Human Gene PPP2R3A (ENST00000264977.8) from GENCODE V44
  Description: Homo sapiens protein phosphatase 2 regulatory subunit B''alpha (PPP2R3A), transcript variant 1, mRNA. (from RefSeq NM_002718)
RefSeq Summary (NM_002718): This gene encodes one of the regulatory subunits of the protein phosphatase 2. Protein phosphatase 2 (formerly named type 2A) is one of the four major Ser/Thr phosphatases and is implicated in the negative control of cell growth and division. Protein phosphatase 2 holoenzymes are heterotrimeric proteins composed of a structural subunit A, a catalytic subunit C, and a regulatory subunit B. The regulatory subunit is encoded by a diverse set of genes that have been grouped into the B/PR55, B'/PR61, and B''/PR72 families. These different regulatory subunits confer distinct enzymatic specificities and intracellular localizations to the holozenzyme. The product of this gene belongs to the B'' family. The B'' family has been further divided into subfamilies. The product of this gene belongs to the alpha subfamily of regulatory subunit B''. Alternative splicing results in multiple transcript variants encoding different isoforms.[provided by RefSeq, Jun 2010].
Gencode Transcript: ENST00000264977.8
Gencode Gene: ENSG00000073711.11
Transcript (Including UTRs)
   Position: hg38 chr3:135,965,728-136,147,894 Size: 182,167 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr3:136,001,499-136,145,166 Size: 143,668 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:135,965,728-136,147,894)mRNA (may differ from genome)Protein (1150 aa)
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OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: P2R3A_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha; AltName: Full=PP2A subunit B isoform PR72/PR130; AltName: Full=PP2A subunit B isoform R3 isoform; AltName: Full=PP2A subunit B isoforms B''-PR72/PR130; AltName: Full=PP2A subunit B isoforms B72/B130; AltName: Full=Serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B;
FUNCTION: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment.
SUBUNIT: PP2A consists of a common heterodimeric core enzyme, composed of a 36 kDa catalytic subunit (subunit C) and a 65 kDa constant regulatory subunit (PR65 or subunit A), that associates with a variety of regulatory subunits. Proteins that associate with the core dimer include three families of regulatory subunits B (the R2/B/PR55/B55, R3/B''/PR72/PR130/PR59 and R5/B'/B56 families), the 48 kDa variable regulatory subunit, viral proteins, and cell signaling molecules.
INTERACTION: Q969G9:NKD1; NbExp=3; IntAct=EBI-949210, EBI-1538217;
TISSUE SPECIFICITY: Expressed in heart, brain, placenta, lung, muscle and kidney.
SIMILARITY: Contains 2 EF-hand domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.52 RPKM in Heart - Left Ventricle
Total median expression: 132.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -151.10562-0.269 Picture PostScript Text
3' UTR -630.902728-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR018247 - EF_Hand_1_Ca_BS
IPR018249 - EF_HAND_2

ModBase Predicted Comparative 3D Structure on Q06190
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0019888 protein phosphatase regulator activity
GO:0030674 protein binding, bridging
GO:0046872 metal ion binding

Biological Process:
GO:0001754 eye photoreceptor cell differentiation
GO:0006470 protein dephosphorylation
GO:0007525 somatic muscle development
GO:0043666 regulation of phosphoprotein phosphatase activity
GO:0045732 positive regulation of protein catabolic process
GO:0061053 somite development
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:0090244 Wnt signaling pathway involved in somitogenesis
GO:0090249 regulation of cell motility involved in somitogenic axis elongation
GO:0090263 positive regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0000159 protein phosphatase type 2A complex


-  Descriptions from all associated GenBank mRNAs
  AK293012 - Homo sapiens cDNA FLJ76978 complete cds, highly similar to Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha (PPP2R3A), transcript variant 1, mRNA.
BC065531 - Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, mRNA (cDNA clone MGC:70610 IMAGE:6161260), complete cds.
AK298059 - Homo sapiens cDNA FLJ50595 complete cds, highly similar to Serine/threonine-protein phosphatase 2A 72/130kDa regulatory subunit B.
AK314243 - Homo sapiens cDNA, FLJ94988, highly similar to Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha (PPP2R3A), mRNA.
L07590 - Human protein phosphatase 2A 130 kDa regulatory subunit mRNA, complete cds.
AB384731 - Synthetic construct DNA, clone: pF1KB3037, Homo sapiens PPP2R3A gene for serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B, complete cds, without stop codon, in Flexi system.
KJ897366 - Synthetic construct Homo sapiens clone ccsbBroadEn_06760 PPP2R3A gene, encodes complete protein.
AK316258 - Homo sapiens cDNA, FLJ79157 complete cds, highly similar to Serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B.
L12146 - Homo sapiens protein phosphatase 2A 72 kDa regulatory subunit mRNA, complete cds.
AK299544 - Homo sapiens cDNA FLJ50637 complete cds, highly similar to Serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B.
AK302163 - Homo sapiens cDNA FLJ52289 complete cds, highly similar to Serine/threonine-protein phosphatase 2A 72/130 kDa regulatory subunit B.
AL389975 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2004632.
BC015034 - Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, mRNA (cDNA clone IMAGE:3922182), partial cds.
BC029409 - Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, mRNA (cDNA clone IMAGE:4273382), partial cds.
JD053001 - Sequence 34025 from Patent EP1572962.
JD245983 - Sequence 227007 from Patent EP1572962.
JD490224 - Sequence 471248 from Patent EP1572962.
JD182347 - Sequence 163371 from Patent EP1572962.
BC040158 - Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit B'', alpha, mRNA (cDNA clone IMAGE:5404627), with apparent retained intron.
JD306878 - Sequence 287902 from Patent EP1572962.
JD131623 - Sequence 112647 from Patent EP1572962.
JD386125 - Sequence 367149 from Patent EP1572962.
JD275397 - Sequence 256421 from Patent EP1572962.
JD131147 - Sequence 112171 from Patent EP1572962.
JD318929 - Sequence 299953 from Patent EP1572962.
JD436108 - Sequence 417132 from Patent EP1572962.
JD163963 - Sequence 144987 from Patent EP1572962.
JD041924 - Sequence 22948 from Patent EP1572962.
JD277902 - Sequence 258926 from Patent EP1572962.
JD112179 - Sequence 93203 from Patent EP1572962.
JD089356 - Sequence 70380 from Patent EP1572962.
JD226330 - Sequence 207354 from Patent EP1572962.
JD231793 - Sequence 212817 from Patent EP1572962.
JD546135 - Sequence 527159 from Patent EP1572962.
JD543277 - Sequence 524301 from Patent EP1572962.
JD478591 - Sequence 459615 from Patent EP1572962.
JD463837 - Sequence 444861 from Patent EP1572962.
JD148326 - Sequence 129350 from Patent EP1572962.
JD249883 - Sequence 230907 from Patent EP1572962.
JD354356 - Sequence 335380 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8KAE7, B7ZAE3, ENST00000264977.1, ENST00000264977.2, ENST00000264977.3, ENST00000264977.4, ENST00000264977.5, ENST00000264977.6, ENST00000264977.7, NM_002718, P2R3A_HUMAN, PPP2R3, Q06189, Q06190, Q9NPQ5, uc003eqv.1, uc003eqv.2, uc003eqv.3, uc003eqv.4
UCSC ID: ENST00000264977.8
RefSeq Accession: NM_002718
Protein: Q06190 (aka P2R3A_HUMAN)
CCDS: CCDS3087.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.