Human Gene SAT1 (ENST00000379270.5) from GENCODE V44
  Description: Homo sapiens spermidine/spermine N1-acetyltransferase 1 (SAT1), transcript variant 1, mRNA. (from RefSeq NM_002970)
RefSeq Summary (NM_002970): The protein encoded by this gene belongs to the acetyltransferase family, and is a rate-limiting enzyme in the catabolic pathway of polyamine metabolism. It catalyzes the acetylation of spermidine and spermine, and is involved in the regulation of the intracellular concentration of polyamines and their transport out of cells. Defects in this gene are associated with keratosis follicularis spinulosa decalvans (KFSD). Alternatively spliced transcripts have been found for this gene.[provided by RefSeq, Sep 2009].
Gencode Transcript: ENST00000379270.5
Gencode Gene: ENSG00000130066.17
Transcript (Including UTRs)
   Position: hg38 chrX:23,783,173-23,786,210 Size: 3,038 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg38 chrX:23,783,352-23,785,856 Size: 2,505 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:23,783,173-23,786,210)mRNA (may differ from genome)Protein (171 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDMalacardsMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SAT1_HUMAN
DESCRIPTION: RecName: Full=Diamine acetyltransferase 1; EC=2.3.1.57; AltName: Full=Polyamine N-acetyltransferase 1; AltName: Full=Putrescine acetyltransferase; AltName: Full=Spermidine/spermine N(1)-acetyltransferase 1; Short=SSAT; Short=SSAT-1;
FUNCTION: Enzyme which catalyzes the acetylation of polyamines. Substrate specificity: norspermidine = spermidine >> spermine > N(1)-acetylspermine > putrescine. This highly regulated enzyme allows a fine attenuation of the intracellular concentration of polyamines. Also involved in the regulation of polyamine transport out of cells. Acts on 1,3-diaminopropane, 1,5-diaminopentane, putrescine, spermidine (forming N(1)- and N(8)-acetylspermidine), spermine, N(1)-acetylspermidine and N(8)-acetylspermidine.
CATALYTIC ACTIVITY: Acetyl-CoA + an alkane-alpha,omega-diamine = CoA + an N-acetyldiamine.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=3.8 uM for acetyl-coenzyme A; KM=5.7 uM for spermine; KM=22 uM for spermidine; pH dependence: Optimum pH is 8.0;
PATHWAY: Amine and polyamine degradation; putrescine degradation; N-acetylputrescine from putrescine: step 1/1.
SUBUNIT: Homodimer.
INTERACTION: P17482:HOXB9; NbExp=3; IntAct=EBI-711613, EBI-745290; Q9BQ70:TCF25; NbExp=3; IntAct=EBI-711613, EBI-745182;
SUBCELLULAR LOCATION: Cytoplasm.
DISEASE: Defects in SAT1 may be a cause of keratosis follicularis spinulosa decalvans X-linked (KFSDX) [MIM:308800]. A rare disorder affecting the skin and the eye. Affected men show thickening of the skin of the neck, ears, and extremities, especially the palms and soles, loss of eyebrows, eyelashes and beard, thickening of the eyelids with blepharitis and ectropion, and corneal degeneration.
SIMILARITY: Belongs to the acetyltransferase family.
SIMILARITY: Contains 1 N-acetyltransferase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SAT1
Diseases sorted by gene-association score: keratosis follicularis spinulosa decalvans, x-linked* (85), keratosis follicularis spinulosa decalvans* (39), keratosis (25), corneal degeneration (22), blepharitis (18), tinea barbae (16), venezuelan equine encephalitis (13), follicular mucinosis (8), angular cheilitis (7), ectropion (7), tinea capitis (6), chandler syndrome (5), atrichia with papular lesions (5), skin atrophy (5), tyrosinemia, type ii (5), hair disease (5), corneal dystrophy, thiel-behnke type (5), lung cancer (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 442.17 RPKM in Lung
Total median expression: 6747.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -57.60179-0.322 Picture PostScript Text
3' UTR -76.80354-0.217 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016181 - Acyl_CoA_acyltransferase
IPR000182 - GNAT_dom

Pfam Domains:
PF00583 - Acetyltransferase (GNAT) family

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2B3U - X-ray MuPIT 2B3V - X-ray MuPIT 2B4B - X-ray MuPIT 2B4D - X-ray MuPIT 2B58 - X-ray MuPIT 2B5G - X-ray MuPIT 2F5I - X-ray MuPIT 2FXF - X-ray MuPIT 2G3T - X-ray MuPIT 2JEV - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P21673
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004145 diamine N-acetyltransferase activity
GO:0005515 protein binding
GO:0008080 N-acetyltransferase activity
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0019809 spermidine binding
GO:0042802 identical protein binding

Biological Process:
GO:0001525 angiogenesis
GO:0006595 polyamine metabolic process
GO:0006596 polyamine biosynthetic process
GO:0006598 polyamine catabolic process
GO:0009447 putrescine catabolic process
GO:0032918 spermidine acetylation
GO:0042127 regulation of cell proliferation
GO:0046208 spermine catabolic process

