
                    Orangutan  t---------------------------------------------------------------------
                       Gibbon  t---------------------------------------------------------------------
                       Rhesus  t---------------------------------------------------------------------
          Crab-eating macaque  t---------------------------------------------------------------------
           Pig-tailed macaque  t---------------------------------------------------------------------
               Sooty mangabey  t---------------------------------------------------------------------
                       Baboon  taacattttgacttgtgccacttcaccctctataatcatctttcagagcaatggtccccaaacctggctg
                 Green monkey  t---------------------------------------------------------------------
                        Drill  t---------------------------------------------------------------------
             Proboscis monkey  t---------------------------------------------------------------------
              Angolan colobus  t---------------------------------------------------------------------
     Golden snub-nosed monkey  t---------------------------------------------------------------------
      Black snub-nosed monkey  t---------------------------------------------------------------------
                     Marmoset  t---------------------------------------------------------------------
              Squirrel monkey  t---------------------------------------------------------------------
          White-faced sapajou  t---------------------------------------------------------------------
            Ma's night monkey  t---------------------------------------------------------------------
                      Tarsier  t---------------------------------------------------------------------
                  Mouse lemur  t---------------------------------------------------------------------
            Coquerel's sifaka  t---------------------------------------------------------------------
                  Black lemur  t---------------------------------------------------------------------
              Sclater's lemur  t---------------------------------------------------------------------
                     Bushbaby  t---------------------------------------------------------------------
                        Mouse  t---------------------------------------------------------------------
                          Dog  t---------------------------------------------------------------------
                    Armadillo  t---------------------------------------------------------------------

                        Human  --------------------------aacattttgacttatgcc
                        Chimp  --------------------------aacattttgacttatgcc
                       Bonobo  --------------------------aacattttgacttatgcc
                      Gorilla  --------------------------aacattttgacttatgcc
                    Orangutan  --------------------------aacattttgacttatgcc
                       Gibbon  --------------------------aacattttgacttatgcc
                       Rhesus  --------------------------aacattttgacttgtgcc
          Crab-eating macaque  --------------------------aacattttgacttgtgcc
           Pig-tailed macaque  --------------------------aacattttgacttgtgcc
               Sooty mangabey  --------------------------aacattttgacttgtgcc
                       Baboon  catgtcagaatcatctgggaatagaaaatattcagattttggcc
                 Green monkey  --------------------------aacattttgacttgtgcc
                        Drill  --------------------------aacattttgacttgtgcc
             Proboscis monkey  --------------------------aacattttgacttgtgcc
              Angolan colobus  --------------------------aacattttgacttgtgcc
     Golden snub-nosed monkey  --------------------------aacattttgacttgtgac
      Black snub-nosed monkey  --------------------------aacattttgacttgtgac
                     Marmoset  --------------------------aacattttgatttatgcc
              Squirrel monkey  --------------------------aacattttgatttatgcc
          White-faced sapajou  --------------------------aacattttgatttatgcc
            Ma's night monkey  --------------------------aacattttgatttatgcc
                      Tarsier  --------------------------aacatcttgacttacacc
                  Mouse lemur  --------------------------aacattctgacttaaacc
            Coquerel's sifaka  --------------------------aacattctgacttatgcc
                  Black lemur  --------------------------aacattttgacttatacc
              Sclater's lemur  --------------------------aacattttgacttatacc
                     Bushbaby  --------------------------aagattctgacttacacc
                        Mouse  ---------------------------acactttggcttgtgcc
                          Dog  --------------------------aatattttggcttatagc
                    Armadillo  --------------------------tacattttggcttcaacc

Inserts between block 53 and 54 in window
                      Baboon 240bp

Alignment block 54 of 323 in window, 57800020 - 57800051, 32 bps 
B D                     Human  acttcaccctctgtaatcatctttgataacaa
B D                     Chimp  acttcaccctctgtaatcatctttgataacga
B D                    Bonobo  acttcaccctctgtaatcatctttgataacga
B D                   Gorilla  acttcaccctctgtaatcatctttgataacaa
B D                 Orangutan  agttcaccctctgtaatcatctttgataacaa
B D                    Gibbon  acttcaccctctgtaatcatctttgataacaa
B D                    Rhesus  acttcaccctctataatcatctttcagagcaa
B D       Crab-eating macaque  acttcaccctctataatcatctttcagagcaa
           Pig-tailed macaque  acttcaccctctataatcatctttcagagcaa
               Sooty mangabey  acttcaccctctataatcatctttcagaggaa
B D              Green monkey  acttcaccctctataatcatctttcagagcaa
                        Drill  acttcaccctctataatcatctttcagaggaa
B D          Proboscis monkey  acttcaccctctataatcatctttcagagcaa
              Angolan colobus  acgtcaccctctataatcatcat---------
B D  Golden snub-nosed monkey  acttcaccctctataatcatctttcagagcaa
      Black snub-nosed monkey  acttcaccctctataatcatctttcagagcaa
B D                  Marmoset  acttcaccctctgtaacaatctttcagaacaa
B D           Squirrel monkey  acttcaccctctgcaatcatctttcagaacaa
          White-faced sapajou  actttgccctctgtcatcatctttcagaacaa
            Ma's night monkey  acttcaccctctgtaatcatctttcagaacaa
B D                   Tarsier  acatcaccctttgtcatcatctttcagaacaa
                  Mouse lemur  acttcaccctttgtaatcatctttcagaacag
            Coquerel's sifaka  acttaaccctttgtaatcatctttcagaacaa
                  Black lemur  acttcaccctttgtaatcatctttcggaacaa
              Sclater's lemur  acttcaccctttgtaatcatctttcggaacaa
B D                  Bushbaby  acttcaccttttctaatcattgttcagaacaa
B D                     Mouse  tctgcatcctttgtgaacatctttcagaacgg
B D                       Dog  gtggcaccctttgtggtcatcttttagaacag
B D                 Armadillo  ccttcacccttcataattgtcttgcagaacaa
                      Baboon  ================================

Alignment block 55 of 323 in window, 57800052 - 57800145, 94 bps 
B D                     Human  tgctccccaaacctggctgcatgtcagaatc---------------------------------------
B D                     Chimp  tgctccccaaacctggctgcatgtcagaatc---------------------------------------
B D                    Bonobo  tgctccccaaacctggctgcatgtcagaatc---------------------------------------
B D                   Gorilla  tgctccccaaacctggctgcatgtcagaatc---------------------------------------
B D                 Orangutan  tgctccccaaacctggctgcatgtcagaatc---------------------------------------
B D                    Gibbon  tgctccccaaacctggctgcatgtcacaatc---------------------------------------
B D                    Rhesus  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
B D       Crab-eating macaque  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
           Pig-tailed macaque  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
               Sooty mangabey  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
                       Baboon  tgcactccagcctgggctacagagcgagact---------------------------------------
B D              Green monkey  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
                        Drill  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
B D          Proboscis monkey  tggtctccaaacctggctgcatgtcagaatc---------------------------------------
              Angolan colobus  ---tccccaaacctggctgcatgtcagaatc---------------------------------------
B D  Golden snub-nosed monkey  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
      Black snub-nosed monkey  tggtccccaaacctggctgcatgtcagaatc---------------------------------------
B D                  Marmoset  tggtccccaaacctggctgcatgtcagagtc---------------------------------------
B D           Squirrel monkey  tgctcccgaaacctggttgcatgtcagagtc---------------------------------------
          White-faced sapajou  tggtccccaaacctggttgtatgtcagagtc---------------------------------------
            Ma's night monkey  tggtccccaaacctggttgcacgtcagagtc---------------------------------------
B D                   Tarsier  tggtccccaaacctggctgcgtgtcagaatc---------------------------------------
                  Mouse lemur  tggtccccaaacctagctgcatgtcataatc---------------------------------------
            Coquerel's sifaka  tggtccccaaacctagctgcatgtcagagtc---------------------------------------
                  Black lemur  tggtccccaaacctagctgcatgtcagaatc---------------------------------------
              Sclater's lemur  tggtccccaaacctagctgcatgtcagaatc---------------------------------------
B D                  Bushbaby  tggttcccaaacctagctgtatatcagaata---------------------------------------
B D                     Mouse  tggtccctaaacctggatgcctgacaaacctggggacgctgattcagcaggtccagtgtgagcctttagg
B D                       Dog  tggtccctaaagctggctgcgtgacagcatc---------------------------------------
B D                 Armadillo  tggtcaccaaacatgattgcatgtctgaatc---------------------------------------

