Human Gene CFAP298 (ENST00000290155.8) from GENCODE V44
  Description: Homo sapiens cilia and flagella associated protein 298 (CFAP298), transcript variant 1, mRNA. (from RefSeq NM_021254)
RefSeq Summary (NM_021254): This gene encodes a protein that plays a critical role in dynein arm assembly and motile cilia function. Mutations in this gene result in primary ciliary dyskinesia. Naturally occuring readthrough transcription occurs from this locus to the downstream t-complex 10 like (TCP10L) gene. [provided by RefSeq, Apr 2017].
Gencode Transcript: ENST00000290155.8
Gencode Gene: ENSG00000159079.19
Transcript (Including UTRs)
   Position: hg38 chr21:32,599,354-32,612,377 Size: 13,024 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg38 chr21:32,601,863-32,612,243 Size: 10,381 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
GeneReviewsMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr21:32,599,354-32,612,377)mRNA (may differ from genome)Protein (290 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsHPRD
MalacardsMGIneXtProtOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CU059_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C21orf59;
SIMILARITY: To D.melanogaster CG18675.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.52 RPKM in Testis
Total median expression: 3.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.30134-0.457 Picture PostScript Text
3' UTR -797.502509-0.318 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021298 - DUF2870

Pfam Domains:
PF11069 - Protein of unknown function (DUF2870)

ModBase Predicted Comparative 3D Structure on P57076
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0003352 regulation of cilium movement
GO:0048858 cell projection morphogenesis
GO:0060271 cilium assembly

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005929 cilium
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  DQ655907 - Homo sapiens clone UGL9a12, mRNA sequence.
DQ655908 - Homo sapiens clone UGL9b12, mRNA sequence.
DQ656039 - Homo sapiens clone UGLsupplB, mRNA sequence.
LF210665 - JP 2014500723-A/18168: Polycomb-Associated Non-Coding RNAs.
MA446242 - JP 2018138019-A/18168: Polycomb-Associated Non-Coding RNAs.
AK223318 - Homo sapiens mRNA for chromosome 21 open reading frame 59 variant, clone: TMS07327.
AK225697 - Homo sapiens mRNA for Hypothetical protein FLJ30766 variant, clone: TMS03758.
AK098577 - Homo sapiens cDNA FLJ25711 fis, clone TST04991.
AF282851 - Homo sapiens C21orf59 mRNA, complete cds.
BC000709 - Homo sapiens chromosome 21 open reading frame 59, mRNA (cDNA clone MGC:1040 IMAGE:3504049), complete cds.
AK000474 - Homo sapiens cDNA FLJ20467 fis, clone KAT06638.
FJ649644 - Homo sapiens prostate cancer upregulated protein 1 mRNA, complete cds.
JD356986 - Sequence 338010 from Patent EP1572962.
JD183364 - Sequence 164388 from Patent EP1572962.
JD333568 - Sequence 314592 from Patent EP1572962.
AK097566 - Homo sapiens cDNA FLJ40247 fis, clone TESTI2024090.
AK094456 - Homo sapiens cDNA FLJ37137 fis, clone BRACE2023540.
AK055328 - Homo sapiens cDNA FLJ30766 fis, clone FEBRA2000680.
JD287276 - Sequence 268300 from Patent EP1572962.
HQ447226 - Synthetic construct Homo sapiens clone IMAGE:100070528; CCSB003442_01 chromosome 21 open reading frame 59 (C21orf59) gene, encodes complete protein.
KJ894347 - Synthetic construct Homo sapiens clone ccsbBroadEn_03741 C21orf59 gene, encodes complete protein.
CU674350 - Synthetic construct Homo sapiens gateway clone IMAGE:100018077 5' read C21orf59 mRNA.
LF339888 - JP 2014500723-A/147391: Polycomb-Associated Non-Coding RNAs.
MA575465 - JP 2018138019-A/147391: Polycomb-Associated Non-Coding RNAs.
JD375638 - Sequence 356662 from Patent EP1572962.
AK300970 - Homo sapiens cDNA FLJ52906 complete cds.
LF339889 - JP 2014500723-A/147392: Polycomb-Associated Non-Coding RNAs.
MA575466 - JP 2018138019-A/147392: Polycomb-Associated Non-Coding RNAs.
JD502646 - Sequence 483670 from Patent EP1572962.
LF339890 - JP 2014500723-A/147393: Polycomb-Associated Non-Coding RNAs.
MA575467 - JP 2018138019-A/147393: Polycomb-Associated Non-Coding RNAs.
JD197618 - Sequence 178642 from Patent EP1572962.
LF339891 - JP 2014500723-A/147394: Polycomb-Associated Non-Coding RNAs.
MA575468 - JP 2018138019-A/147394: Polycomb-Associated Non-Coding RNAs.
JD031508 - Sequence 12532 from Patent EP1572962.
JD021167 - Sequence 2191 from Patent EP1572962.
JD024183 - Sequence 5207 from Patent EP1572962.
JD024184 - Sequence 5208 from Patent EP1572962.
JD028467 - Sequence 9491 from Patent EP1572962.
AL355729 - Homo sapiens EST from clone 591914, 5' end.
JD240084 - Sequence 221108 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C21orf48, C21orf59, CU059_HUMAN, ENST00000290155.1, ENST00000290155.2, ENST00000290155.3, ENST00000290155.4, ENST00000290155.5, ENST00000290155.6, ENST00000290155.7, NM_021254, P57076, uc002yqc.1, uc002yqc.2, uc002yqc.3, uc002yqc.4, uc002yqc.5
UCSC ID: ENST00000290155.8
RefSeq Accession: NM_021254
Protein: P57076 (aka CU059_HUMAN or CU59_HUMAN)
CCDS: CCDS13617.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene CFAP298:
pcd (Primary Ciliary Dyskinesia)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.