Human Gene SLC2A5 (ENST00000377424.9) from GENCODE V44
  Description: Homo sapiens solute carrier family 2 member 5 (SLC2A5), transcript variant 1, mRNA. (from RefSeq NM_003039)
RefSeq Summary (NM_003039): The protein encoded by this gene is a fructose transporter responsible for fructose uptake by the small intestine. The encoded protein also is necessary for the increase in blood pressure due to high dietary fructose consumption. [provided by RefSeq, Jun 2016].
Gencode Transcript: ENST00000377424.9
Gencode Gene: ENSG00000142583.18
Transcript (Including UTRs)
   Position: hg38 chr1:9,035,106-9,069,635 Size: 34,530 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg38 chr1:9,037,586-9,069,536 Size: 31,951 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:9,035,106-9,069,635)mRNA (may differ from genome)Protein (501 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GTR5_HUMAN
DESCRIPTION: RecName: Full=Solute carrier family 2, facilitated glucose transporter member 5; AltName: Full=Fructose transporter; AltName: Full=Glucose transporter type 5, small intestine; Short=GLUT-5;
FUNCTION: Cytochalasin B-sensitive carrier. Seems to function primarily as a fructose transporter.
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in small intestine, and at much lower levels in kidney, skeletal muscle, and adipose tissue.
INDUCTION: By forskolin in Caco-2 cells.
MASS SPECTROMETRY: Mass=54973.98; Method=MALDI; Range=1-501; Source=PubMed:11840567;
SIMILARITY: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. Glucose transporter subfamily.
SEQUENCE CAUTION: Sequence=AAB60641.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC2A5
Diseases sorted by gene-association score: testis seminoma (11), hemophagocytic lymphohistiocytosis, familial, 5 (9), testicular malignant germ cell cancer (9)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.20 RPKM in Testis
Total median expression: 115.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.2099-0.305 Picture PostScript Text
3' UTR -928.002480-0.374 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002442 - Fru_transpt_5
IPR020846 - MFS_dom
IPR016196 - MFS_dom_general_subst_transpt
IPR005828 - Sub_transporter
IPR003663 - Sugar/inositol_transpt
IPR005829 - Sugar_transporter_CS

Pfam Domains:
PF00083 - Sugar (and other) transporter

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1YG1 - Model


ModBase Predicted Comparative 3D Structure on P22732
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0005353 fructose transmembrane transporter activity
GO:0005355 glucose transmembrane transporter activity
GO:0022857 transmembrane transporter activity
GO:0070061 fructose binding

Biological Process:
GO:0003044 regulation of systemic arterial blood pressure mediated by a chemical signal
GO:0005975 carbohydrate metabolic process
GO:0008643 carbohydrate transport
GO:0009750 response to fructose
GO:0015755 fructose transport
GO:0043312 neutrophil degranulation
GO:0055085 transmembrane transport
GO:0071332 cellular response to fructose stimulus
GO:1904659 glucose transmembrane transport
GO:1990539 fructose import across plasma membrane

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016324 apical plasma membrane
GO:0035579 specific granule membrane
GO:0042383 sarcolemma
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC001692 - Homo sapiens solute carrier family 2 (facilitated glucose/fructose transporter), member 5, mRNA (cDNA clone MGC:1619 IMAGE:2966459), complete cds.
BC001820 - Homo sapiens solute carrier family 2 (facilitated glucose/fructose transporter), member 5, mRNA (cDNA clone MGC:3654 IMAGE:2966459), complete cds.
M55531 - Human glucose transport-like 5 (GLUT5) mRNA, complete cds.
AK302057 - Homo sapiens cDNA FLJ55285 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 5.
AK300477 - Homo sapiens cDNA FLJ50679 complete cds, highly similar to Solute carrier family 2, facilitated glucosetransporter member 5.
AK302137 - Homo sapiens cDNA FLJ55286 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 5.
AK294368 - Homo sapiens cDNA FLJ51824 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 5.
AK290398 - Homo sapiens cDNA FLJ76249 complete cds, highly similar to Homo sapiens solute carrier family 2 (facilitated glucose/fructose transporter), member 5 (SLC2A5), mRNA.
AK300091 - Homo sapiens cDNA FLJ50662 complete cds, highly similar to Solute carrier family 2, facilitated glucosetransporter member 5.
AK302047 - Homo sapiens cDNA FLJ52355 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 5.
KJ892149 - Synthetic construct Homo sapiens clone ccsbBroadEn_01543 SLC2A5 gene, encodes complete protein.
DQ892291 - Synthetic construct clone IMAGE:100004921; FLH184926.01X; RZPDo839D05146D solute carrier family 2 (facilitated glucose/fructose transporter), member 5 (SLC2A5) gene, encodes complete protein.
DQ895491 - Synthetic construct Homo sapiens clone IMAGE:100009951; FLH184922.01L; RZPDo839D05145D solute carrier family 2 (facilitated glucose/fructose transporter), member 5 (SLC2A5) gene, encodes complete protein.
BC035878 - Homo sapiens solute carrier family 2 (facilitated glucose/fructose transporter), member 5, mRNA (cDNA clone IMAGE:4520699), complete cds.
AK289849 - Homo sapiens cDNA FLJ75217 complete cds, highly similar to Homo sapiens solute carrier family 2 (facilitated glucose/fructose transporter), member 5, mRNA.
HM005394 - Homo sapiens clone HTL-T-81 testicular tissue protein Li 81 mRNA, complete cds.
AK295785 - Homo sapiens cDNA FLJ50540 complete cds, highly similar to Solute carrier family 2, facilitated glucose transporter member 5.
KJ892150 - Synthetic construct Homo sapiens clone ccsbBroadEn_01544 SLC2A5 gene, encodes complete protein.
CU674838 - Synthetic construct Homo sapiens gateway clone IMAGE:100020328 5' read SLC2A5 mRNA.
AF451839 - Homo sapiens glucose transporter-like protein V-like protein mRNA, partial sequence.
AF479408 - Homo sapiens glucose transporter-like protein 5 mRNA, partial cds.
DQ590695 - Homo sapiens piRNA piR-57807, complete sequence.
JD431369 - Sequence 412393 from Patent EP1572962.
JD251686 - Sequence 232710 from Patent EP1572962.
JD557685 - Sequence 538709 from Patent EP1572962.
JD556719 - Sequence 537743 from Patent EP1572962.
JD428177 - Sequence 409201 from Patent EP1572962.
JD184863 - Sequence 165887 from Patent EP1572962.
JD168842 - Sequence 149866 from Patent EP1572962.
JD286362 - Sequence 267386 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P22732 (Reactome details) participates in the following event(s):

R-HSA-6799350 Exocytosis of specific granule membrane proteins
R-HSA-189222 SLC2A5 transports fructose from extracellular region to cytosol
R-HSA-6798695 Neutrophil degranulation
R-HSA-8981373 Intestinal hexose absorption
R-HSA-168249 Innate Immune System
R-HSA-8963676 Intestinal absorption
R-HSA-168256 Immune System
R-HSA-8963743 Digestion and absorption

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000377424.1, ENST00000377424.2, ENST00000377424.3, ENST00000377424.4, ENST00000377424.5, ENST00000377424.6, ENST00000377424.7, ENST00000377424.8, GLUT5, GTR5_HUMAN, NM_003039, P22732, Q14770, Q5T977, Q8IVB3, uc001apo.1, uc001apo.2, uc001apo.3, uc001apo.4, uc001apo.5
UCSC ID: ENST00000377424.9
RefSeq Accession: NM_003039
Protein: P22732 (aka GTR5_HUMAN)
CCDS: CCDS99.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.