                        Human  -----atct----------------------gggaatagaaaatattcagattt----------------
                        Chimp  -----atct----------------------gggaatagaaaatattcagattt----------------
                       Bonobo  -----atct----------------------gggaatagaaaatattcagattt----------------
                      Gorilla  -----atct----------------------gggaatagaaaatattcagattt----------------
                    Orangutan  -----atct----------------------gggaatagaaaatattcagattt----------------
                       Gibbon  -----atct----------------------gggaatagaaaatactcagattt----------------
                       Rhesus  -----atct----------------------gggaatagaaaatattcagattt----------------
          Crab-eating macaque  -----atct----------------------gggaatagaaaatattcagattt----------------
           Pig-tailed macaque  -----atct----------------------gggaatagaaaatattcagattt----------------
               Sooty mangabey  -----atct----------------------gggaatagaaaatattcagattt----------------
                       Baboon  -----ctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaagaaaatattcagattt----------------
                 Green monkey  -----atct----------------------gggaatagaaaatattcagattt----------------
                        Drill  -----atct----------------------gggaatagaaaatattcagattt----------------
             Proboscis monkey  -----atct----------------------gggaatagaaaatattcagattt----------------
              Angolan colobus  -----atct----------------------gggaatagaaaatactcagattt----------------
     Golden snub-nosed monkey  -----atct----------------------gggaatagaaaatattcagattt----------------
      Black snub-nosed monkey  -----atct----------------------gggaatagaaaatattcagattt----------------
                     Marmoset  -----atct----------------------gggaatagaaaatattcagattt----------------
              Squirrel monkey  -----atct----------------------gggaatagaaaatattcagattt----------------
          White-faced sapajou  -----atct----------------------gggaatagaaaatattcagattt----------------
            Ma's night monkey  -----atct----------------------gggaatagtaaatattcagattt----------------
                      Tarsier  -----atct----------------------gggaatcaacaatattcagattt----------------
                  Mouse lemur  -----atct----------------------gg-aatcaaaaacattcagattt----------------
            Coquerel's sifaka  -----atct----------------------ggtaatcaaaaatattcagattt----------------
                  Black lemur  -----atct----------------------gggaatcaaaaatactcagattt----------------
              Sclater's lemur  -----atct----------------------gggaatcaaaaatactcagattt----------------
                     Bushbaby  -----atct----------------------gggaatcaaaaatagtcagattt----------------
                        Mouse  gccagatct----------------------gcgtgcacactacacttaggtctaaccatgcattacata
                          Dog  -----atct----------------------gggaatctaaaatattcagattt----------------
                    Armadillo  -----atct----------------------gggaatctaaataatccagattt----------------

                        Human  ------tggggttgt----tcttggga----aagc-------tga--ttc------agtaagtcc
                        Chimp  ------tggggttgt----tcttggga----aagc-------tga--ttc------agtaagtcc
                       Bonobo  ------tggggttgt----tcttggga----aagctgattcatga--ttc------agtaagtcc
                      Gorilla  ------tggg---gt----tcttggga----aagc-------tga--ttc------agtaagtcc
                    Orangutan  ------tggggttgt----tcttggga----aagc-------tga--ttc------agtaagtcc
                       Gibbon  ------gggggttgt----tcttggga----aagc-------tga--ttc------agtaagtcc
                       Rhesus  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
          Crab-eating macaque  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
           Pig-tailed macaque  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
               Sooty mangabey  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
                       Baboon  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
                 Green monkey  ------cggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
                        Drill  ------tggggttgt----ttttggga----aaag-------tga--ttc------agtaagttc
             Proboscis monkey  ------tggggttat----tcttggga----aagg-------tga--ttc------agtaagtcc
              Angolan colobus  ------tggggttgt----tcttggga----aagg-------tga--ttc------agtaagtcc
     Golden snub-nosed monkey  ------tggggttat----tcttggga----aagg-------tga--ttc------agtaagtcc
      Black snub-nosed monkey  ------tggggttat----tcttggga----aagg-------tga--ttc------agtaagtcc
                     Marmoset  ------gggggttgt----tattggga----aagc-------tga--ttc------attaagtcc
              Squirrel monkey  ------gggg---gt----tcctggga----aagc-------tga--ttc------attaagtcc
          White-faced sapajou  ------tggggttgt----tcttggga----aagc-------tga--ttc------attaagtcc
            Ma's night monkey  ------tggggttgt----tcttggga----aagc-------tga--ttc------attaagtcc
                      Tarsier  ------ggggatctt----tcttggga----aaac-------tga--ttc------agtgtgtct
                  Mouse lemur  ------ggggatcct----tcttggga----aagc-------tgt--ttc------aataagtct
            Coquerel's sifaka  ------ggggatcct----tcttggga----aagc-------tga--ttc------agtaagtct
                  Black lemur  ------ggggatctt----tcttggga----aagc-------tga--ttc------agtgagttt
              Sclater's lemur  ------ggggatctt----tcttggga----aagc-------tga--ttc------agtgagttt
                     Bushbaby  ------ggggatcct----ttgtggga----aaat-------cga--ttt------agtaagttt
                        Mouse  tagatgtgtgtttgtgtagtgctgggaactgaagc-------caaagcct------cgtgcatcc
                          Dog  -------ggggtcct----ccttggga----aagc-------tga--ttc------a-tgagtcc
                    Armadillo  ------tggggtact----tcttggga----gagc-------taa--tttcattaaggtaggccc

Inserts between block 55 and 56 in window
B D                Armadillo 270bp

Alignment block 56 of 323 in window, 57800146 - 57800156, 11 bps 
B D                     Human  aaggca-agtcc
B D                     Chimp  aaggca-agtcc
B D                    Bonobo  aaggca-agtcc
B D                   Gorilla  aaggca-agtcc
B D                 Orangutan  aaggca-agtcc
B D                    Gibbon  aaggca-agtcc
B D                    Rhesus  aaggca-agtcc
B D       Crab-eating macaque  aaggca-agtcc
           Pig-tailed macaque  aaggca-agtcc
               Sooty mangabey  aaggca-agtcc
                       Baboon  aaggca-agtcc
B D              Green monkey  aaggca-agtcc
                        Drill  aaggca-agtcc
B D          Proboscis monkey  aaagca-agtcc
              Angolan colobus  aaggca-agtgc
B D  Golden snub-nosed monkey  aaagca-agtcc
      Black snub-nosed monkey  aaagca-agtcc
B D                  Marmoset  aaggca-agccc
B D           Squirrel monkey  aaggca-agtcc
          White-faced sapajou  aaggca-agtcc
            Ma's night monkey  aaggca-agtcc
B D                   Tarsier  aacgtg-aatcc
                  Mouse lemur  aaggtg-agtcc
            Coquerel's sifaka  aaggtg-agtcc
                  Black lemur  aaggtg-agtcc
              Sclater's lemur  aaggtg-agtcc
B D                  Bushbaby  aag-----atcc
B D                     Mouse  tgggca-ggtgc
B D                       Dog  agggtagattcc
B D                 Armadillo  ============

