Human Gene C1QTNF2 (ENST00000393975.4) from GENCODE V44
  Description: C1q and TNF related 2 (from HGNC C1QTNF2)
Gencode Transcript: ENST00000393975.4
Gencode Gene: ENSG00000145861.9
Transcript (Including UTRs)
   Position: hg38 chr5:160,347,780-160,370,641 Size: 22,862 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chr5:160,349,168-160,370,637 Size: 21,470 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:160,347,780-160,370,641)mRNA (may differ from genome)Protein (330 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
LynxMalacardsMGIPubMedUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.90 RPKM in Artery - Aorta
Total median expression: 69.57 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -424.101388-0.306 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Descriptions from all associated GenBank mRNAs
  BC011699 - Homo sapiens C1q and tumor necrosis factor related protein 2, mRNA (cDNA clone IMAGE:3530165), partial cds.
LP896376 - Sequence 1240 from Patent EP3253886.
JD447293 - Sequence 428317 from Patent EP1572962.
JD321166 - Sequence 302190 from Patent EP1572962.
JD041425 - Sequence 22449 from Patent EP1572962.
JD472548 - Sequence 453572 from Patent EP1572962.
JD472549 - Sequence 453573 from Patent EP1572962.
JD526623 - Sequence 507647 from Patent EP1572962.
JD395487 - Sequence 376511 from Patent EP1572962.
JD278847 - Sequence 259871 from Patent EP1572962.
JD179993 - Sequence 161017 from Patent EP1572962.
JD199566 - Sequence 180590 from Patent EP1572962.
JD271365 - Sequence 252389 from Patent EP1572962.
JD060741 - Sequence 41765 from Patent EP1572962.
JD145295 - Sequence 126319 from Patent EP1572962.
JD422020 - Sequence 403044 from Patent EP1572962.
JD343863 - Sequence 324887 from Patent EP1572962.
JD561182 - Sequence 542206 from Patent EP1572962.
JD249690 - Sequence 230714 from Patent EP1572962.
JD337879 - Sequence 318903 from Patent EP1572962.
JD283191 - Sequence 264215 from Patent EP1572962.
JD482410 - Sequence 463434 from Patent EP1572962.
JD346159 - Sequence 327183 from Patent EP1572962.
JD314271 - Sequence 295295 from Patent EP1572962.
JD172060 - Sequence 153084 from Patent EP1572962.
JD045800 - Sequence 26824 from Patent EP1572962.
JD329616 - Sequence 310640 from Patent EP1572962.
JD096768 - Sequence 77792 from Patent EP1572962.
JD563307 - Sequence 544331 from Patent EP1572962.
JD284869 - Sequence 265893 from Patent EP1572962.
JD171216 - Sequence 152240 from Patent EP1572962.
JD469394 - Sequence 450418 from Patent EP1572962.
JD318068 - Sequence 299092 from Patent EP1572962.
BC054506 - Homo sapiens C1q and tumor necrosis factor related protein 2, mRNA (cDNA clone IMAGE:5179095), partial cds.
AF329836 - Homo sapiens complement-c1q tumor necrosis factor-related protein (CTRP2) mRNA, complete cds.
AY358839 - Homo sapiens clone DNA143501 CTRP2 (UNQ6349) mRNA, complete cds.
JD294501 - Sequence 275525 from Patent EP1572962.
JD052679 - Sequence 33703 from Patent EP1572962.
JD486673 - Sequence 467697 from Patent EP1572962.
JD449027 - Sequence 430051 from Patent EP1572962.
KJ903649 - Synthetic construct Homo sapiens clone ccsbBroadEn_13043 C1QTNF2 gene, encodes complete protein.
DQ893261 - Synthetic construct clone IMAGE:100005891; FLH195713.01X; RZPDo839F06152D C1q and tumor necrosis factor related protein 2 (C1QTNF2) gene, encodes complete protein.
DQ896590 - Synthetic construct Homo sapiens clone IMAGE:100011050; FLH195709.01L; RZPDo839F06151D C1q and tumor necrosis factor related protein 2 (C1QTNF2) gene, encodes complete protein.
AB590457 - Synthetic construct DNA, clone: pFN21AE1133, Homo sapiens C1QTNF2 gene for C1q and tumor necrosis factor related protein 2, without stop codon, in Flexi system.
CU691098 - Synthetic construct Homo sapiens gateway clone IMAGE:100021290 5' read C1QTNF2 mRNA.
JD320350 - Sequence 301374 from Patent EP1572962.
JD069361 - Sequence 50385 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A499FIM1, ENST00000393975.1, ENST00000393975.2, ENST00000393975.3, LP896376, uc003lyd.1, uc003lyd.2, uc003lyd.3, uc003lyd.4, uc003lyd.5
UCSC ID: ENST00000393975.4
RefSeq Accession: NM_031908
CCDS: CCDS4351.2

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.