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF211710 - JP 2014500723-A/19213: Polycomb-Associated Non-Coding RNAs.
MA447287 - JP 2018138019-A/19213: Polycomb-Associated Non-Coding RNAs.
LF385364 - JP 2014500723-A/192867: Polycomb-Associated Non-Coding RNAs.
MA620941 - JP 2018138019-A/192867: Polycomb-Associated Non-Coding RNAs.
AK310078 - Homo sapiens cDNA, FLJ17120.
FW339965 - Screening.
BC008424 - Homo sapiens spermidine/spermine N1-acetyltransferase 1, mRNA (cDNA clone MGC:14581 IMAGE:4134501), complete cds.
AF251292 - Homo sapiens DC21 mRNA, complete cds.
AK312162 - Homo sapiens cDNA, FLJ92448, Homo sapiens spermidine/spermine N1-acetyltransferase (SAT), mRNA.
AK310094 - Homo sapiens cDNA, FLJ17136.
M77693 - Spermidine/spermine N1-acetyltransferase mRNA, complete cds.
JD060873 - Sequence 41897 from Patent EP1572962.
AL050290 - Homo sapiens mRNA; cDNA DKFZp586G1923 (from clone DKFZp586G1923).
BC002503 - Homo sapiens spermidine/spermine N1-acetyltransferase 1, mRNA (cDNA clone MGC:1625 IMAGE:3051095), complete cds.
GQ900981 - Homo sapiens clone HEL-T-93 epididymis secretory sperm binding protein mRNA, complete cds.
LF206795 - JP 2014500723-A/14298: Polycomb-Associated Non-Coding RNAs.
MA442372 - JP 2018138019-A/14298: Polycomb-Associated Non-Coding RNAs.
LF358032 - JP 2014500723-A/165535: Polycomb-Associated Non-Coding RNAs.
MA593609 - JP 2018138019-A/165535: Polycomb-Associated Non-Coding RNAs.
AK315888 - Homo sapiens cDNA, FLJ79537 complete cds, weakly similar to Diamine acetyltransferase 1 (EC 2.3.1.57).
JD221991 - Sequence 203015 from Patent EP1572962.
JD137570 - Sequence 118594 from Patent EP1572962.
LF358031 - JP 2014500723-A/165534: Polycomb-Associated Non-Coding RNAs.
MA593608 - JP 2018138019-A/165534: Polycomb-Associated Non-Coding RNAs.
JD345211 - Sequence 326235 from Patent EP1572962.
LF382933 - JP 2014500723-A/190436: Polycomb-Associated Non-Coding RNAs.
MA618510 - JP 2018138019-A/190436: Polycomb-Associated Non-Coding RNAs.
M55580 - Human spermidine/spermine N1-acetyltransferase mRNA, complete cds.
AY841998 - Homo sapiens spermidine/spermine N1-acetyltransferase alpha variant (SAT) mRNA, complete cds, alternatively spliced.
AB464243 - Synthetic construct DNA, clone: pF1KB8373, Homo sapiens SAT1 gene for spermidine/spermine N1-acetyltransferase 1, without stop codon, in Flexi system.
AM392717 - Synthetic construct Homo sapiens clone IMAGE:100002596 for hypothetical protein (SAT gene).
CR450294 - Homo sapiens full open reading frame cDNA clone RZPDo834B121D for gene SAT, spermidine/spermine N1-acetyltransferase; complete cds; without stopcodon.
BT006825 - Homo sapiens spermidine/spermine N1-acetyltransferase mRNA, complete cds.
KJ892089 - Synthetic construct Homo sapiens clone ccsbBroadEn_01483 SAT1 gene, encodes complete protein.
JD026037 - Sequence 7061 from Patent EP1572962.
LF340476 - JP 2014500723-A/147979: Polycomb-Associated Non-Coding RNAs.
MA576053 - JP 2018138019-A/147979: Polycomb-Associated Non-Coding RNAs.
LF210703 - JP 2014500723-A/18206: Polycomb-Associated Non-Coding RNAs.
MA446280 - JP 2018138019-A/18206: Polycomb-Associated Non-Coding RNAs.
LF358030 - JP 2014500723-A/165533: Polycomb-Associated Non-Coding RNAs.
MA593607 - JP 2018138019-A/165533: Polycomb-Associated Non-Coding RNAs.
LF382931 - JP 2014500723-A/190434: Polycomb-Associated Non-Coding RNAs.
MA618508 - JP 2018138019-A/190434: Polycomb-Associated Non-Coding RNAs.
LF382928 - JP 2014500723-A/190431: Polycomb-Associated Non-Coding RNAs.
MA618505 - JP 2018138019-A/190431: Polycomb-Associated Non-Coding RNAs.
JD027236 - Sequence 8260 from Patent EP1572962.
JD029980 - Sequence 11004 from Patent EP1572962.
LF358029 - JP 2014500723-A/165532: Polycomb-Associated Non-Coding RNAs.
MA593606 - JP 2018138019-A/165532: Polycomb-Associated Non-Coding RNAs.
JD380413 - Sequence 361437 from Patent EP1572962.
LF358028 - JP 2014500723-A/165531: Polycomb-Associated Non-Coding RNAs.
MA593605 - JP 2018138019-A/165531: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-0 - putrescine degradation III
PWY-6117 - spermine and spermidine degradation I

Reactome (by CSHL, EBI, and GO)

Protein P21673 (Reactome details) participates in the following event(s):

R-HSA-351207 Spermine => N-acetylated spermine
R-HSA-351208 Spermidine => N-acetylated spermidine
R-HSA-351200 Interconversion of polyamines
R-HSA-351202 Metabolism of polyamines
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000379270.1, ENST00000379270.2, ENST00000379270.3, ENST00000379270.4, NM_002970, P21673, SAT, SAT1_HUMAN, uc004dau.1, uc004dau.2, uc004dau.3, uc004dau.4, uc004dau.5, uc004dau.6
UCSC ID: ENST00000379270.5
RefSeq Accession: NM_002970
Protein: P21673 (aka SAT1_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.