Alignment block 57 of 323 in window, 57800157 - 57800173, 17 bps 
B D                     Human  tgtatagctagtttggc
B D                     Chimp  tgtatagctagtttggc
B D                    Bonobo  tgtatagctagtttggc
B D                   Gorilla  tgtatagctagtttggc
B D                 Orangutan  tgtatagctagtttggc
B D                    Gibbon  tgtatagctagtttggc
B D                    Rhesus  tgtatagccagtttggc
B D       Crab-eating macaque  tgtatagccagtttggc
           Pig-tailed macaque  tgtatagccagtttggc
               Sooty mangabey  tgtatagccagtttggc
                       Baboon  tgtatagccagtttggc
B D              Green monkey  tgtatagccagtttggc
                        Drill  tgtatagccagtttggc
B D          Proboscis monkey  tgtatagccagtttggc
              Angolan colobus  tgtatagccagtttggc
B D  Golden snub-nosed monkey  tgtatagccagtttggc
      Black snub-nosed monkey  tgtatagccagtttggc
B D                  Marmoset  tgtatagccagttttgc
B D           Squirrel monkey  tgtatagccagttttgc
          White-faced sapajou  tgtatagccagttttgc
            Ma's night monkey  tgtatagccagttttgc
B D                   Tarsier  tgtatagccagatgggc
                  Mouse lemur  tgtatatccattttggc
            Coquerel's sifaka  tgtatatccattttggc
                  Black lemur  tggatattcattttggc
              Sclater's lemur  tggatattcattttggc
B D                  Bushbaby  tgtgtgt-cggcttggc
B D                     Mouse  cactgagctgt------
B D                       Dog  tatgtagccagtttggc
B D                 Armadillo  tgtatagccagtttgga

Inserts between block 57 and 58 in window
B D                 Bushbaby 1051bp

Alignment block 58 of 323 in window, 57800174 - 57800228, 55 bps 
B D                     Human  atacatcttgtgtctggatctcattt--gaatattgggatcacata----ccttctcttgg
B D                     Chimp  atacatgttgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttgg
B D                    Bonobo  atacatgttgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttgg
B D                   Gorilla  atacatgttgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttgg
B D                 Orangutan  atacatattgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttgg
B D                    Gibbon  atacatgttgtgcctgaatctcattt--gaatattgggatcacata----ccttttcttgg
B D                    Rhesus  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttgg
B D       Crab-eating macaque  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttgg
           Pig-tailed macaque  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttgg
               Sooty mangabey  atacatgttgtgccggaatcccattt--gaatattgggatcacata----ccttctcttgg
                       Baboon  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttgg
B D              Green monkey  atacatggtgtgccggaatctcattt--gaatattgggatcacata----ccttctcttgg
                        Drill  atacatgttgtgccagaatctcattt--gaatattgggatcacata----ccttctcttgg
B D          Proboscis monkey  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttag
              Angolan colobus  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttag
B D  Golden snub-nosed monkey  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttag
      Black snub-nosed monkey  atacatgttgtgccggaatctcattt--gaatattgggatcacata----ccttctcttag
B D                  Marmoset  atatatgctgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttga
B D           Squirrel monkey  atatatgctgtgcgtgaatctcattt--gaatattgggatcacata----ccttctcttgt
          White-faced sapajou  atatgtgctgtgcctgaatctcattt--gaatattgggatcacata----ccttctcttga
            Ma's night monkey  atatatgctgtgcctgaatctcattt--gaatattggcatcacata----ccttctcttga
B D                   Tarsier  acccatactgtgcctgcatctcattt--aaatattgggattacacg----ccttctctggg
                  Mouse lemur  atacatgctgtgcctaaatctcattt--aaatattgggatcacata----ccttttcttgg
            Coquerel's sifaka  atacatgctgtgcctaaatcttattt--aaatattgtgatcacgta----ccttctcttgg
                  Black lemur  atacatgctgtgcctaaatctcagtt--aaagattgtgatcacata----ccttctcttgg
              Sclater's lemur  atacatgctgtgcctaaatctcagtt--aaagattgtgatcacata----ccttctcttgg
B D                     Mouse  ctacctcttg---ctggaagtcattttcaagtactgtgatcatatatatcccatcctttgg
B D                       Dog  -ttcacgctgtgctgaaatctcattt--aaatgctgtgatcacata----ctttcttttgg
B D                 Armadillo  ataaatactgtacttaaatctcactt--aaatattgggattacata----ccttctcttgg
B D                  Bushbaby  =============================================================

Inserts between block 58 and 59 in window
           Coquerel's sifaka 21bp

Alignment block 59 of 323 in window, 57800229 - 57800240, 12 bps 
B D                     Human  tacttttattt--a-
B D                     Chimp  tacttttattt--a-
B D                    Bonobo  tacttttattt--a-
B D                   Gorilla  tacttttattt--a-
B D                 Orangutan  tacttttattt--a-
B D                    Gibbon  tacttttattt--a-
B D                    Rhesus  tacttttattt--a-
B D       Crab-eating macaque  tacttttattt--a-
           Pig-tailed macaque  tacttttattt--a-
               Sooty mangabey  tacttttattt--a-
                       Baboon  tacttttattt--a-
B D              Green monkey  tacttttattt--a-
                        Drill  tacttttattt--a-
B D          Proboscis monkey  tacttttattt--a-
              Angolan colobus  tacttttattt--a-
B D  Golden snub-nosed monkey  tacttttattt--a-
      Black snub-nosed monkey  tacttttattt--a-
B D                  Marmoset  tacttttattt--a-
B D           Squirrel monkey  tacttttattt--a-
          White-faced sapajou  tacttttattt--a-
            Ma's night monkey  tacttttattt--a-
B D                   Tarsier  cactttttttttag-
                  Mouse lemur  cacttctattt--a-
                  Black lemur  cacttctattt--a-
              Sclater's lemur  cacttctactt--a-
B D                     Mouse  ggtttttatcc--a-
B D                       Dog  cacttgtattt--a-
B D                 Armadillo  tacttgtactt--gg
           Coquerel's sifaka  ===============
B D                  Bushbaby  ===============

Inserts between block 59 and 60 in window
                 Mouse lemur 1bp
                 Black lemur 1bp
             Sclater's lemur 1bp
B D                    Mouse 1bp
B D                      Dog 1bp

Alignment block 60 of 323 in window, 57800241 - 57800260, 20 bps 
B D                     Human  gccctgcatttccagccttt
B D                     Chimp  gccctgcatttccagccttt
B D                    Bonobo  gccctgcatttccagccttt
B D                   Gorilla  gccctgcatttccagtcttt
B D                 Orangutan  gccctgcatttccagccttt
B D                    Gibbon  gctctgcatttccagccttt
B D                    Rhesus  gccctgcatttccagccttt
B D       Crab-eating macaque  gccctgcatttccagccttt
           Pig-tailed macaque  gccctgcatttccagccttt
               Sooty mangabey  gccctgcatttccagccttt
                       Baboon  gccctgcatttccagccttt
B D              Green monkey  gccctgcatttccagccttt
                        Drill  gccctgcatttccagccttt
B D          Proboscis monkey  gccctgcatttccagccttt
              Angolan colobus  gccctgcatttccagccttt
B D  Golden snub-nosed monkey  gccttgcatttccagccttt
      Black snub-nosed monkey  gccttgcatttccagccttt
B D                  Marmoset  gccctgcatttccagccttt
B D           Squirrel monkey  gccctacatttccagccttt
          White-faced sapajou  gccctgcatttccagccttt
            Ma's night monkey  gccctgcatttccagccttt
B D                   Tarsier  gcccttttttt------ttt
                  Mouse lemur  gccctacatttccagtcttt
            Coquerel's sifaka  gccctacatttccagtcttt
                  Black lemur  gccctacatttccagtcttt
              Sclater's lemur  gccgtacatttccagtcttt
B D                     Mouse  gtcctacgttttcagttgtt
B D                       Dog  tctctacatttccagccttt
B D                 Armadillo  gtcctacatgtccagctttt
B D                  Bushbaby  ====================

Inserts between block 60 and 61 in window
B D                 Marmoset 3bp
B D          Squirrel monkey 2bp
         White-faced sapajou 30bp
           Ma's night monkey 30bp

