Human Gene COA8 (ENST00000409074.8) from GENCODE V44
  Description: Homo sapiens cytochrome c oxidase assembly factor 8 (COA8), transcript variant 6, non-coding RNA. (from RefSeq NR_126431)
RefSeq Summary (NM_001302653): This gene encodes a protein that localizes to the mitochondria, where it stimulates the release of cytochrome c, thereby promoting programmed cell death. Mutations in this gene have been found in individuals with mitochondrial complex IV deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014].
Gencode Transcript: ENST00000409074.8
Gencode Gene: ENSG00000256053.9
Transcript (Including UTRs)
   Position: hg38 chr14:103,562,960-103,590,896 Size: 27,937 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr14:103,563,002-103,590,286 Size: 27,285 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersRNA-Seq ExpressionRNA StructureOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:103,562,960-103,590,896)mRNA (may differ from genome)Protein (193 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsMalacards
MGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.76 RPKM in Testis
Total median expression: 211.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.4042-0.438 Picture PostScript Text
3' UTR -219.30610-0.360 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD Ensembl  
Protein SequenceProtein Sequence Protein Sequence  
AlignmentAlignment Alignment  

-  Descriptions from all associated GenBank mRNAs
  AK299527 - Homo sapiens cDNA FLJ55519 complete cds, highly similar to Kinesin light chain 1.
AK223092 - Homo sapiens mRNA for chromosome 14 open reading frame 153 variant, clone: KAT05013.
AK223103 - Homo sapiens mRNA for chromosome 14 open reading frame 153 variant, clone: KAT05630.
BC007412 - Homo sapiens chromosome 14 open reading frame 153, mRNA (cDNA clone MGC:2562 IMAGE:2989951), complete cds.
KJ903420 - Synthetic construct Homo sapiens clone ccsbBroadEn_12814 APOPT1 gene, encodes complete protein.
JD325678 - Sequence 306702 from Patent EP1572962.
JD420295 - Sequence 401319 from Patent EP1572962.
JD490204 - Sequence 471228 from Patent EP1572962.
JD218134 - Sequence 199158 from Patent EP1572962.
JD483100 - Sequence 464124 from Patent EP1572962.
JD531463 - Sequence 512487 from Patent EP1572962.
JD286918 - Sequence 267942 from Patent EP1572962.
JD286919 - Sequence 267943 from Patent EP1572962.
JD084801 - Sequence 65825 from Patent EP1572962.
JD354410 - Sequence 335434 from Patent EP1572962.
JD388275 - Sequence 369299 from Patent EP1572962.
JD351542 - Sequence 332566 from Patent EP1572962.
JD522719 - Sequence 503743 from Patent EP1572962.
JD139774 - Sequence 120798 from Patent EP1572962.
JD451490 - Sequence 432514 from Patent EP1572962.
JD364522 - Sequence 345546 from Patent EP1572962.
JD366219 - Sequence 347243 from Patent EP1572962.
JD517291 - Sequence 498315 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A6Q8JUI0, ENST00000409074.1, ENST00000409074.2, ENST00000409074.3, ENST00000409074.4, ENST00000409074.5, ENST00000409074.6, ENST00000409074.7, NR_126431, uc010tyc.1, uc010tyc.2, uc010tyc.3, uc010tyc.4
UCSC ID: ENST00000409074.8
RefSeq Accession: NM_001302653

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.