Human Gene C1orf109 (ENST00000358011.8) from GENCODE V44
Description: Homo sapiens chromosome 1 open reading frame 109 (C1orf109), transcript variant 3, mRNA. (from RefSeq NM_017850)
Gencode Transcript: ENST00000358011.8
Gencode Gene: ENSG00000116922.15
Transcript (Including UTRs)
Position: hg38 chr1:37,681,570-37,690,520 Size: 8,951 Total Exon Count: 5 Strand: -
Coding Region
Position: hg38 chr1:37,683,123-37,689,880 Size: 6,758 Coding Exon Count: 4
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CA109_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C1orf109;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on Q9NX04
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK000515 - Homo sapiens cDNA FLJ20508 fis, clone KAT09559.LF383906 - JP 2014500723-A/191409: Polycomb-Associated Non-Coding RNAs.MA619483 - JP 2018138019-A/191409: Polycomb-Associated Non-Coding RNAs.BC018109 - Homo sapiens chromosome 1 open reading frame 109, mRNA (cDNA clone MGC:8853 IMAGE:3914920), complete cds.AK092319 - Homo sapiens cDNA FLJ35000 fis, clone OCBBF2011872.AX747480 - Sequence 1005 from Patent EP1308459.BC063843 - Homo sapiens chromosome 1 open reading frame 109, mRNA (cDNA clone MGC:74978 IMAGE:6501461), complete cds.JD305097 - Sequence 286121 from Patent EP1572962.JD508608 - Sequence 489632 from Patent EP1572962.JD106934 - Sequence 87958 from Patent EP1572962.JD244927 - Sequence 225951 from Patent EP1572962.JD539080 - Sequence 520104 from Patent EP1572962.JD149998 - Sequence 131022 from Patent EP1572962.JD360229 - Sequence 341253 from Patent EP1572962.JD120357 - Sequence 101381 from Patent EP1572962.JD348965 - Sequence 329989 from Patent EP1572962.JD514673 - Sequence 495697 from Patent EP1572962.JD448897 - Sequence 429921 from Patent EP1572962.JD297375 - Sequence 278399 from Patent EP1572962.JD175077 - Sequence 156101 from Patent EP1572962.JD089360 - Sequence 70384 from Patent EP1572962.JD188034 - Sequence 169058 from Patent EP1572962.JD454893 - Sequence 435917 from Patent EP1572962.JD114568 - Sequence 95592 from Patent EP1572962.JD131312 - Sequence 112336 from Patent EP1572962.JD552982 - Sequence 534006 from Patent EP1572962.AK299377 - Homo sapiens cDNA FLJ55172 complete cds.LF356547 - JP 2014500723-A/164050: Polycomb-Associated Non-Coding RNAs.MA592124 - JP 2018138019-A/164050: Polycomb-Associated Non-Coding RNAs.JD092987 - Sequence 74011 from Patent EP1572962.JD446790 - Sequence 427814 from Patent EP1572962.LF356546 - JP 2014500723-A/164049: Polycomb-Associated Non-Coding RNAs.MA592123 - JP 2018138019-A/164049: Polycomb-Associated Non-Coding RNAs.JD282572 - Sequence 263596 from Patent EP1572962.JD110580 - Sequence 91604 from Patent EP1572962.JD530065 - Sequence 511089 from Patent EP1572962.JD355200 - Sequence 336224 from Patent EP1572962.JD195507 - Sequence 176531 from Patent EP1572962.JD532175 - Sequence 513199 from Patent EP1572962.AK316093 - Homo sapiens cDNA, FLJ78992 complete cds.JD550952 - Sequence 531976 from Patent EP1572962.CU687832 - Synthetic construct Homo sapiens gateway clone IMAGE:100022753 5' read C1orf109 mRNA.HQ447505 - Synthetic construct Homo sapiens clone IMAGE:100070842; CCSB014291_01 chromosome 1 open reading frame 109 (C1orf109) gene, encodes complete protein.KJ904786 - Synthetic construct Homo sapiens clone ccsbBroadEn_14180 C1orf109 gene, encodes complete protein.JD085521 - Sequence 66545 from Patent EP1572962.AK056029 - Homo sapiens cDNA FLJ31467 fis, clone NT2NE2001397.JD566570 - Sequence 547594 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: CA109_HUMAN, D3DPT1, ENST00000358011.1, ENST00000358011.2, ENST00000358011.3, ENST00000358011.4, ENST00000358011.5, ENST00000358011.6, ENST00000358011.7, NM_017850, Q8WVD1, Q9NX04, uc001cbp.1, uc001cbp.2, uc001cbp.3UCSC ID: ENST00000358011.8RefSeq Accession: NM_017850
Protein: Q9NX04
(aka CA109_HUMAN)
CCDS: CCDS423.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.