Alignment block 61 of 323 in window, 57800261 - 57800269, 9 bps 
B D                     Human  aaatgactt
B D                     Chimp  aaatgactt
B D                    Bonobo  aaatgactt
B D                   Gorilla  aaatgactt
B D                 Orangutan  aaatgactt
B D                    Gibbon  aaatgactt
B D                    Rhesus  aaatgactt
B D       Crab-eating macaque  aaatgactt
           Pig-tailed macaque  aaatgactt
               Sooty mangabey  aaatgactt
                       Baboon  aaatgactt
B D              Green monkey  aaatgactt
                        Drill  aaatgactt
B D          Proboscis monkey  aaatgactt
              Angolan colobus  aaatgactt
B D  Golden snub-nosed monkey  aaatgactt
      Black snub-nosed monkey  aaatgactt
B D                  Marmoset  aaaagtctt
B D           Squirrel monkey  caaagtctt
B D                   Tarsier  ------ttt
                  Mouse lemur  aaatgactt
            Coquerel's sifaka  aaatgactt
                  Black lemur  aaatgactt
              Sclater's lemur  aaatgactt
B D                     Mouse  aaatgcttt
B D                       Dog  aaatgactt
B D                 Armadillo  aaataactt
         White-faced sapajou  =========
B D                  Bushbaby  =========
           Ma's night monkey  =========

Inserts between block 61 and 62 in window
           Coquerel's sifaka 379bp

Alignment block 62 of 323 in window, 57800270 - 57800284, 15 bps 
B D                     Human  taggttgtagtccta
B D                     Chimp  taggttgtagtccta
B D                    Bonobo  taggttgtagtccta
B D                   Gorilla  taggttgtagtccta
B D                 Orangutan  taggttgtagtccta
B D                    Gibbon  caggttgtagtccta
B D                    Rhesus  caggttgtagttcta
B D       Crab-eating macaque  caggttgtagttcta
           Pig-tailed macaque  caggttgtagttcta
               Sooty mangabey  caggttgtagttcta
                       Baboon  caggttgtagttcta
B D              Green monkey  caggttgtagttcta
                        Drill  caggttgtagttcta
B D          Proboscis monkey  caggttgtagttcta
              Angolan colobus  caggttgtagttcta
B D  Golden snub-nosed monkey  caggttgtagttcta
      Black snub-nosed monkey  caggttgtagttcta
B D                  Marmoset  ccag--------cct
B D           Squirrel monkey  ccag--------cct
B D                   Tarsier  tgagttggagtctca
                  Mouse lemur  cagattgaagtcata
                  Black lemur  cagattgaagtcata
              Sclater's lemur  catattgaagtcata
B D                     Mouse  cagactgaagctatg
B D                       Dog  cagattgaagtcaca
B D                 Armadillo  cagattaaaatcata
           Coquerel's sifaka  ===============
         White-faced sapajou  ===============
B D                  Bushbaby  ===============
           Ma's night monkey  ===============

Inserts between block 62 and 63 in window
                 Mouse lemur 5bp
                 Black lemur 5bp
             Sclater's lemur 5bp
B D                Armadillo 5bp

Alignment block 63 of 323 in window, 57800285 - 57800285, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                    Bonobo  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
           Pig-tailed macaque  c
               Sooty mangabey  c
                       Baboon  c
B D              Green monkey  c
                        Drill  c
B D          Proboscis monkey  c
              Angolan colobus  c
B D  Golden snub-nosed monkey  c
      Black snub-nosed monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                   Tarsier  c
                  Mouse lemur  c
            Coquerel's sifaka  c
                  Black lemur  c
              Sclater's lemur  c
B D                     Mouse  c
B D                       Dog  c
B D                 Armadillo  c
         White-faced sapajou  =
B D                  Bushbaby  =
           Ma's night monkey  =

Inserts between block 63 and 64 in window
B D                  Tarsier 394bp
B D                      Dog 5bp

Alignment block 64 of 323 in window, 57800286 - 57800292, 7 bps 
B D                     Human  ttaaata
B D                     Chimp  ttaaata
B D                    Bonobo  ttaaata
B D                   Gorilla  ttaaata
B D                 Orangutan  ttcaata
B D                    Gibbon  ttacata
B D                    Rhesus  ttaaata
B D       Crab-eating macaque  ttaaata
           Pig-tailed macaque  ttaaata
               Sooty mangabey  ttaaata
                       Baboon  ttaaata
B D              Green monkey  ttaaata
                        Drill  ttaaata
B D          Proboscis monkey  ttaaata
              Angolan colobus  ttaaata
B D  Golden snub-nosed monkey  ttaaata
      Black snub-nosed monkey  ttaaata
B D                  Marmoset  ttaaaaa
B D           Squirrel monkey  ttaaaaa
B D                   Tarsier  ttaaata
                  Mouse lemur  ttaaata
            Coquerel's sifaka  ttatata
                  Black lemur  ttaaata
              Sclater's lemur  ttaaata
B D                     Mouse  ttaaata
B D                       Dog  ttaaatg
B D                 Armadillo  ttaagtt
         White-faced sapajou  =======
B D                  Bushbaby  =======
           Ma's night monkey  =======

Inserts between block 64 and 65 in window
B D                 Marmoset 3bp
B D          Squirrel monkey 3bp

Alignment block 65 of 323 in window, 57800293 - 57800431, 139 bps 
B D                     Human  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                     Chimp  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                    Bonobo  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                   Gorilla  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                 Orangutan  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                    Gibbon  caatttaaagatacta----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                    Rhesus  taatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtggagcacaaaggacagaa
B D       Crab-eating macaque  taatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtggagcacaaaggacagaa
           Pig-tailed macaque  taatttaaagatacta----tatcaaaattagctttagaa-tctgagtttgtggagcacaaaggacagaa
               Sooty mangabey  taatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtggagcacaaaggacagaa
                       Baboon  taatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtggagcacaaaggacagaa
B D              Green monkey  taatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtagagcacaaaggacagaa
                        Drill  taatttaaagatacta----tatcaacattagctttaaaa-tctgagtttgtggagcacaaaggacagaa
B D          Proboscis monkey  caatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtagagcacaaaggacagaa
              Angolan colobus  caatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtagagcacaaaggacagaa
B D  Golden snub-nosed monkey  caatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtagagcacaaaggacagaa
      Black snub-nosed monkey  caatttaaagatacta----tatcaacattagctttagaa-tctgagtttgtagagcacaaaggacagaa
B D                  Marmoset  catttaaaggctggaa----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D           Squirrel monkey  catttaaaggctggaa----cattaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
          White-faced sapajou  catttaaaggctgaaa----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
            Ma's night monkey  catttaaaggctggaa----catcaacattagctttggaa-tctgagtttgtagagcacaaaggacagaa
B D                   Tarsier  caatttaaggacacta----catcaacatttgctttgaaa-tctgagcttgtagaacacagaggacaaca
                  Mouse lemur  caatttaaagacacta----catcagcattagctttggca-tctgaatttgtaaagcacaaaggacaaaa
            Coquerel's sifaka  caatttaaagacacta----catcaacattagctttggaa-tctgaatttgtaaagcacaaagaacaaaa
                  Black lemur  caatttaaagacacta----catcaacattagctttggaa-tctgaatttgtaaagcacaaag-acaaaa
              Sclater's lemur  caatttaaagacacta----catcaacattagctttggaa-tctgaatttgtaaagcacaaag-acaaaa
B D                     Mouse  tactttaaagacactaatggcatcc-cattagctttggga-cctgggttagcagagcacagaggacaa--
B D                       Dog  cgttttaaagatacga----catcgctattagctctggaattttgaatatgtagagcacagaggggagga
B D                 Armadillo  cattttaaagaagttt----catcaactttagctttggaa-tctaaggttgtggagcacaaaggacaaaa
B D                  Bushbaby  ======================================================================

