Human Gene CHRM5 (ENST00000383263.7) from GENCODE V44
  Description: Homo sapiens cholinergic receptor muscarinic 5 (CHRM5), transcript variant 1, mRNA. (from RefSeq NM_012125)
RefSeq Summary (NM_012125): The muscarinic cholinergic receptors belong to a larger family of G protein-coupled receptors. The functional diversity of these receptors is defined by the binding of acetylcholine and includes cellular responses such as adenylate cyclase inhibition, phosphoinositide degeneration, and potassium channel mediation. Muscarinic receptors influence many effects of acetylcholine in the central and peripheral nervous system. The clinical implications of this receptor are unknown; however, stimulation of this receptor is known to increase cyclic AMP levels. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000383263.7
Gencode Gene: ENSG00000184984.10
Transcript (Including UTRs)
   Position: hg38 chr15:33,968,497-34,067,458 Size: 98,962 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr15:34,062,718-34,064,316 Size: 1,599 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:33,968,497-34,067,458)mRNA (may differ from genome)Protein (532 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACM5_HUMAN
DESCRIPTION: RecName: Full=Muscarinic acetylcholine receptor M5;
FUNCTION: The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins. Primary transducing effect is Pi turnover.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family. Muscarinic acetylcholine receptor subfamily. CHRM5 sub-subfamily.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.24 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 7.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -250.701061-0.236 Picture PostScript Text
3' UTR -921.103142-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR000502 - Musac_M5_rcpt
IPR000995 - Musac_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

ModBase Predicted Comparative 3D Structure on P08912
FrontTopSide
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004435 phosphatidylinositol phospholipase C activity
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0016907 G-protein coupled acetylcholine receptor activity

Biological Process:
GO:0001696 gastric acid secretion
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007197 adenylate cyclase-inhibiting G-protein coupled acetylcholine receptor signaling pathway
GO:0007207 phospholipase C-activating G-protein coupled acetylcholine receptor signaling pathway
GO:0007213 G-protein coupled acetylcholine receptor signaling pathway
GO:0007271 synaptic transmission, cholinergic
GO:0008283 cell proliferation
GO:0015872 dopamine transport
GO:0019226 transmission of nerve impulse
GO:0060304 regulation of phosphatidylinositol dephosphorylation

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030054 cell junction
GO:0045202 synapse
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  AK095198 - Homo sapiens cDNA FLJ37879 fis, clone BRSTN2000070, highly similar to MUSCARINIC ACETYLCHOLINE RECEPTOR M5.
AB084282 - Homo sapiens mACHR for muscarinic acetylcholine receptor M5, complete cds.
BC041805 - Homo sapiens cholinergic receptor, muscarinic 5, mRNA (cDNA clone MGC:41838 IMAGE:5298446), complete cds.
BC068528 - Homo sapiens cholinergic receptor, muscarinic 5, mRNA (cDNA clone MGC:87358 IMAGE:30339053), complete cds.
JD188707 - Sequence 169731 from Patent EP1572962.
JD359776 - Sequence 340800 from Patent EP1572962.
CU686659 - Synthetic construct Homo sapiens gateway clone IMAGE:100022957 5' read CHRM5 mRNA.
AF385591 - Homo sapiens m5 muscarinic cholinergic receptor (CHRM5) mRNA, complete cds.
GQ129426 - Synthetic construct Homo sapiens clone HAIB:100068496; DKFZo004E0234 cholinergic receptor, muscarinic 5 protein (CHRM5) gene, partial cds.
JF432772 - Synthetic construct Homo sapiens clone IMAGE:100074016 cholinergic receptor, muscarinic 5 (CHRM5) gene, encodes complete protein.
KJ896604 - Synthetic construct Homo sapiens clone ccsbBroadEn_05998 CHRM5 gene, encodes complete protein.
KJ896605 - Synthetic construct Homo sapiens clone ccsbBroadEn_05999 CHRM5 gene, encodes complete protein.
AF026263 - Homo sapiens muscarinic receptor (CHRM5) mRNA, complete cds.
AF498919 - Homo sapiens muscarinic acetylcholine receptor M5 (CHRM5) mRNA, complete cds.
EU832806 - Synthetic construct Homo sapiens clone HAIB:100067835; DKFZo008E0233 cholinergic receptor, muscarinic 5 protein (CHRM5) gene, encodes complete protein.
JD449388 - Sequence 430412 from Patent EP1572962.
JD445056 - Sequence 426080 from Patent EP1572962.
JD394144 - Sequence 375168 from Patent EP1572962.
JD232632 - Sequence 213656 from Patent EP1572962.
JD284447 - Sequence 265471 from Patent EP1572962.
JD516127 - Sequence 497151 from Patent EP1572962.
JD494560 - Sequence 475584 from Patent EP1572962.
JD247505 - Sequence 228529 from Patent EP1572962.
JD263098 - Sequence 244122 from Patent EP1572962.
JD384725 - Sequence 365749 from Patent EP1572962.
JD283395 - Sequence 264419 from Patent EP1572962.
JD347316 - Sequence 328340 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04020 - Calcium signaling pathway
hsa04080 - Neuroactive ligand-receptor interaction
hsa04810 - Regulation of actin cytoskeleton

Reactome (by CSHL, EBI, and GO)

Protein P08912 (Reactome details) participates in the following event(s):

R-HSA-390649 M1, M3 and M5 receptors bind acetylcholine
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-390648 Muscarinic acetylcholine receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-375280 Amine ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ACM5_HUMAN, ENST00000383263.1, ENST00000383263.2, ENST00000383263.3, ENST00000383263.4, ENST00000383263.5, ENST00000383263.6, NM_012125, P08912, Q96RG7, uc001zhk.1, uc001zhk.2, uc001zhk.3
UCSC ID: ENST00000383263.7
RefSeq Accession: NM_012125
Protein: P08912 (aka ACM5_HUMAN)
CCDS: CCDS10031.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.