Mouse Gene Rho (ENSMUST00000203877.1) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Rho (from geneSymbol)
Gencode Transcript: ENSMUST00000203877.1
Gencode Gene: ENSMUSG00000030324.8
Transcript (Including UTRs)
   Position: mm10 chr6:115,934,341-115,936,952 Size: 2,612 Total Exon Count: 4 Strand: +
Coding Region
   Position: mm10 chr6:115,934,477-115,936,719 Size: 2,243 Coding Exon Count: 4 

Page IndexSequence and LinksCTDRNA StructureOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-19

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:115,934,341-115,936,952)mRNA (may differ from genome)Protein (189 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsPubMedStanford SOURCE
UniProtKBWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.50136-0.232 Picture PostScript Text
3' UTR -66.90233-0.287 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AK044333 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930007N17 product:RHODOPSIN, full insert sequence.
AK044412 - Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930011G12 product:RHODOPSIN, full insert sequence.
BC094460 - Mus musculus rhodopsin, mRNA (cDNA clone IMAGE:4482012).
BC031766 - Mus musculus rhodopsin, mRNA (cDNA clone MGC:25387 IMAGE:4527040), complete cds.
BC013125 - Mus musculus rhodopsin, mRNA (cDNA clone MGC:21585 IMAGE:4500760), complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04744 - Phototransduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0N4SV48, BC031766, uc291ias.1
UCSC ID: uc291ias.1
RefSeq Accession: NM_145383

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.