Human Gene UTP23 (uc003yoc.3)
Description: Homo sapiens UTP23, small subunit (SSU) processome component, homolog (yeast) (UTP23), mRNA.
Transcript (Including UTRs)
Position: hg19 chr8:117,778,742-117,786,921 Size: 8,180 Total Exon Count: 3 Strand: +
Coding Region
Position: hg19 chr8:117,778,843-117,784,081 Size: 5,239 Coding Exon Count: 3
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: UTP23_HUMAN
DESCRIPTION: RecName: Full=rRNA-processing protein UTP23 homolog;
FUNCTION: Involved in rRNA-processing and ribosome biogenesis (By similarity).SUBCELLULAR LOCATION: Nucleus, nucleolus (By similarity).SIMILARITY: Belongs to the UTP23/FCF1 family. UTP23 subfamily.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR006984 - DUF652
Pfam Domains: PF04900 - Fcf1
SCOP Domains: 88723 - PIN domain-like
ModBase Predicted Comparative 3D Structure on Q9BRU9
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC005955 - Homo sapiens UTP23, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:14595 IMAGE:4285502), complete cds.BC022441 - Homo sapiens UTP23, small subunit (SSU) processome component, homolog (yeast), mRNA (cDNA clone MGC:24779 IMAGE:4285036), complete cds.JD211791 - Sequence 192815 from Patent EP1572962.AK055279 - Homo sapiens cDNA FLJ30717 fis, clone FCBBF2001672.AK315770 - Homo sapiens cDNA, FLJ96884.JF432655 - Synthetic construct Homo sapiens clone IMAGE:100073893 UTP23, small subunit (SSU) processome component, homolog (yeast) (UTP23) gene, encodes complete protein.KJ899784 - Synthetic construct Homo sapiens clone ccsbBroadEn_09178 UTP23 gene, encodes complete protein.JD062387 - Sequence 43411 from Patent EP1572962.JD206599 - Sequence 187623 from Patent EP1572962.JD471987 - Sequence 453011 from Patent EP1572962.JD208753 - Sequence 189777 from Patent EP1572962.JD168580 - Sequence 149604 from Patent EP1572962.JD350212 - Sequence 331236 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B2RE25, C8orf53, NM_032334, NP_115710, Q96NJ8, Q9BRU9, UTP23_HUMANUCSC ID: uc003yoc.3RefSeq Accession: NM_032334
Protein: Q9BRU9
(aka UTP23_HUMAN)
CCDS: CCDS6320.1
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NM_032334.2
exon count:
3 CDS single in 3' UTR:
no
RNA size:
3693
ORF size:
750 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1679.50 frame shift in genome:
no
% Coverage:
99.95
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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