                        Human  ttgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                        Chimp  ttgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                       Bonobo  ttgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                      Gorilla  ttgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                    Orangutan  atgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                       Gibbon  ttgccagatggtttgaacacctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                       Rhesus  ttgca----ggtttgaactcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
          Crab-eating macaque  ttgca----ggtttgaactcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
           Pig-tailed macaque  ttgca----ggtttgaactcctggtgccatgcactcc-tcctgaggttaaagaact-ctggatt---cct
               Sooty mangabey  ttgca----ggtttgaactcctggtgccatgcacttc-tcctgaggttaaagaactgctggatt---cct
                       Baboon  ttgca----ggtttgaactcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                 Green monkey  ttgca----ggtttgaactcctggtgccatgcactcc-ttctgaggttaaagaactgctggatt---cct
                        Drill  ttgca----ggtttgaactcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
             Proboscis monkey  ttgca----ggtttgaactcctagtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
              Angolan colobus  ttgca----ggtttaaactccgggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
     Golden snub-nosed monkey  ttgca----ggtttgaattcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
      Black snub-nosed monkey  ttgca----ggtttgaattcctggtgccatgcactcc-tcctgaggttaaagaactgctggatt---cct
                     Marmoset  ttgccagatggtttgaacacctggtgccatgca---c-tcctgaggttaaagaactgctggatt---cct
              Squirrel monkey  ttgccagatggtttgaacacctggtgccatgca---c-tcctgaggttaaagaactgctggatt---cct
          White-faced sapajou  ttgccagatggtttgaccacctggtgccgtgca---c-tcctgaggttaaagaactgctagatt---cct
            Ma's night monkey  ttgccagatggtttgaacacctggtgccatgca---c-tcctgaggttaaagaactgctggatt---cct
                      Tarsier  ttgccaga-ggtttgaacacctggagccatgcacttg-tcttcaggttagagaggtactgggctccacct
                  Mouse lemur  ttgccaggtggtttgaacacctaatgccatttactca-tcctgaggttaatgagctgctggatc---cct
            Coquerel's sifaka  ttgccagatggtttgaacacctggtaccatgcattca-tcctgaggttaatgaactgctggatt---cct
                  Black lemur  ttgccagatggtttgaacacctggtgccatgcattct-tcctgaggttaatgaactgctggatt---cct
              Sclater's lemur  ttgccagatggtttgaacacctggtgccatgcattct-tcctgaggttaatgaactgctggatt---cct
                        Mouse  -tgtgtaaatgttggacctccctgtgtcatgaatcctatcctgtcattccaa-------gcgct---gct
                          Dog  ctgca-gatggtttggacacccactaccatgcactca-tcctgatgttaaagagctgttggatt---cct
                    Armadillo  ctgccagatggtttgaacacctggtgccatgcactcc-tcctcatgttaaagagcaatagggtt---cct
                     Bushbaby  ======================================================================

                        Human  ggctagag
                        Chimp  ggctagag
                       Bonobo  ggctagag
                      Gorilla  ggctagag
                    Orangutan  ggccagag
                       Gibbon  ggccagag
                       Rhesus  ggccagag
          Crab-eating macaque  ggccagag
           Pig-tailed macaque  ggccagag
               Sooty mangabey  ggccagag
                       Baboon  ggccagag
                 Green monkey  ggccagag
                        Drill  ggccagag
             Proboscis monkey  ggccagag
              Angolan colobus  ggccagag
     Golden snub-nosed monkey  ggccagag
      Black snub-nosed monkey  ggccagag
                     Marmoset  ggccagag
              Squirrel monkey  ggccagag
          White-faced sapajou  ggccagag
            Ma's night monkey  ggccagag
                      Tarsier  agccagag
                  Mouse lemur  ggccagag
            Coquerel's sifaka  ggcctgag
                  Black lemur  ggcctgag
              Sclater's lemur  ggcctgag
                        Mouse  ggccacaa
                          Dog  ggctggag
                    Armadillo  ggcaaaag
                     Bushbaby  ========

Inserts between block 65 and 66 in window
          Pig-tailed macaque 299bp

Alignment block 66 of 323 in window, 57800432 - 57800440, 9 bps 
B D                     Human  gctccactt-
B D                     Chimp  gctccactt-
B D                    Bonobo  gctccactt-
B D                   Gorilla  gctccactt-
B D                 Orangutan  gctccactt-
B D                    Gibbon  gctccactt-
B D                    Rhesus  gctctactt-
B D       Crab-eating macaque  gctctactt-
           Pig-tailed macaque  gctctactt-
               Sooty mangabey  gctctattt-
                       Baboon  gctctactt-
B D              Green monkey  gctctactt-
                        Drill  gctctactt-
B D          Proboscis monkey  gctctactt-
              Angolan colobus  gctctactt-
B D  Golden snub-nosed monkey  gctctacgt-
      Black snub-nosed monkey  gctctactt-
B D                  Marmoset  gctccactt-
B D           Squirrel monkey  gctccactt-
          White-faced sapajou  gctccactt-
            Ma's night monkey  gctccactt-
B D                   Tarsier  gctccacat-
                  Mouse lemur  gctctgctt-
            Coquerel's sifaka  gctctgctt-
                  Black lemur  gctctgctt-
              Sclater's lemur  gctctgctt-
B D                     Mouse  gctcca----
B D                       Dog  gttccactt-
B D                 Armadillo  gctgcacttt
B D                  Bushbaby  ==========

Inserts between block 66 and 67 in window
B D                   Rhesus 310bp
B D      Crab-eating macaque 310bp

Alignment block 67 of 323 in window, 57800441 - 57800500, 60 bps 
B D                     Human  cttttaaccattaaaataggtgtaaatggcctaagtttctgtggacttcactgtcagaaa
B D                     Chimp  cttttaaccattaaaataggtgtaaatggcctaagtttctgtggacttcactgtcagaaa
B D                    Bonobo  cttttaaccattaaaataggtgtaaatggcctaagtttctgtggacttcactgtcagaaa
B D                   Gorilla  cttttaaccattaaaataggtgtaaatggcctaagtttctttggacttcactatcagaaa
B D                 Orangutan  cttttaaccattaaaataggtgtaaatggtgtaagtttctgtggacttcactgtcagaaa
B D                    Gibbon  cttttaaccattaaaataggtgtaaatggcctaagttcctgtggacttcactgtcacaaa
B D                    Rhesus  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
B D       Crab-eating macaque  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
           Pig-tailed macaque  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
               Sooty mangabey  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
                       Baboon  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
B D              Green monkey  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
                        Drill  cttttaaccattaaaataggggtaaatggtctaagtttctgtggacttcactgtcagaaa
B D          Proboscis monkey  cttttaaccattaaaataggtgtaaatggtctaagtttctgtggatttcactgtcagaaa
              Angolan colobus  cttttaaccattaaaataggtgtaaatggtctaagtttctatggatttcactgtcagaaa
B D  Golden snub-nosed monkey  cttttaaccattaaaataggtgtaaatggtctaagtttctgtggatttcactgtcagaaa
      Black snub-nosed monkey  cttttaaccattaaaataggtgtaaatggtctaagtttctgtggatttcactgtcagaaa
B D                  Marmoset  cttttaaccattaaaatagctgtaaatggcctaagtttctttggacttcactgtcagaaa
B D           Squirrel monkey  cttttaaccattaaaatagctgtaaatgacctaagtttctttggacttcactgtcagaaa
          White-faced sapajou  cttttaaccattaaaatagctgtaaatggcctaaatttctttggacttcactgtcagaaa
            Ma's night monkey  cttttaaccattaaaatagctgtaaatggcctaagtttctttggacttcactgtcagaaa
B D                   Tarsier  ---ctagccattcaagtaggggtaaatagcccggatttctgtggacttcactgttagaat
                  Mouse lemur  cttttaactattaaaataagggtaaatgatctaagtttttatggacttcgctgtcagaaa
            Coquerel's sifaka  cttttaactattaaaataagggtaaatgacctaagtttttgtggacttcactgtcagaaa
                  Black lemur  cttttaactattaaaataggagcaaatgacctaagtttctgtgggcttcactgtcagaaa
              Sclater's lemur  cttttaactattaaaataggagcaaatgacctaagtttctgtgggcttcactgtcagaaa
B D                     Mouse  cttgtacctgttaaaataggggtccgtggcctaaaacgccgtggatttcaccataagaaa
B D                       Dog  cttttcacccttaaactaggggt-gatggcctgagtttttatggacttcactgtcagaaa
B D                 Armadillo  tttttagcctttaaaattggcataaatgacctaagcttctgtggacatcactgtcagaaa
B D                  Bushbaby  ============================================================

