Human Gene CRIM1 (ENST00000280527.7) from GENCODE V44
  Description: Homo sapiens cysteine rich transmembrane BMP regulator 1 (CRIM1), mRNA. (from RefSeq NM_016441)
RefSeq Summary (NM_016441): This gene encodes a transmembrane protein containing six cysteine-rich repeat domains and an insulin-like growth factor-binding domain. The encoded protein may play a role in tissue development though interactions with members of the transforming growth factor beta family, such as bone morphogenetic proteins. [provided by RefSeq, Nov 2010].
Gencode Transcript: ENST00000280527.7
Gencode Gene: ENSG00000150938.10
Transcript (Including UTRs)
   Position: hg38 chr2:36,355,778-36,551,135 Size: 195,358 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg38 chr2:36,356,293-36,548,701 Size: 192,409 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:36,355,778-36,551,135)mRNA (may differ from genome)Protein (1036 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CRIM1_HUMAN
DESCRIPTION: RecName: Full=Cysteine-rich motor neuron 1 protein; Short=CRIM-1; AltName: Full=Cysteine-rich repeat-containing protein S52; Contains: RecName: Full=Processed cysteine-rich motor neuron 1 protein; Flags: Precursor;
FUNCTION: May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. May play a role in capillary formation and maintenance during angiogenesis. Modulates BMP activity by affecting its processing and delivery to the cell surface.
SUBUNIT: Interacts with BMP4 and BMP7.
SUBCELLULAR LOCATION: Processed cysteine-rich motor neuron 1 protein: Secreted.
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
TISSUE SPECIFICITY: Expressed in pancreas, kidney, skeletal muscle, lung, placenta, brain, heart, spleen, liver and small intestine. Expressed in blood vessels (at protein level).
PTM: N-glycosylated.
SIMILARITY: Contains 4 antistasin-like domains.
SIMILARITY: Contains 1 IGFBP N-terminal domain.
SIMILARITY: Contains 6 VWFC domains.
SEQUENCE CAUTION: Sequence=BAD92376.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CRIM1
Diseases sorted by gene-association score: macrophthalmia, colobomatous, with microcornea* (350)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 86.91 RPKM in Cells - Cultured fibroblasts
Total median expression: 949.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -317.80515-0.617 Picture PostScript Text
3' UTR -622.802434-0.256 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000867 - IGFBP-like
IPR011061 - Prot_inh_I14/15_hirudin/antisn
IPR018112 - Prot_inh_I15_antistasin
IPR004094 - Prot_inh_I15_antistasin-like
IPR001007 - VWF_C

Pfam Domains:
PF02822 - Antistasin family
PF00093 - von Willebrand factor type C domain

ModBase Predicted Comparative 3D Structure on Q9NZV1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl WormBase 
Protein SequenceProtein SequenceProtein Sequence Protein Sequence 
AlignmentAlignmentAlignment Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004857 enzyme inhibitor activity
GO:0004867 serine-type endopeptidase inhibitor activity
GO:0005010 insulin-like growth factor-activated receptor activity
GO:0005520 insulin-like growth factor binding
GO:0030165 PDZ domain binding

Biological Process:
GO:0001558 regulation of cell growth
GO:0007399 nervous system development
GO:0010951 negative regulation of endopeptidase activity
GO:0043086 negative regulation of catalytic activity
GO:0048009 insulin-like growth factor receptor signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  KJ904750 - Synthetic construct Homo sapiens clone ccsbBroadEn_14144 CRIM1-like gene, encodes complete protein.
AY358371 - Homo sapiens clone DNA90842 CRIM1 (UNQ1886) mRNA, complete cds.
AB209139 - Homo sapiens mRNA for cysteine-rich motor neuron 1 variant protein.
AF167706 - Homo sapiens cysteine-rich repeat-containing protein S52 precursor, mRNA, complete cds.
BC111989 - Homo sapiens cysteine rich transmembrane BMP regulator 1 (chordin-like), mRNA (cDNA clone MGC:138194 IMAGE:8327457), complete cds.
BC113371 - Homo sapiens cysteine rich transmembrane BMP regulator 1 (chordin-like), mRNA (cDNA clone MGC:141931 IMAGE:8322423), complete cds.
AB384861 - Synthetic construct DNA, clone: pF1KB3824, Homo sapiens CRIM1 gene for cysteine-rich motor neuron 1 protein precursor, complete cds, without stop codon, in Flexi system.
LF212712 - JP 2014500723-A/20215: Polycomb-Associated Non-Coding RNAs.
MA448289 - JP 2018138019-A/20215: Polycomb-Associated Non-Coding RNAs.
JD461129 - Sequence 442153 from Patent EP1572962.
JD178373 - Sequence 159397 from Patent EP1572962.
BX648755 - Homo sapiens mRNA; cDNA DKFZp686L12169 (from clone DKFZp686L12169).
AK300817 - Homo sapiens cDNA FLJ51320 complete cds, highly similar to Cysteine-rich motor neuron 1 protein precursor.
CR627451 - Homo sapiens mRNA; cDNA DKFZp686O14117 (from clone DKFZp686O14117).
JD566248 - Sequence 547272 from Patent EP1572962.
BC026227 - Homo sapiens cysteine rich transmembrane BMP regulator 1 (chordin-like), mRNA (cDNA clone IMAGE:4447111).
JD175561 - Sequence 156585 from Patent EP1572962.
JD276762 - Sequence 257786 from Patent EP1572962.
JD426850 - Sequence 407874 from Patent EP1572962.
JD061952 - Sequence 42976 from Patent EP1572962.
JD385938 - Sequence 366962 from Patent EP1572962.
JD091300 - Sequence 72324 from Patent EP1572962.
JD565269 - Sequence 546293 from Patent EP1572962.
JD285197 - Sequence 266221 from Patent EP1572962.
JD495299 - Sequence 476323 from Patent EP1572962.
JD438197 - Sequence 419221 from Patent EP1572962.
JD557813 - Sequence 538837 from Patent EP1572962.
JD530696 - Sequence 511720 from Patent EP1572962.
JD525010 - Sequence 506034 from Patent EP1572962.
JD434802 - Sequence 415826 from Patent EP1572962.
JD309185 - Sequence 290209 from Patent EP1572962.
JD375088 - Sequence 356112 from Patent EP1572962.
JD244333 - Sequence 225357 from Patent EP1572962.
JD159124 - Sequence 140148 from Patent EP1572962.
JD502972 - Sequence 483996 from Patent EP1572962.
AK026159 - Homo sapiens cDNA: FLJ22506 fis, clone HRC11695.
JD362195 - Sequence 343219 from Patent EP1572962.
JD510986 - Sequence 492010 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CRIM1_HUMAN, ENST00000280527.1, ENST00000280527.2, ENST00000280527.3, ENST00000280527.4, ENST00000280527.5, ENST00000280527.6, NM_016441, Q2M2G4, Q59GH0, Q7LCQ5, Q9H318, Q9NZV1, S52, uc002rpd.1, uc002rpd.2, uc002rpd.3, uc002rpd.4, uc002rpd.5, UNQ1886/PRO4330
UCSC ID: ENST00000280527.7
RefSeq Accession: NM_016441
Protein: Q9NZV1 (aka CRIM1_HUMAN)
CCDS: CCDS1783.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.