Human Gene CDCA5 (uc001oco.3)

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Human Gene CDCA5 (uc001oco.3)

Description: Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit02-11-14-R.
Transcript (Including UTRs)
Position: hg19 chr11:64,834,081-64,835,205 Size: 1,125 Total Exon Count: 3 Strand: -

Page Index	Sequence and Links	Primers	Genetic Associations	CTD	RNA-Seq Expression
Microarray Expression	Other Species	mRNA Descriptions	Other Names	Model Information	Methods

Data last updated at UCSC: 2013-06-14

Sequence and Links to Tools and Databases

Genomic Sequence (chr11:64,834,081-64,835,205)			mRNA (may differ from genome)		No protein
Gene Sorter	Genome Browser	Other Species FASTA	Gene interactions	Table Schema	Ensembl
ExonPrimer	HGNC	PubMed

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

Genetic Association Studies of Complex Diseases and Disorders


	Genetic Association Database (archive): CDCA5 CDC HuGE Published Literature: CDCA5

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D016604 Aflatoxin B1 D001564 Benzo(a)pyrene D013749 Tetrachlorodibenzodioxin D014635 Valproic Acid C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide D000082 Acetaminophen D001151 Arsenic D002117 Calcitriol more ... click here to view the complete list

RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)


	Highest median expression: 25.69 RPKM in Cells - EBV-transformed lymphocytes Total median expression: 86.96 RPKM View in GTEx track of Genome Browser View at GTEx portal View GTEx Body Map

Microarray Expression Data


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Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog

Descriptions from all associated GenBank mRNAs


	AB231703 - Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit02-11-14-R.

Other Names for This Gene


	Alternate Gene Symbols: AB231703 UCSC ID: uc001oco.3 Representative RNA: AB231703

Gene Model Information

category:	noncoding	nonsense-mediated-decay:	no	RNA accession:	AB231703.1
exon count:	3	CDS single in 3' UTR:	no	RNA size:	217
ORF size:	0	CDS single in intron:	no	Alignment % ID:	100.00
txCdsPredict score:	324.00	frame shift in genome:	no	% Coverage:	100.00
has start codon:	no	stop codon in genome:	no	# of Alignments:	1
has end codon:	no	retained intron:	no	# AT/AC introns	0
selenocysteine:	no	end bleed into intron:	0	# strange splices:	0

Click here for a detailed description of the fields of the table above.

Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.