Inserts between block 67 and 68 in window
                 Mouse lemur 529bp
           Coquerel's sifaka 868bp
                 Black lemur 879bp
             Sclater's lemur 879bp

Alignment block 68 of 323 in window, 57800501 - 57800581, 81 bps 
B D                     Human  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                     Chimp  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                    Bonobo  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                   Gorilla  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                 Orangutan  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                    Gibbon  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatcg
B D                    Rhesus  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D       Crab-eating macaque  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
           Pig-tailed macaque  cgaataaaaatgtcatttgggttagaagc--tga---tttctgaaaaatactgccaatga-ctttaatct
               Sooty mangabey  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
                       Baboon  tgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D              Green monkey  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
                        Drill  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D          Proboscis monkey  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
              Angolan colobus  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D  Golden snub-nosed monkey  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
      Black snub-nosed monkey  cgaataaaaatgtcatttgggttagaagc--tta---tttctgaaaaatactgccaatga-ctttaatct
B D                  Marmoset  cgaacaaaaatgtcatttgggttagaagc--ttattttttctgaaaaatactgccaatga-ctttaatct
B D           Squirrel monkey  tgaacaaaaatgtcatttgggttagaagc--ttattatttctgaaaaatactgccaatga-ctttaatct
          White-faced sapajou  tgaacaaaaatgtcatttgggttagaagc--ttattatttctgaaaaatactgccaatga-ctttaatct
            Ma's night monkey  caaacaaaaatgtcatttgggttagaagc--ttattatttctgaaaaatactgccagtga-ctttaatct
B D                   Tarsier  ctgataaaggtatcatttgagttagaagctatta---tttctgacaaacactgccaataa-ctttaat--
B D                     Mouse  ctagtaaa-atatcatctgggttagaggc--ttg---tgcctgaggaataccaacaataa----------
B D                       Dog  ctggtaagcatgtcatttgggttagaagc--ttattatttatgaaaaatgctgccagtca-acttaatct
B D                 Armadillo  ttgataaaaatgccaattgggtcagaaac--ttactatttctgaaaaatactgccagtaaattttaatct
             Sclater's lemur  ======================================================================
           Coquerel's sifaka  ======================================================================
                 Mouse lemur  ======================================================================
                 Black lemur  ======================================================================
B D                  Bushbaby  ======================================================================

                        Human  ctccttaaacggcagag----
                        Chimp  ctccttaaatggcagag----
                       Bonobo  ctccttaaatggcagag----
                      Gorilla  ctccttaaatggcagag----
                    Orangutan  ctcc-taaatggcagag----
                       Gibbon  ctcc-taaatggcagag----
                       Rhesus  ctcc-taaatggcagag----
          Crab-eating macaque  ctcc-taaatggcagag----
           Pig-tailed macaque  ctcc-taaatggcagag----
               Sooty mangabey  ctcc-taaatggcagag----
                       Baboon  ctcc-taaatggcagag----
                 Green monkey  ctcc-taaatggcagag----
                        Drill  ctcc-taaatggcagag----
             Proboscis monkey  ctcc-taaatggcagag----
              Angolan colobus  ctcc-taaatggcagag----
     Golden snub-nosed monkey  ctcc-taaatggcagag----
      Black snub-nosed monkey  ctcc-taaatggcagag----
                     Marmoset  ctcc-aaaatggcagag----
              Squirrel monkey  ctcc-cacatggcagag----
          White-faced sapajou  ctcc-caaatggcagag----
            Ma's night monkey  ctcc-caaatggcagag----
                      Tarsier  ctcc-tgaataatagag----
                        Mouse  -tcc-taaaagg---------
                          Dog  gtcc-taaatgata-------
                    Armadillo  ctcc-tgaaaagcagagagag
              Sclater's lemur  =====================
            Coquerel's sifaka  =====================
                  Mouse lemur  =====================
                  Black lemur  =====================
                     Bushbaby  =====================

Alignment block 69 of 323 in window, 57800582 - 57800602, 21 bps 
B D                     Human  ttgaat-aataaaacaaatatt
B D                     Chimp  ttgaat-aataaaacaaatttt
B D                    Bonobo  ttgaat-aataaaacaaatttt
B D                   Gorilla  ttgaat-aataaaacaaatttt
B D                 Orangutan  ttgaat-aataaaacaaatttt
B D                    Gibbon  ttgaat-aataaaacaaatttt
B D                    Rhesus  ttgaat-aataaaacaagtttt
B D       Crab-eating macaque  ttgaat-aataaaacaagtttt
           Pig-tailed macaque  ttgaat-aataaaacaagtttt
               Sooty mangabey  ttgaat-aataaaacaagtttt
                       Baboon  ttgaat-aataaaacaagtttt
B D              Green monkey  ttgaat-aataaaacaagtttt
                        Drill  ttgaat-aataaaacaagtttt
B D          Proboscis monkey  ttgaat-aataaaacaagtttt
              Angolan colobus  ttgaat-aataaaacaagtttt
B D  Golden snub-nosed monkey  ttgaat-aataaaacaagtttt
      Black snub-nosed monkey  ttgaat-aataaaacaagtttt
B D                  Marmoset  ttgaat--acacaacaaatttt
B D           Squirrel monkey  ttgaat-aatacaacaaatttt
          White-faced sapajou  ttgaat-aatacaacaaatttt
            Ma's night monkey  ttgaat-aatacaacaaatttt
B D                   Tarsier  ggaattaaataaaataaacttt
B D                  Bushbaby  ttaaac-attaagaaaac----
B D                     Mouse  ctgagt-aataaagttaggttt
B D                       Dog  --gaat-aataaaattagtttt
B D                 Armadillo  tttaat-aataaaattagtttt
             Sclater's lemur  ======================
           Coquerel's sifaka  ======================
                 Mouse lemur  ======================
                 Black lemur  ======================

Inserts between block 69 and 70 in window
B D                  Tarsier 292bp

Alignment block 70 of 323 in window, 57800603 - 57800626, 24 bps 
B D                     Human  cattttt-------------tt----gttgttgtgtttttg
B D                     Chimp  cattttt-------------tt----tttgttgtttttttg
B D                    Bonobo  cattttt-------------t------ttgttgtttttttg
B D                   Gorilla  cattttt-------------tt-----ttgttgtttttttg
B D                 Orangutan  cattttt-------------tt-----ttgttgtttttttg
B D                    Gibbon  cattttt-------------tg-----ttgttgtttttttg
B D                    Rhesus  cattttt-------------tt----gttgttgtttttttg
B D       Crab-eating macaque  cattttt-------------tt----gttgttgtttttttg
           Pig-tailed macaque  cattttt-------------tt----gttgttgtttttttg
               Sooty mangabey  cattttt-------------tt----gttgtcgtttttttg
                       Baboon  cattttt-------------tt----gttgttgtttttttg
B D              Green monkey  cattttt-------------tt-----ttgttgtttttttg
                        Drill  cattttt-------------tt----gttgttgtttttttg
B D          Proboscis monkey  catttttg------------tt----gttgttgttttttgt
              Angolan colobus  catttt--------------tt----tttgttgtttttttg
B D  Golden snub-nosed monkey  catttttt------------tt----gttgttgtttttttg
      Black snub-nosed monkey  catttttt------------tt----gttgttgtttttttg
B D                  Marmoset  catttttg-------------------ttgttgttgttc--
B D           Squirrel monkey  catttttattgttggttttttt----tttgttgttgttc--
          White-faced sapajou  catttttgttgttgggtttttt-gtcgtcgttgttgttc--
            Ma's night monkey  catttttgttgttgggtttttttgttgttgttgttgttc--
B D                  Bushbaby  --------------------------ccttttttttttttg
B D                     Mouse  --tgttc-------------tt----attgttctttctttt
B D                       Dog  tggttttgtag---------tt----tttgtttgtttttta
B D                 Armadillo  catttatat-----------ta----cttattttgtttttg
             Sclater's lemur  =========================================
           Coquerel's sifaka  =========================================
                 Mouse lemur  =========================================
                 Black lemur  =========================================
B D                   Tarsier  =========================================

