Human Gene MLST8 (ENST00000564088.5) from GENCODE V44
  Description: Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1- mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient- poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum- induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'. (from UniProt Q9BVC4)
Gencode Transcript: ENST00000564088.5
Gencode Gene: ENSG00000167965.18
Transcript (Including UTRs)
   Position: hg38 chr16:2,205,177-2,209,396 Size: 4,220 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg38 chr16:2,206,086-2,208,877 Size: 2,792 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:2,205,177-2,209,396)mRNA (may differ from genome)Protein (326 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
HPRDLynxMalacardsMGIneXtProtPubMed
ReactomeUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: LST8_HUMAN
DESCRIPTION: RecName: Full=Target of rapamycin complex subunit LST8; Short=TORC subunit LST8; AltName: Full=G protein beta subunit-like; Short=Gable; Short=Protein GbetaL; AltName: Full=Mammalian lethal with SEC13 protein 8; Short=mLST8;
FUNCTION: Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1- mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient- poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum- induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.
SUBUNIT: Part of the mammalian target of rapamycin complex 1 (mTORC1) which contains MTOR, MLST8, RPTOR, AKT1S1/PRAS40 and DEPTOR. mTORC1 binds to and is inhibited by FKBP12-rapamycin. Part of the mammalian target of rapamycin complex 2 (mTORC2) which contains MTOR, MLST8, PRR5, RICTOR, MAPKAP1 and DEPTOR. Contrary to mTORC1, mTORC2 does not bind to and is not sensitive to FKBP12- rapamycin. Interacts directly with MTOR and RPTOR. Interacts with RHEB.
INTERACTION: P42345:MTOR; NbExp=4; IntAct=EBI-1387471, EBI-359260; Q8N122:RPTOR; NbExp=3; IntAct=EBI-1387471, EBI-1567928;
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Broadly expressed, with highest levels in skeletal muscle, heart and kidney.
SIMILARITY: Belongs to the WD repeat LST8 family.
SIMILARITY: Contains 7 WD repeats.
SEQUENCE CAUTION: Sequence=EAW85539.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: MLST8
Diseases sorted by gene-association score: benign familial neonatal epilepsy (2), childhood absence epilepsy (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.57 RPKM in Brain - Cerebellum
Total median expression: 409.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -161.20361-0.447 Picture PostScript Text
3' UTR -244.60519-0.471 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020472 - G-protein_beta_WD-40_rep
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

ModBase Predicted Comparative 3D Structure on Q9BVC4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0043539 protein serine/threonine kinase activator activity

Biological Process:
GO:0007050 cell cycle arrest
GO:0016241 regulation of macroautophagy
GO:0030838 positive regulation of actin filament polymerization
GO:0031929 TOR signaling
GO:0032008 positive regulation of TOR signaling
GO:0032148 activation of protein kinase B activity
GO:0032956 regulation of actin cytoskeleton organization
GO:0038202 TORC1 signaling
GO:0043087 regulation of GTPase activity
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0071902 positive regulation of protein serine/threonine kinase activity
GO:1900034 regulation of cellular response to heat

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0031931 TORC1 complex
GO:0031932 TORC2 complex


-  Descriptions from all associated GenBank mRNAs
  KJ903068 - Synthetic construct Homo sapiens clone ccsbBroadEn_12462 MLST8 gene, encodes complete protein.
KJ894543 - Synthetic construct Homo sapiens clone ccsbBroadEn_03937 MLST8 gene, encodes complete protein.
AK021536 - Homo sapiens cDNA FLJ11474 fis, clone HEMBA1001723, highly similar to Homo sapiens G protein beta subunit-like (GBL), mRNA.
AK098762 - Homo sapiens cDNA FLJ25896 fis, clone CBR03713, highly similar to Mus musculus G beta-like protein GBL mRNA.
AY223837 - Homo sapiens LST8 mRNA, complete cds.
LF210723 - JP 2014500723-A/18226: Polycomb-Associated Non-Coding RNAs.
MA446300 - JP 2018138019-A/18226: Polycomb-Associated Non-Coding RNAs.
AK304390 - Homo sapiens cDNA FLJ58875 complete cds, highly similar to Homo sapiens G protein beta subunit-like (GBL), mRNA.
AK302201 - Homo sapiens cDNA FLJ57229 complete cds, highly similar to Homo sapiens G protein beta subunit-like (GBL), mRNA.
BC088354 - Homo sapiens G protein beta subunit-like, mRNA (cDNA clone MGC:111011 IMAGE:6168345), complete cds.
BC052292 - Homo sapiens G protein beta subunit-like, mRNA (cDNA clone MGC:59647 IMAGE:5926090), complete cds.
BC001313 - Homo sapiens G protein beta subunit-like, mRNA (cDNA clone MGC:5518 IMAGE:3454025), complete cds.
BC020499 - Homo sapiens G protein beta subunit-like, mRNA (cDNA clone IMAGE:3903638), with apparent retained intron.
AK022227 - Homo sapiens cDNA FLJ12165 fis, clone MAMMA1000612, moderately similar to Homo sapiens G protein beta subunit mRNA.
BC017119 - Homo sapiens G protein beta subunit-like, mRNA (cDNA clone MGC:17904 IMAGE:3910883), complete cds.
DQ894803 - Synthetic construct Homo sapiens clone IMAGE:100009263; FLH178613.01L; RZPDo839F02127D G protein beta subunit-like (GBL) gene, encodes complete protein.
EU176591 - Synthetic construct Homo sapiens clone IMAGE:100011598; FLH263674.01L; RZPDo839H02254D G protein beta subunit-like (GBL) gene, encodes complete protein.
DQ891611 - Synthetic construct clone IMAGE:100004241; FLH178617.01X; RZPDo839F02128D G protein beta subunit-like (GBL) gene, encodes complete protein.
CU677841 - Synthetic construct Homo sapiens gateway clone IMAGE:100018953 5' read GBL mRNA.
AF195883 - Homo sapiens G protein beta subunit mRNA, partial cds.
AK123195 - Homo sapiens cDNA FLJ41201 fis, clone BRACE2047558, highly similar to Homo sapiens G protein beta subunit mRNA.
LF340703 - JP 2014500723-A/148206: Polycomb-Associated Non-Coding RNAs.
MA576280 - JP 2018138019-A/148206: Polycomb-Associated Non-Coding RNAs.
DQ579841 - Homo sapiens piRNA piR-47953, complete sequence.
JD525462 - Sequence 506486 from Patent EP1572962.
JD152853 - Sequence 133877 from Patent EP1572962.
JD233418 - Sequence 214442 from Patent EP1572962.
JD189313 - Sequence 170337 from Patent EP1572962.
JD109333 - Sequence 90357 from Patent EP1572962.
JD548917 - Sequence 529941 from Patent EP1572962.
JD392003 - Sequence 373027 from Patent EP1572962.
JD215099 - Sequence 196123 from Patent EP1572962.
JD055541 - Sequence 36565 from Patent EP1572962.
JD552950 - Sequence 533974 from Patent EP1572962.
JD090299 - Sequence 71323 from Patent EP1572962.
JD051555 - Sequence 32579 from Patent EP1572962.
JD174680 - Sequence 155704 from Patent EP1572962.
JD060699 - Sequence 41723 from Patent EP1572962.
JD200748 - Sequence 181772 from Patent EP1572962.
JD123075 - Sequence 104099 from Patent EP1572962.
JD110352 - Sequence 91376 from Patent EP1572962.
JD269818 - Sequence 250842 from Patent EP1572962.
JD519880 - Sequence 500904 from Patent EP1572962.
JD519881 - Sequence 500905 from Patent EP1572962.
JD092764 - Sequence 73788 from Patent EP1572962.
JD483859 - Sequence 464883 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04150 - mTOR signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein Q9BVC4 (Reactome details) participates in the following event(s):

