Human Gene PARVG (ENST00000422871.5) from GENCODE V44
  Description: Homo sapiens parvin gamma (PARVG), transcript variant 2, mRNA. (from RefSeq NM_001137605)
RefSeq Summary (NM_001137605): Members of the parvin family, including PARVG, are actin-binding proteins associated with focal contacts.[supplied by OMIM, Aug 2004].
Gencode Transcript: ENST00000422871.5
Gencode Gene: ENSG00000138964.17
Transcript (Including UTRs)
   Position: hg38 chr22:44,172,956-44,208,468 Size: 35,513 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr22:44,183,330-44,206,426 Size: 23,097 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:44,172,956-44,208,468)mRNA (may differ from genome)Protein (331 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCHPRDLynxMGIneXtProtOMIM
PubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PARVG_HUMAN
DESCRIPTION: RecName: Full=Gamma-parvin;
FUNCTION: Probably plays a role in the regulation of cell adhesion and cytoskeleton organization (By similarity).
SUBUNIT: Interacts with integrin-linked protein kinase and actin (By similarity).
SUBCELLULAR LOCATION: Cell junction, focal adhesion. Cell membrane; Peripheral membrane protein; Cytoplasmic side (By similarity). Cytoplasm, cytoskeleton (By similarity). Note=Constituent of focal adhesions (By similarity).
TISSUE SPECIFICITY: Expressed predominantly in lymphoid organs, including spleen, thymus, lymph node, bone marrow and peripheral blood leukocytes and moderately in the digestive tract, including stomach, duodenum, jejunum, ileum, ileocecum and appendix, as well as in lung and liver. Also expressed in tumors, but at a lower level than in the corresponding normal tissues.
SIMILARITY: Belongs to the parvin family.
SIMILARITY: Contains 2 CH (calponin-homology) domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.70 RPKM in Spleen
Total median expression: 174.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -180.60424-0.426 Picture PostScript Text
3' UTR -898.002042-0.440 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001715 - CH-domain

Pfam Domains:
PF00307 - Calponin homology (CH) domain

ModBase Predicted Comparative 3D Structure on Q9HBI0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
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Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding

Biological Process:
GO:0007155 cell adhesion
GO:0007160 cell-matrix adhesion
GO:0031532 actin cytoskeleton reorganization

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0016020 membrane
GO:0030054 cell junction


-  Descriptions from all associated GenBank mRNAs
  AK309348 - Homo sapiens cDNA, FLJ99389.
AK293360 - Homo sapiens cDNA FLJ60417 complete cds, weakly similar to Gamma-parvin.
AK225929 - Homo sapiens mRNA for parvin, gamma variant, clone: FCC117F03.
AK307294 - Homo sapiens cDNA, FLJ97242.
BC034406 - Homo sapiens parvin, gamma, mRNA (cDNA clone MGC:35319 IMAGE:5178529), complete cds.
AF237772 - Homo sapiens gamma-parvin (PARVG) mRNA, complete cds.
AK307299 - Homo sapiens cDNA, FLJ97247.
AK311264 - Homo sapiens cDNA, FLJ18306.
AL355092 - Novel human gene mapping to chomosome 22.
JD395208 - Sequence 376232 from Patent EP1572962.
JD495838 - Sequence 476862 from Patent EP1572962.
JD106489 - Sequence 87513 from Patent EP1572962.
CR456480 - Homo sapiens dJ671O14.2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.dJ671O14.2).
AK310087 - Homo sapiens cDNA, FLJ17129.
AL590887 - Novel human CDS from chromosome 22, splice variant of Homo sapiens gamma-parvin (PARVG) mRNA (AF237772).
AB528203 - Synthetic construct DNA, clone: pF1KE0513, Homo sapiens PARVG gene for parvin, gamma, without stop codon, in Flexi system.
CU013318 - Homo sapiens PARVG, mRNA (cDNA clone IMAGE:100000192), complete cds, without stop codon, in Gateway system.
KJ899438 - Synthetic construct Homo sapiens clone ccsbBroadEn_08832 PARVG gene, encodes complete protein.
CU013030 - Homo sapiens PARVG, mRNA (cDNA clone IMAGE:100000288), complete cds, with stop codon, in Gateway system.
CU689882 - Synthetic construct Homo sapiens gateway clone IMAGE:100023221 5' read PARVG mRNA.
BX648942 - Homo sapiens mRNA; cDNA DKFZp686A2248 (from clone DKFZp686A2248).
JD335262 - Sequence 316286 from Patent EP1572962.
JD457040 - Sequence 438064 from Patent EP1572962.
JD387845 - Sequence 368869 from Patent EP1572962.
JD183410 - Sequence 164434 from Patent EP1572962.
JD564640 - Sequence 545664 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04510 - Focal adhesion

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000422871.1, ENST00000422871.2, ENST00000422871.3, ENST00000422871.4, NM_001137605, PARVG_HUMAN, Q9BQX5, Q9HBI0, Q9NSG1, uc011aqe.1, uc011aqe.2, uc011aqe.3, uc011aqe.4
UCSC ID: ENST00000422871.5
RefSeq Accession: NM_001137605
Protein: Q9HBI0 (aka PARVG_HUMAN or PAVG_HUMAN)
CCDS: CCDS14057.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.