Human Gene PLIN4 (ENST00000301286.5) from GENCODE V44
  Description: May play a role in triacylglycerol packaging into adipocytes. May function as a coat protein involved in the biogenesis of lipid droplets (By similarity). (from UniProt Q96Q06)
RefSeq Summary (NM_001367868): Members of the perilipin family, such as PLIN4, coat intracellular lipid storage droplets (Wolins et al., 2003 [PubMed 12840023]).[supplied by OMIM, Feb 2010]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Gencode Transcript: ENST00000301286.5
Gencode Gene: ENSG00000167676.5
Transcript (Including UTRs)
   Position: hg38 chr19:4,502,192-4,518,486 Size: 16,295 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg38 chr19:4,504,459-4,518,272 Size: 13,814 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:4,502,192-4,518,486)mRNA (may differ from genome)Protein (1371 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
HPRDMalacardsMGIneXtProtPubMedUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: PLIN4_HUMAN
DESCRIPTION: RecName: Full=Perilipin-4; AltName: Full=Adipocyte protein S3-12;
FUNCTION: May play a role in triacylglycerol packaging into adipocytes. May function as a coat protein involved in the biogenesis of lipid droplets (By similarity).
SUBCELLULAR LOCATION: Cell membrane (By similarity). Cytoplasm (By similarity). Lipid droplet (By similarity). Note=Nascent lipid droplet surface-associated; association with lipid droplets is triacylglycerol synthesis-dependent (By similarity).
INDUCTION: Up-regulated during adipocyte differentiation.
SIMILARITY: Belongs to the perilipin family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 234.41 RPKM in Adipose - Subcutaneous
Total median expression: 808.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.20119-0.405 Picture PostScript Text
3' UTR -1020.602267-0.450 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004279 - Perilipin

Pfam Domains:
PF03036 - Perilipin family

ModBase Predicted Comparative 3D Structure on Q96Q06
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005737 cytoplasm
GO:0005811 lipid particle
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AB067468 - Homo sapiens mRNA for KIAA1881 protein, partial cds.
JD190931 - Sequence 171955 from Patent EP1572962.
JD210266 - Sequence 191290 from Patent EP1572962.
JD117572 - Sequence 98596 from Patent EP1572962.
JD297138 - Sequence 278162 from Patent EP1572962.
JD124727 - Sequence 105751 from Patent EP1572962.
JD262412 - Sequence 243436 from Patent EP1572962.
JD135607 - Sequence 116631 from Patent EP1572962.
JD507779 - Sequence 488803 from Patent EP1572962.
JD393579 - Sequence 374603 from Patent EP1572962.
JD186714 - Sequence 167738 from Patent EP1572962.
JD439866 - Sequence 420890 from Patent EP1572962.
JD422841 - Sequence 403865 from Patent EP1572962.
JD197976 - Sequence 179000 from Patent EP1572962.
JD422840 - Sequence 403864 from Patent EP1572962.
JD135445 - Sequence 116469 from Patent EP1572962.
JD076131 - Sequence 57155 from Patent EP1572962.
JD256705 - Sequence 237729 from Patent EP1572962.
JD466086 - Sequence 447110 from Patent EP1572962.
JD020864 - Sequence 1888 from Patent EP1572962.
JD030346 - Sequence 11370 from Patent EP1572962.
JD056634 - Sequence 37658 from Patent EP1572962.
JD141686 - Sequence 122710 from Patent EP1572962.
JD226784 - Sequence 207808 from Patent EP1572962.
JD373662 - Sequence 354686 from Patent EP1572962.
JD470739 - Sequence 451763 from Patent EP1572962.
JD408459 - Sequence 389483 from Patent EP1572962.
JD361754 - Sequence 342778 from Patent EP1572962.
JD484759 - Sequence 465783 from Patent EP1572962.
JD329352 - Sequence 310376 from Patent EP1572962.
JD382231 - Sequence 363255 from Patent EP1572962.
JD041524 - Sequence 22548 from Patent EP1572962.
JD457069 - Sequence 438093 from Patent EP1572962.
JD138560 - Sequence 119584 from Patent EP1572962.
JD372449 - Sequence 353473 from Patent EP1572962.
JD457068 - Sequence 438092 from Patent EP1572962.
JD341487 - Sequence 322511 from Patent EP1572962.
JD452988 - Sequence 434012 from Patent EP1572962.
JD073823 - Sequence 54847 from Patent EP1572962.
JD131825 - Sequence 112849 from Patent EP1572962.
JD139725 - Sequence 120749 from Patent EP1572962.
JD520359 - Sequence 501383 from Patent EP1572962.
JD147054 - Sequence 128078 from Patent EP1572962.
JD097995 - Sequence 79019 from Patent EP1572962.
JD209970 - Sequence 190994 from Patent EP1572962.
JD323145 - Sequence 304169 from Patent EP1572962.
JD115418 - Sequence 96442 from Patent EP1572962.
JD200411 - Sequence 181435 from Patent EP1572962.
JD040199 - Sequence 21223 from Patent EP1572962.
JD189171 - Sequence 170195 from Patent EP1572962.
JD085784 - Sequence 66808 from Patent EP1572962.
JD059991 - Sequence 41015 from Patent EP1572962.
JD437877 - Sequence 418901 from Patent EP1572962.
JD302241 - Sequence 283265 from Patent EP1572962.
JD291702 - Sequence 272726 from Patent EP1572962.
JD231464 - Sequence 212488 from Patent EP1572962.
JD497121 - Sequence 478145 from Patent EP1572962.
JD258701 - Sequence 239725 from Patent EP1572962.
JD334162 - Sequence 315186 from Patent EP1572962.
JD319149 - Sequence 300173 from Patent EP1572962.
JD414026 - Sequence 395050 from Patent EP1572962.
JD194504 - Sequence 175528 from Patent EP1572962.
JD395691 - Sequence 376715 from Patent EP1572962.
BC153818 - Homo sapiens KIAA1881, mRNA (cDNA clone IMAGE:40025780), partial cds.
AK295236 - Homo sapiens cDNA FLJ59021 complete cds, moderately similar to Mus musculus plasma membrane associated protein, S3-12 (S3-12), mRNA.
JD247982 - Sequence 229006 from Patent EP1572962.
JD272049 - Sequence 253073 from Patent EP1572962.
JD192729 - Sequence 173753 from Patent EP1572962.
JD225526 - Sequence 206550 from Patent EP1572962.
JD023119 - Sequence 4143 from Patent EP1572962.
JD035720 - Sequence 16744 from Patent EP1572962.
JD019475 - Sequence 499 from Patent EP1572962.
JD376619 - Sequence 357643 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NEI2, ENST00000301286.1, ENST00000301286.2, ENST00000301286.3, ENST00000301286.4, KIAA1881, NM_001393891, PLIN4_HUMAN, Q96Q06, uc002mar.1, uc002mar.2, uc002mar.3, uc002mar.4
UCSC ID: ENST00000301286.5
RefSeq Accession: NM_001367868
Protein: Q96Q06 (aka PLIN4_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.