Human Gene CFI (ENST00000394634.7) from GENCODE V44
  Description: Homo sapiens complement factor I (CFI), transcript variant 13, non-coding RNA. (from RefSeq NR_164673)
RefSeq Summary (NM_000204): This gene encodes a serine proteinase that is essential for regulating the complement cascade. The encoded preproprotein is cleaved to produce both heavy and light chains, which are linked by disulfide bonds to form a heterodimeric glycoprotein. This heterodimer can cleave and inactivate the complement components C4b and C3b, and it prevents the assembly of the C3 and C5 convertase enzymes. Defects in this gene cause complement factor I deficiency, an autosomal recessive disease associated with a susceptibility to pyogenic infections. Mutations in this gene have been associated with a predisposition to atypical hemolytic uremic syndrome, a disease characterized by acute renal failure, microangiopathic hemolytic anemia and thrombocytopenia. Primary glomerulonephritis with immune deposits and age-related macular degeneration are other conditions associated with mutations of this gene. [provided by RefSeq, Dec 2015].
Gencode Transcript: ENST00000394634.7
Gencode Gene: ENSG00000205403.15
Transcript (Including UTRs)
   Position: hg38 chr4:109,740,695-109,801,999 Size: 61,305 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg38 chr4:109,740,893-109,801,971 Size: 61,079 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:109,740,695-109,801,999)mRNA (may differ from genome)Protein (583 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCMalacardsMGIneXtProtOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CFAI_HUMAN
DESCRIPTION: RecName: Full=Complement factor I; EC=3.4.21.45; AltName: Full=C3B/C4B inactivator; Contains: RecName: Full=Complement factor I heavy chain; Contains: RecName: Full=Complement factor I light chain; Flags: Precursor;
FUNCTION: Responsible for cleaving the alpha-chains of C4b and C3b in the presence of the cofactors C4-binding protein and factor H respectively.
CATALYTIC ACTIVITY: Inactivates complement subcomponents C3b, iC3b and C4b by proteolytic cleavage.
SUBUNIT: Heterodimer of a light and heavy chains linked by disulfide bonds.
SUBCELLULAR LOCATION: Secreted, extracellular space.
TISSUE SPECIFICITY: Plasma.
DISEASE: Defects in CFI are a cause of susceptibility to hemolytic uremic syndrome atypical type 3 (AHUS3) [MIM:612923]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.
DISEASE: Defects in CFI are the cause of complement factor I deficiency (CFI deficiency) [MIM:610984]. CFI deficiency is an autosomal recessive condition associated with a propensity to pyogenic infections.
SIMILARITY: Belongs to the peptidase S1 family.
SIMILARITY: Contains 1 Kazal-like domain.
SIMILARITY: Contains 2 LDL-receptor class A domains.
SIMILARITY: Contains 1 peptidase S1 domain.
SIMILARITY: Contains 1 SRCR domain.
SEQUENCE CAUTION: Sequence=CAA68416.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
WEB RESOURCE: Name=CFIbase; Note=CFI mutation db; URL="http://bioinf.uta.fi/CFIbase/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/CFI";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CFI
Diseases sorted by gene-association score: complement factor i deficiency* (1608), hemolytic uremic syndrome, atypical 3* (1256), macular degeneration, age-related, 13* (880), afibrinogenemia* (214), afibrinogenemia, congenital* (208), cfi-related atypical hemolytic-uremic syndrome* (100), hemolytic-uremic syndrome (35), de novo thrombotic microangiopathy after kidney transplantation* (25), acute hemorrhagic leukoencephalitis (23), hellp syndrome* (21), glomerulonephritis (15), complement factor h deficiency (10), thrombotic thrombocytopenic purpura (9), degeneration of macula and posterior pole (6), aseptic meningitis (6), hemolytic anemia (5), macular degeneration, age-related, 1 (5), eye disease (2), autosomal recessive disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 161.53 RPKM in Liver
Total median expression: 608.83 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR 0.00280.000 Picture PostScript Text
3' UTR -34.10198-0.172 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003884 - FacI_MAC
IPR023415 - LDLR_class-A_CS
IPR002172 - LDrepeatLR_classA_rpt
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A
IPR001190 - Srcr_rcpt
IPR017448 - Srcr_rcpt-rel