Inserts between block 70 and 71 in window
B D                      Dog 297bp
B D                Armadillo 3bp

Alignment block 71 of 323 in window, 57800627 - 57800627, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                    Bonobo  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
           Pig-tailed macaque  a
               Sooty mangabey  a
                       Baboon  a
B D              Green monkey  a
                        Drill  a
B D          Proboscis monkey  a
              Angolan colobus  a
B D  Golden snub-nosed monkey  a
      Black snub-nosed monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
          White-faced sapajou  a
            Ma's night monkey  a
B D                  Bushbaby  a
             Sclater's lemur  =
           Coquerel's sifaka  =
                 Mouse lemur  =
                 Black lemur  =
B D                   Tarsier  =
B D                     Mouse  -
B D                 Armadillo  =
B D                       Dog  =

Alignment block 72 of 323 in window, 57800628 - 57800649, 22 bps 
B D                     Human  gacggactctcgc----tctgttgcc
B D                     Chimp  gacggactctcac----tctgttgcc
B D                    Bonobo  gacggactctcac----tctgttgcc
B D                   Gorilla  ggcggactctcgc----tctgttgcc
B D                 Orangutan  gacggactctcgc----tctgttgcc
B D                    Gibbon  gacagactctcgc----tctgttgcc
B D                    Rhesus  gatggagtctccc----tctgttgtc
B D       Crab-eating macaque  gatggagtctccc----tctgttgtc
           Pig-tailed macaque  gatggagtctccc----tctgttgtc
               Sooty mangabey  gatggagtctccc----tctgttgtc
                       Baboon  gatggagtctccc----tctgttgtc
B D              Green monkey  gatggagtctccc----tctgttgtc
                        Drill  gatggagtctccc----tctgttgtc
B D          Proboscis monkey  gatggagtctccc----tctgttgtc
              Angolan colobus  gatggagtctccc----tctgttgtc
B D  Golden snub-nosed monkey  gatggagtctccc----tctgttgtc
      Black snub-nosed monkey  gatggagtctccc----tctgttgtc
B D                  Marmoset  gatggagtcttgc----tctgtcacc
B D           Squirrel monkey  tatggagtcttgt----tctgtcacc
          White-faced sapajou  gatggagtcttgc----tctgtcacc
            Ma's night monkey  gatggagtcttgc----tctgtcacc
B D                  Bushbaby  gac--aatctcactgaatcttactcc
B D                     Mouse  ------cttttgc----tttcttttc
             Sclater's lemur  ==========================
           Coquerel's sifaka  ==========================
                 Mouse lemur  ==========================
                 Black lemur  ==========================
B D                   Tarsier  ==========================
B D                 Armadillo  ==========================
B D                       Dog  ==========================

Inserts between block 72 and 73 in window
B D                    Mouse 153bp

Alignment block 73 of 323 in window, 57800650 - 57800700, 51 bps 
B D                     Human  caggctgga--gtgcagtggtgccatctcagctcacagcaacttccgcttcct
B D                     Chimp  caggctgga--gtgcagtggcgccatctcagctcacagcaacttccgcctcct
B D                    Bonobo  caggctgga--gtgcagtggcgccatctcagctcacagcaacttccgcctcct
B D                   Gorilla  caggctgga--gtacagtggcgccatctcagctcacagcaacttccgcctcct
B D                 Orangutan  caggctgga--gtgcagtggcgccatctcagctcacagcaacttctgcctcc-
B D                    Gibbon  caggctgga--gtgcagtggcgccat-tcagctcacagcaacttccgcctcct
B D                    Rhesus  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
B D       Crab-eating macaque  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
           Pig-tailed macaque  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
               Sooty mangabey  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
                       Baboon  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
B D              Green monkey  caggctgga--gtgcagtggtgccatctcagctgacagcaacctctgcctcct
                        Drill  caggctgga--gtgcagtggtgccatctcagccgacagcaacctctgcctcct
B D          Proboscis monkey  caggct-ga--gtgcagt-gcgttatctcagctcacagcaacctctgcctcct
              Angolan colobus  caggttgga--gtgcagtggcatcatctcagctcacagcaacctctgcctcct
B D  Golden snub-nosed monkey  caggctgga--gtgcagtggcgtcatctcagctcacagcaacctctgcctcct
      Black snub-nosed monkey  caggctgga--gtgcagtggcgtcatctcagctcacagcaacctctgcctcct
B D                  Marmoset  caggctggagtgtgcagtggcgtgatctcagcttactgcaacctcggcctcct
B D           Squirrel monkey  caggctggagtgtgcagtggcgtgatctcagtttactgcaacctcggcctcct
          White-faced sapajou  caggctggagtgtgcagtggcgtgatctcagcctactgcaacctcggcctcct
            Ma's night monkey  caggctggagtgtgcagtggtgtgatctcagcttaatgcaacctcggcctcct
B D                  Bushbaby  ttggctaga--gtgaaatggcacaatcatagctcactgtagccttgatctcct
             Sclater's lemur  =====================================================
           Coquerel's sifaka  =====================================================
                 Mouse lemur  =====================================================
                 Black lemur  =====================================================
B D                   Tarsier  =====================================================
B D                     Mouse  =====================================================
B D                 Armadillo  =====================================================
B D                       Dog  =====================================================

Alignment block 74 of 323 in window, 57800701 - 57800810, 110 bps 
B D                     Human  gggttcaagcagttctcctgtctcagcctcccgagtagctgggactacaggcg--catgccacca-----
B D                     Chimp  gggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggcg--catgccacca-----
B D                    Bonobo  gggttcaagcaattctcctgtctcagcctcctgagtagctgggactacaggca--catgccacca-----
B D                   Gorilla  gggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggcg--catgccacca-----
B D                 Orangutan  -ggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggtg--catgccacca-----
B D                    Gibbon  gggttcaagcaagtctcctgtctcagcctcccgagtagctgggactacaggcg--catgccacca-----
B D                    Rhesus  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
B D       Crab-eating macaque  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
           Pig-tailed macaque  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
               Sooty mangabey  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
                       Baboon  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
B D              Green monkey  aggttcaagcaattcacctgtctcaacctcccgagtagctgggactacaggcg--cccatcacca-----
                        Drill  aggttcaagcaattcacctgtctcagcctcccgagtagctgggactacaggcg--cccatcacca-----
              Angolan colobus  gggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggcgcccccaccacca-----
B D  Golden snub-nosed monkey  gggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggcg--cccaccacca-----
      Black snub-nosed monkey  gggttcaagcaattctcctgtctcagcctcccgagtagctgggactacaggcg--cccaccacca-----
B D                  Marmoset  gggttcaagtaattctcctgtctcagcctcctgaatagctgggactacaggca--tatgccaccaacccc
B D           Squirrel monkey  gggttcaagcaattcttctgtctcagcctcctaaatagctgggactataggcg--catgccacccaccca
          White-faced sapajou  gggttcaagcaattcccctgtctcagcctcctgaatagctgggactacaggcg--aactcc-----cccc
            Ma's night monkey  gggttcaagcaattctcctgtctcagcctcctgaatagctgggactacaggca--cacgccaccaccacc
B D                  Bushbaby  gggctcaattgatcctactgcctc------------agctgggactacaagtg--caagtcacca-----
             Sclater's lemur  ======================================================================
           Coquerel's sifaka  ======================================================================
                 Mouse lemur  ======================================================================
                 Black lemur  ======================================================================
B D          Proboscis monkey  ======================================================================
B D                   Tarsier  ======================================================================
B D                     Mouse  ======================================================================
B D                 Armadillo  ======================================================================
B D                       Dog  ======================================================================

