Human Gene PPP3CC (ENST00000240139.10) from GENCODE V44
  Description: Homo sapiens protein phosphatase 3 catalytic subunit gamma (PPP3CC), transcript variant 2, mRNA. (from RefSeq NM_005605)
RefSeq Summary (NM_001243974): Calcineurin is a calcium-dependent, calmodulin-stimulated protein phosphatase involved in the downstream regulation of dopaminergic signal transduction. Calcineurin is composed of a regulatory subunit and a catalytic subunit. The protein encoded by this gene represents one of the regulatory subunits that has been found for calcineurin. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011].
Gencode Transcript: ENST00000240139.10
Gencode Gene: ENSG00000120910.15
Transcript (Including UTRs)
   Position: hg38 chr8:22,441,078-22,541,125 Size: 100,048 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr8:22,441,410-22,540,802 Size: 99,393 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:22,441,078-22,541,125)mRNA (may differ from genome)Protein (512 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PP2BC_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform; EC=3.1.3.16; AltName: Full=CAM-PRP catalytic subunit; AltName: Full=Calcineurin, testis-specific catalytic subunit; AltName: Full=Calmodulin-dependent calcineurin A subunit gamma isoform;
FUNCTION: Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
COFACTOR: Binds 1 Fe(3+) ion per subunit (By similarity).
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBUNIT: Composed of two components (A and B), the A component is the catalytic subunit and the B component confers calcium sensitivity.
TISSUE SPECIFICITY: Testis.
SIMILARITY: Belongs to the PPP phosphatase family. PP-2B subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PPP3CC
Diseases sorted by gene-association score: schizophrenia (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.45 RPKM in Testis
Total median expression: 455.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -195.00332-0.587 Picture PostScript Text
3' UTR -61.70323-0.191 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004843 - Metallo_PEstase_dom
IPR006186 - Ser/Thr-sp_prot-phosphatase

Pfam Domains:
PF00149 - Calcineurin-like phosphoesterase

ModBase Predicted Comparative 3D Structure on P48454
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0016787 hydrolase activity
GO:0033192 calmodulin-dependent protein phosphatase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006470 protein dephosphorylation
GO:0007420 brain development
GO:0033173 calcineurin-NFAT signaling cascade

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK055013 - Homo sapiens cDNA FLJ30451 fis, clone BRACE2009291, highly similar to SERINE/THREONINE PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT, GAMMA ISOFORM (EC 3.1.3.16).
BC004864 - Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform, mRNA (cDNA clone MGC:10576 IMAGE:3677098), complete cds.
JD161305 - Sequence 142329 from Patent EP1572962.
S46622 - calcineurin A catalytic subunit [human, testis, mRNA, 2134 nt].
AK299415 - Homo sapiens cDNA FLJ58322 complete cds, highly similar to Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform (EC 3.1.3.16).
AY007249 - Homo sapiens calcineurin A catalytic subunit gamma isoform mRNA, complete cds.
JD195765 - Sequence 176789 from Patent EP1572962.
JD158004 - Sequence 139028 from Patent EP1572962.
JD179767 - Sequence 160791 from Patent EP1572962.
AB385002 - Synthetic construct DNA, clone: pF1KB4944, Homo sapiens PPP3CC gene for serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform, complete cds, without stop codon, in Flexi system.
CU678778 - Synthetic construct Homo sapiens gateway clone IMAGE:100020284 5' read PPP3CC mRNA.
HQ448368 - Synthetic construct Homo sapiens clone IMAGE:100071792; CCSB004334_03 protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform (PPP3CC) gene, encodes complete protein.
KJ897367 - Synthetic construct Homo sapiens clone ccsbBroadEn_06761 PPP3CC gene, encodes complete protein.
JD335594 - Sequence 316618 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway
hsa04020 - Calcium signaling pathway
hsa04114 - Oocyte meiosis
hsa04210 - Apoptosis
hsa04310 - Wnt signaling pathway
hsa04360 - Axon guidance
hsa04370 - VEGF signaling pathway
hsa04650 - Natural killer cell mediated cytotoxicity
hsa04660 - T cell receptor signaling pathway
hsa04662 - B cell receptor signaling pathway
hsa04720 - Long-term potentiation
hsa05010 - Alzheimer's disease
hsa05014 - Amyotrophic lateral sclerosis (ALS)

BioCarta from NCI Cancer Genome Anatomy Project
h_bcrPathway - BCR Signaling Pathway
h_fcer1Pathway - Fc Epsilon Receptor I Signaling in Mast Cells
h_vipPathway - Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells
h_nos1Pathway - Nitric Oxide Signaling Pathway
h_calcineurinPathway - Effects of calcineurin in Keratinocyte Differentiation
h_gpcrPathway - Signaling Pathway from G-Protein Families
h_hdacPathway - Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK)
h_fMLPpathway - fMLP induced chemokine gene expression in HMC-1 cells
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)
h_pgc1aPathway - Regulation of PGC-1a
h_mef2dPathway - Role of MEF2D in T-cell Apoptosis
h_ndkDynaminPathway - Endocytotic role of NDK, Phosphins and Dynamin
h_tcrPathway - T Cell Receptor Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P48454 (Reactome details) participates in the following event(s):

R-HSA-139906 Activation of BAD by calcineurin
R-HSA-201783 Inactive catalytic PP2B is activated by the binding of calmodulin
R-HSA-201787 PPP3 complex dephosphorylates DARPP-32 on Thr34
R-HSA-111447 Activation of BAD and translocation to mitochondria
R-HSA-180024 DARPP-32 events
R-HSA-114452 Activation of BH3-only proteins
R-HSA-111885 Opioid Signalling
R-HSA-109606 Intrinsic Pathway for Apoptosis
R-HSA-418594 G alpha (i) signalling events
R-HSA-109581 Apoptosis
R-HSA-388396 GPCR downstream signalling
R-HSA-5357801 Programmed Cell Death
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CALNA3, CNA3, ENST00000240139.1, ENST00000240139.2, ENST00000240139.3, ENST00000240139.4, ENST00000240139.5, ENST00000240139.6, ENST00000240139.7, ENST00000240139.8, ENST00000240139.9, NM_005605, P48454, PP2BC_HUMAN, Q9BSS6, Q9H4M5, uc003xbs.1, uc003xbs.2, uc003xbs.3, uc003xbs.4, uc003xbs.5
UCSC ID: ENST00000240139.10
RefSeq Accession: NM_001243974
Protein: P48454 (aka PP2BC_HUMAN)
CCDS: CCDS34859.1, CCDS59093.1, CCDS59094.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.