R-HSA-5653968 Ragulator:Rag dimers:SLC38A9 bind mTORC1
R-HSA-198640 TORC2 (mTOR) phosphorylates AKT at S473
R-HSA-2243938 AKT1 E17K mutant is phosphorylated by TORC2 complex
R-HSA-6795290 TORC2 complex phosphorylates SGK1
R-HSA-165680 Formation of active mTORC1 complex
R-HSA-380979 RHEB in mTORC1:RHEB:GTP hydrolyses GTP
R-HSA-447074 AMPK phosphorylates Raptor in the mTORC1 complex
R-HSA-5672843 AKT1S1 (PRAS40) binds mTORC1
R-HSA-5672017 Rheb in the mTORC1 complex hydrolyses GTP
R-HSA-5672817 Active mTORC1 binds the ULK1 complex
R-HSA-5675790 mTORC1 dissociates from ULK complex
R-HSA-5082405 Phosphorylation of HSF1 at Ser326 induces transactivation
R-HSA-5672824 Phosphorylated AKT1S1:mTORC1 binds YWHAB
R-HSA-377186 Activated Akt1 phosphorylates AKT1S1 (PRAS40)
R-HSA-165692 Phosphorylation of 4E-BP1 by activated mTORC1
R-HSA-165718 mTORC1 phosphorylation of RPS6KB1 (S6K)
R-HSA-5672010 Active mTORC1 phosphorylates ULK1
R-HSA-5673768 p-AMPK:AMP phosphorylates Raptor in the mTORC1 complex
R-HSA-8944454 mTORC1 phosphorylates MAF1
R-HSA-5672828 mTORC1 phosphorylates AKT1S1
R-HSA-165159 mTOR signalling
R-HSA-389357 CD28 dependent PI3K/Akt signaling
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-5218920 VEGFR2 mediated vascular permeability
R-HSA-5674400 Constitutive Signaling by AKT1 E17K in Cancer
R-HSA-6804757 Regulation of TP53 Degradation
R-HSA-162582 Signal Transduction
R-HSA-389356 CD28 co-stimulation
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-2219528 PI3K/AKT Signaling in Cancer
R-HSA-6806003 Regulation of TP53 Expression and Degradation
R-HSA-380972 Energy dependent regulation of mTOR by LKB1-AMPK
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-1632852 Macroautophagy
R-HSA-3371571 HSF1-dependent transactivation
R-HSA-388841 Costimulation by the CD28 family
R-HSA-194138 Signaling by VEGF
R-HSA-5663202 Diseases of signal transduction
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-166208 mTORC1-mediated signalling
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-8943724 Regulation of PTEN gene transcription
R-HSA-3371556 Cellular response to heat stress
R-HSA-1280218 Adaptive Immune System
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-1643685 Disease
R-HSA-212436 Generic Transcription Pathway
R-HSA-6807070 PTEN Regulation
R-HSA-2262752 Cellular responses to stress
R-HSA-168256 Immune System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: AK021536, B3KMM4, B4DY00, D3DU88, ENST00000564088.1, ENST00000564088.2, ENST00000564088.3, ENST00000564088.4, GBL, LST8, LST8_HUMAN, Q5M800, Q86Y18, Q8WUI5, Q9BVC4, Q9HA66, Q9UJV6, uc002cpc.1, uc002cpc.2, uc002cpc.3, uc002cpc.4
UCSC ID: ENST00000564088.5
RefSeq Accession: NM_001199173
Protein: Q9BVC4 (aka LST8_HUMAN)
CCDS: CCDS10462.2, CCDS58409.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.