Pfam Domains:
PF00057 - Low-density lipoprotein receptor domain class A
PF00530 - Scavenger receptor cysteine-rich domain
PF00089 - Trypsin

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2XRC - X-ray


ModBase Predicted Comparative 3D Structure on P05156
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004252 serine-type endopeptidase activity
GO:0005044 scavenger receptor activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0002376 immune system process
GO:0006508 proteolysis
GO:0006898 receptor-mediated endocytosis
GO:0006958 complement activation, classical pathway
GO:0030449 regulation of complement activation
GO:0045087 innate immune response

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KU159429 - Homo sapiens complement factor I mRNA, complete cds.
JD504017 - Sequence 485041 from Patent EP1572962.
AK122686 - Homo sapiens cDNA FLJ16144 fis, clone BRAMY2039314, highly similar to COMPLEMENT FACTOR I PRECURSOR (EC 3.4.21.45).
J02770 - Human factor I (C3b/C4b inactivator) mRNA, complete cds.
AK299232 - Homo sapiens cDNA FLJ58124 complete cds, highly similar to Complement factor I precursor (EC 3.4.21.45).
AK290625 - Homo sapiens cDNA FLJ76262 complete cds, highly similar to Homo sapiens I factor (complement) (IF), mRNA.
JD225944 - Sequence 206968 from Patent EP1572962.
BC020718 - Homo sapiens complement factor I, mRNA (cDNA clone MGC:22501 IMAGE:4716122), complete cds.
KJ901506 - Synthetic construct Homo sapiens clone ccsbBroadEn_10900 CFI gene, encodes complete protein.
KR711236 - Synthetic construct Homo sapiens clone CCSBHm_00021345 CFI (CFI) mRNA, encodes complete protein.
KR711237 - Synthetic construct Homo sapiens clone CCSBHm_00021348 CFI (CFI) mRNA, encodes complete protein.
KR711238 - Synthetic construct Homo sapiens clone CCSBHm_00021352 CFI (CFI) mRNA, encodes complete protein.
KR711239 - Synthetic construct Homo sapiens clone CCSBHm_00021360 CFI (CFI) mRNA, encodes complete protein.
Y00318 - Human mRNA for complement control protein factor I.
AB590959 - Synthetic construct DNA, clone: pFN21AE2007, Homo sapiens CFI gene for complement factor I, without stop codon, in Flexi system.
BC005275 - Homo sapiens cDNA clone IMAGE:4052646, containing frame-shift errors.
CU676662 - Synthetic construct Homo sapiens gateway clone IMAGE:100022323 5' read CFI mRNA.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P05156 (Reactome details) participates in the following event(s):

R-HSA-976801 Complement factor I complex formation
R-HSA-976810 Complement factor I binds to extracellular Factor H:C3b
R-HSA-977359 Complement factor I binds to membrane-associated Factor H:C3b
R-HSA-977602 Complement factor I binds to MCP, CR1:C4b, C3b
R-HSA-981658 Complement factor I binds C4BP
R-HSA-976743 Factor I inactivates plasma Factor H-bound C3b
R-HSA-977615 Factor I inactivates MCP/CR1-bound C4b/C3b
R-HSA-981637 Complement factor I inactivates C4BP-bound C4b
R-HSA-977371 Factor I inactivates Factor H-boundC3b
R-HSA-3266557 Factor I cleaves iC3b
R-HSA-977606 Regulation of Complement cascade
R-HSA-166658 Complement cascade
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CFAI_HUMAN, ENST00000394634.1, ENST00000394634.2, ENST00000394634.3, ENST00000394634.4, ENST00000394634.5, ENST00000394634.6, IF, NR_164673, O60442, P05156, uc003hzr.1, uc003hzr.2, uc003hzr.3, uc003hzr.4, uc003hzr.5, uc003hzr.6
UCSC ID: ENST00000394634.7
RefSeq Accession: NM_000204
Protein: P05156 (aka CFAI_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene CFI:
husa (Genetic Atypical Hemolytic-Uremic Syndrome)
mpgn (C3 Glomerulopathy)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.