Human Gene SLC51A (ENST00000296327.10) from GENCODE V44
  Description: Homo sapiens solute carrier family 51 subunit alpha (SLC51A), mRNA. (from RefSeq NM_152672)
Gencode Transcript: ENST00000296327.10
Gencode Gene: ENSG00000163959.10
Transcript (Including UTRs)
   Position: hg38 chr3:196,216,534-196,233,427 Size: 16,894 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg38 chr3:196,216,713-196,233,199 Size: 16,487 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:196,216,534-196,233,427)mRNA (may differ from genome)Protein (340 aa)
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OSTA_HUMAN
DESCRIPTION: RecName: Full=Organic solute transporter subunit alpha; Short=OST-alpha; AltName: Full=Solute carrier family 51 subunit alpha;
FUNCTION: Essential component of the Ost-alpha/Ost-beta complex, a heterodimer that acts as the intestinal basolateral transporter responsible for bile acid export from enterocytes into portal blood. Efficiently transports the major species of bile acids.
SUBUNIT: Interacts with SLC51B. The Ost-alpha/Ost-beta complex is a heterodimer composed of alpha (SLC51A) and beta (SLC51B) subunit (By similarity).
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein (By similarity). Note=Transported from the endoplasmic reticulum to the plasma membrane once interacting with SLC51B (By similarity). Mainly restricted to the lateral and basal membranes of ileal enterocytes.
TISSUE SPECIFICITY: Widely expressed with a high expression in ileum. Expressed in testis, colon, liver, small intestine, kidney, ovary and adrenal gland; and at low levels in heart, lung, brain, pituitary, thyroid gland, uterus, prostate, mammary gland and fat.
INDUCTION: Positively regulated via NR1H4/FXR in adrenal gland, kidney and intestine.
SIMILARITY: Belongs to the OST-alpha family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC51A
Diseases sorted by gene-association score: bone resorption disease (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.13 RPKM in Small Intestine - Terminal Ileum
Total median expression: 75.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.90179-0.346 Picture PostScript Text
3' UTR -49.60228-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005178 - Ost-alpha

Pfam Domains:
PF03619 - Organic solute transporter Ostalpha

ModBase Predicted Comparative 3D Structure on Q86UW1
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0015125 bile acid transmembrane transporter activity
GO:0022857 transmembrane transporter activity
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0015721 bile acid and bile salt transport
GO:0032782 bile acid secretion
GO:0055085 transmembrane transport
GO:0071702 organic substance transport

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AK172837 - Homo sapiens cDNA FLJ23998 fis, clone HSI11478.
AK300996 - Homo sapiens cDNA FLJ60903 complete cds, moderately similar to Homo sapiens organic solute transporter alpha (OSTalpha), mRNA.
AY194243 - Homo sapiens organic solute transporter alpha mRNA, complete cds.
JD092449 - Sequence 73473 from Patent EP1572962.
AK310276 - Homo sapiens cDNA, FLJ17318.
BC029606 - Homo sapiens organic solute transporter alpha, mRNA (cDNA clone MGC:39807 IMAGE:5297443), complete cds.
CU688714 - Synthetic construct Homo sapiens gateway clone IMAGE:100016767 5' read OSTalpha mRNA.
KJ903990 - Synthetic construct Homo sapiens clone ccsbBroadEn_13384 OSTalpha gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000296327.1, ENST00000296327.2, ENST00000296327.3, ENST00000296327.4, ENST00000296327.5, ENST00000296327.6, ENST00000296327.7, ENST00000296327.8, ENST00000296327.9, NM_152672, OSTA, OSTA_HUMAN, Q6ZMC7, Q86UW1, uc003fwd.1, uc003fwd.2, uc003fwd.3, uc003fwd.4, uc003fwd.5
UCSC ID: ENST00000296327.10
RefSeq Accession: NM_152672
Protein: Q86UW1 (aka OSTA_HUMAN)
CCDS: CCDS3314.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.