Human Gene INE1 (ENST00000456273.1) from GENCODE V44
  Description: Homo sapiens inactivation escape 1 (INE1), long non-coding RNA. (from RefSeq NR_024616)
RefSeq Summary (NR_024616): X chromosome inactivation provides dosage compensation for the expression level of X-linked genes from the single X in males and the two in females. This X chromosome gene is intronless and was identified because its transcription escapes X inactivation in females. This gene does not make a protein.[provided by RefSeq, May 2010].
Gencode Transcript: ENST00000456273.1
Gencode Gene: ENSG00000224975.1
Transcript (Including UTRs)
   Position: hg38 chrX:47,204,921-47,205,865 Size: 945 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:47,204,921-47,205,865)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGencodeHGNCLynx
MalacardsOMIMPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.92 RPKM in Ovary
Total median expression: 127.29 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF211433 - JP 2014500723-A/18936: Polycomb-Associated Non-Coding RNAs.
MA447010 - JP 2018138019-A/18936: Polycomb-Associated Non-Coding RNAs.
Y10696 - H.sapiens INE1 mRNA.
BC069772 - Homo sapiens inactivation escape 1 (non-protein coding), mRNA (cDNA clone IMAGE:7262587).
BC069671 - Homo sapiens inactivation escape 1, mRNA (cDNA clone IMAGE:7262658).
BC069696 - Homo sapiens inactivation escape 1, mRNA (cDNA clone IMAGE:7262575).
BC112149 - Homo sapiens inactivation escape 1 (non-protein coding), mRNA (cDNA clone IMAGE:8327617).
BC112175 - Homo sapiens inactivation escape 1 (non-protein coding), mRNA (cDNA clone IMAGE:8327643).
LF379475 - JP 2014500723-A/186978: Polycomb-Associated Non-Coding RNAs.
MA615052 - JP 2018138019-A/186978: Polycomb-Associated Non-Coding RNAs.
JD304550 - Sequence 285574 from Patent EP1572962.
JD256119 - Sequence 237143 from Patent EP1572962.
JD511182 - Sequence 492206 from Patent EP1572962.
JD198115 - Sequence 179139 from Patent EP1572962.
JD246970 - Sequence 227994 from Patent EP1572962.
JD100553 - Sequence 81577 from Patent EP1572962.
JD425515 - Sequence 406539 from Patent EP1572962.
JD083122 - Sequence 64146 from Patent EP1572962.
JD266495 - Sequence 247519 from Patent EP1572962.
JD178671 - Sequence 159695 from Patent EP1572962.
JD465866 - Sequence 446890 from Patent EP1572962.
JD158006 - Sequence 139030 from Patent EP1572962.
JD540620 - Sequence 521644 from Patent EP1572962.
JD443735 - Sequence 424759 from Patent EP1572962.
JD071119 - Sequence 52143 from Patent EP1572962.
JD194321 - Sequence 175345 from Patent EP1572962.
JD194322 - Sequence 175346 from Patent EP1572962.
JD401448 - Sequence 382472 from Patent EP1572962.
JD445083 - Sequence 426107 from Patent EP1572962.
JD341874 - Sequence 322898 from Patent EP1572962.
JD447693 - Sequence 428717 from Patent EP1572962.
JD085123 - Sequence 66147 from Patent EP1572962.
JD249581 - Sequence 230605 from Patent EP1572962.
JD378029 - Sequence 359053 from Patent EP1572962.
JD354068 - Sequence 335092 from Patent EP1572962.
JD269706 - Sequence 250730 from Patent EP1572962.
JD518133 - Sequence 499157 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_024616, uc004dhl.1, uc004dhl.2, uc004dhl.3, uc004dhl.4
UCSC ID: ENST00000456273.1
RefSeq Accession: NR_024616

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.