Human Gene TAGAP (ENST00000367066.8) from GENCODE V44
  Description: Homo sapiens T cell activation RhoGTPase activating protein (TAGAP), transcript variant 2, mRNA. (from RefSeq NM_054114)
RefSeq Summary (NM_054114): This gene encodes a member of the Rho GTPase-activator protein superfamily. The encoded protein may function as a Rho GTPase-activating protein. Alterations in this gene may be associated with several diseases, including rheumatoid arthritis, celiac disease, and multiple sclerosis. Alternate splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2013].
Gencode Transcript: ENST00000367066.8
Gencode Gene: ENSG00000164691.18
Transcript (Including UTRs)
   Position: hg38 chr6:159,034,481-159,044,991 Size: 10,511 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr6:159,035,827-159,044,146 Size: 8,320 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:159,034,481-159,044,991)mRNA (may differ from genome)Protein (731 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TAGAP_HUMAN
DESCRIPTION: RecName: Full=T-cell activation Rho GTPase-activating protein; AltName: Full=T-cell activation GTPase-activating protein;
FUNCTION: May function as a GTPase-activating protein and may play important roles during T-cell activation.
SIMILARITY: Contains 1 Rho-GAP domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TAGAP
Diseases sorted by gene-association score: diabetes mellitus, insulin-dependent, 21* (50), auditory agnosia (17), celiac disease (12), anus disease (9), autoimmune disease of gastrointestinal tract (5), rheumatoid arthritis (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.07 RPKM in Whole Blood
Total median expression: 77.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.80171-0.285 Picture PostScript Text
3' UTR -307.501346-0.228 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom

Pfam Domains:
PF00620 - RhoGAP domain

ModBase Predicted Comparative 3D Structure on Q8N103
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005085 guanyl-nucleotide exchange factor activity
GO:0005096 GTPase activator activity

Biological Process:
GO:0007165 signal transduction
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK057193 - Homo sapiens cDNA FLJ32631 fis, clone SYNOV1000164.
AK097090 - Homo sapiens cDNA FLJ39771 fis, clone SPLEN2001141, weakly similar to RHO-GTPASE-ACTIVATING PROTEIN 1.
AL832662 - Homo sapiens mRNA; cDNA DKFZp313F0112 (from clone DKFZp313F0112).
AF385429 - Homo sapiens T-cell activation Rho GTPase activating protein mRNA, complete cds.
AF385430 - Homo sapiens T-cell activation Rho GTPase activating protein splice variant 1 mRNA, complete cds.
JD296846 - Sequence 277870 from Patent EP1572962.
JD299771 - Sequence 280795 from Patent EP1572962.
JD249507 - Sequence 230531 from Patent EP1572962.
BC111731 - Homo sapiens T-cell activation RhoGTPase activating protein, mRNA (cDNA clone MGC:133247 IMAGE:40035199), complete cds.
AF314817 - Homo sapiens FKSG15 (FKSG15) mRNA, complete cds.
JD274393 - Sequence 255417 from Patent EP1572962.
JD378058 - Sequence 359082 from Patent EP1572962.
JD385593 - Sequence 366617 from Patent EP1572962.
KJ895333 - Synthetic construct Homo sapiens clone ccsbBroadEn_04727 TAGAP gene, encodes complete protein.
AK298686 - Homo sapiens cDNA FLJ59734 complete cds, highly similar to T-cell activation Rho GTPase-activatingprotein.
AK025272 - Homo sapiens cDNA: FLJ21619 fis, clone COL07793.
BC015859 - Homo sapiens T-cell activation RhoGTPase activating protein, mRNA (cDNA clone IMAGE:4689539), complete cds.
HQ447138 - Synthetic construct Homo sapiens clone IMAGE:100070426; CCSB009173_02 T-cell activation GTPase activating protein (TAGAP) gene, encodes complete protein.
KJ895332 - Synthetic construct Homo sapiens clone ccsbBroadEn_04726 TAGAP gene, encodes complete protein.
CU677479 - Synthetic construct Homo sapiens gateway clone IMAGE:100016932 5' read TAGAP mRNA.
JD440170 - Sequence 421194 from Patent EP1572962.
JD069217 - Sequence 50241 from Patent EP1572962.
JD051572 - Sequence 32596 from Patent EP1572962.
JD273338 - Sequence 254362 from Patent EP1572962.
JD044400 - Sequence 25424 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8N103 (Reactome details) participates in the following event(s):

R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194840 Rho GTPase cycle
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000367066.1, ENST00000367066.2, ENST00000367066.3, ENST00000367066.4, ENST00000367066.5, ENST00000367066.6, ENST00000367066.7, FKSG15, NM_054114, Q2NKM8, Q8N103, Q8NI40, Q96KZ2, Q96QA2, TAGAP1, TAGAP_HUMAN, uc003qrz.1, uc003qrz.2, uc003qrz.3, uc003qrz.4, uc003qrz.5, uc003qrz.6
UCSC ID: ENST00000367066.8
RefSeq Accession: NM_054114
Protein: Q8N103 (aka TAGAP_HUMAN)
CCDS: CCDS5261.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.