                        Human  ---cggccggctaattttcatatttttagtagagacggggtttcaccata
                        Chimp  ---cgcccggctaattttcatatttttagtagagacggggtttcaccata
                       Bonobo  ---cgcccggctaattttcatattttttgtagagacggggtttcaccata
                      Gorilla  ---cgcccggctaattttcatatttttagtagagatggggtttcaccata
                    Orangutan  ---cacccagctaattttcatatttttagtagagatggggtttcaccata
                       Gibbon  ---tgcccggcaaatttttatatttttagtagagatggggtttcaccata
                       Rhesus  ---tgcccagctgattttcatatttttagtagagatggggtttcaccata
          Crab-eating macaque  ---tgcccagctgattttcgtatttttagtagagatggggtttcaccata
           Pig-tailed macaque  ---tgcccagctgattttcatatttttagtagagatggggtttcaccata
               Sooty mangabey  ---cgcccagctgattttcatatttttagtagagatggggtttcaccata
                       Baboon  ---cgcccagctgattttcatatttttagtagagatggggtttcaccata
                 Green monkey  ---cgcccagctgattttcata----tagtagagatggggtttcaccata
                        Drill  ---cgcccagctgattttcatatttttagtagagatggggtttcaccata
              Angolan colobus  ---cgcccggctaattttcatatttttagtagagatggggtttcaccata
     Golden snub-nosed monkey  ---cacccggctaattttcatatttttagtagagatggggtttcaccata
      Black snub-nosed monkey  ---cgcccggctaattttcatatttttagtagagatggggtttcaccata
                     Marmoset  caccccctggccaagtttcatatttttagtagagatggggtttcaccata
              Squirrel monkey  cctgccct-gcaaattttcatatttttagtagagatggggtttcaccata
          White-faced sapajou  caccctccggccagttttcatatttttagtggagatagggtttcaccata
            Ma's night monkey  aacccccaggccaattttcatatttttagtagagatggggtttcaccata
                     Bushbaby  ---cacccagctagtttttaaattttttgtagagatggggtgtctctatg
              Sclater's lemur  ==================================================
            Coquerel's sifaka  ==================================================
                  Mouse lemur  ==================================================
                  Black lemur  ==================================================
             Proboscis monkey  ==================================================
                      Tarsier  ==================================================
                        Mouse  ==================================================
                    Armadillo  ==================================================
                          Dog  ==================================================

Inserts between block 74 and 75 in window
                      Baboon 229bp

Alignment block 75 of 323 in window, 57800811 - 57800817, 7 bps 
B D                     Human  ttagtca
B D                     Chimp  ttagtca
B D                    Bonobo  ttagtca
B D                   Gorilla  ttagtca
B D                 Orangutan  ttagtca
B D                    Gibbon  tt----a
B D                    Rhesus  ttagtca
B D       Crab-eating macaque  ttagtca
           Pig-tailed macaque  ttagtca
               Sooty mangabey  tt----a
                       Baboon  ttagcca
B D              Green monkey  ttagtca
                        Drill  ttagtca
              Angolan colobus  ttagtca
B D  Golden snub-nosed monkey  tt----a
      Black snub-nosed monkey  tt----a
B D                  Marmoset  ttggtca
B D           Squirrel monkey  ttggtca
          White-faced sapajou  ttggtca
            Ma's night monkey  ttggtca
B D                  Bushbaby  ttgtcca
             Sclater's lemur  =======
           Coquerel's sifaka  =======
                 Mouse lemur  =======
                 Black lemur  =======
B D          Proboscis monkey  =======
B D                   Tarsier  =======
B D                     Mouse  =======
B D                 Armadillo  =======
B D                       Dog  =======

Alignment block 76 of 323 in window, 57800818 - 57800853, 36 bps 
B D                     Human  gg--------------------------------------------------------------------
B D                     Chimp  gg--------------------------------------------------------------------
B D                    Bonobo  gg--------------------------------------------------------------------
B D                   Gorilla  gg--------------------------------------------------------------------
B D                 Orangutan  gg--------------------------------------------------------------------
B D                    Gibbon  gg--------------------------------------------------------------------
B D                    Rhesus  gg--------------------------------------------------------------------
B D       Crab-eating macaque  gg--------------------------------------------------------------------
           Pig-tailed macaque  gg--------------------------------------------------------------------
               Sooty mangabey  gg--------------------------------------------------------------------
                       Baboon  ggatagtctcgatctcctgacctcgtgatccacccgtctcggcctcccaaagtgctgggattacaggctt
B D              Green monkey  gg--------------------------------------------------------------------
                        Drill  gg--------------------------------------------------------------------
              Angolan colobus  gg--------------------------------------------------------------------
B D  Golden snub-nosed monkey  gg--------------------------------------------------------------------
      Black snub-nosed monkey  gg--------------------------------------------------------------------
B D                  Marmoset  gg--------------------------------------------------------------------
B D           Squirrel monkey  gg--------------------------------------------------------------------
          White-faced sapajou  gg--------------------------------------------------------------------
            Ma's night monkey  gg--------------------------------------------------------------------
B D                  Bushbaby  gg--------------------------------------------------------------------
B D                     Mouse  gg--------------------------------------------------------------------
             Sclater's lemur  ======================================================================
           Coquerel's sifaka  ======================================================================
                 Mouse lemur  ======================================================================
                 Black lemur  ======================================================================
B D          Proboscis monkey  ======================================================================
B D                   Tarsier  ======================================================================
B D                 Armadillo  ======================================================================
B D                       Dog  ======================================================================

                        Human  ------------ctggtctcaaactcctgaccttaggtgatccacc
                        Chimp  ------------ctggtctcaaactcctgaccttaggtgatccacc
                       Bonobo  ------------ctggtctcaaactcctgaccttaggtgatccacc
                      Gorilla  ------------ctggtctcaaactcctgaccttaggtgatccacc
                    Orangutan  ------------ctggtctcaaactcctgaccttaggtgatccacc
                       Gibbon  ------------ctggtctcaaactcctgaccttaggtgatccacc
                       Rhesus  ------------ctggtctcaaactcttgaccttaggtgatccacc
          Crab-eating macaque  ------------ctggtctcaaactcttgaccttaggtgatccacc
           Pig-tailed macaque  ------------ctggtctcaaactcttgaccttaggtgatccacc
               Sooty mangabey  ------------ctggtctcaaactcttgaccttaggtgatccacc
                       Baboon  gagccaccgcgcccggcctcaaactcttgaccttaggtgatccacc
                 Green monkey  ------------ctggtctcaaactcttgaccttaggtgatccacc
                        Drill  ------------ctggtctcaaactcttgaccttaggtgatccacc
              Angolan colobus  ------------ctggtctcaaactcttgaccttaggtgatccacc
     Golden snub-nosed monkey  ------------ctggtctcaaactcttgaccttaggtgatccacc
      Black snub-nosed monkey  ------------ctggtctcaaactcttgaccttaggtgatccacc
                     Marmoset  ------------ctggtctcagactcctgaccttaggtgatccacc
              Squirrel monkey  ------------ctggtctcagactcctgaccttaggtgatccacc
          White-faced sapajou  ------------ctgatctcagactcctgaccttaggtgatccacc
            Ma's night monkey  ------------ctggtctcagactcctgaccttaggtgatccacc
                     Bushbaby  ------------ctggtttcaaactcct----------------cc
                        Mouse  ------------atgaccttaaactctttaatttagttagtacatt
              Sclater's lemur  ==============================================
            Coquerel's sifaka  ==============================================
                  Mouse lemur  ==============================================
                  Black lemur  ==============================================
             Proboscis monkey  ==============================================
                      Tarsier  ==============================================
                    Armadillo  ==============================================
                          Dog  ==============================================

Inserts between block 76 and 77 in window
B D                    Mouse 168bp

Alignment block 77 of 323 in window, 57800854 - 57800908, 55 bps 
B D                     Human  cgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccc
B D                     Chimp  cgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccc
B D                    Bonobo  cgccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggccc
B D                   Gorilla  cgccttggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccc
B D                 Orangutan  ggccttggcctcccaaagtgctgggattacaggcatgagccactgcgcccggccc
B D