Human Gene NIT1 (ENST00000368009.7) from GENCODE V44
  Description: Homo sapiens nitrilase 1 (NIT1), transcript variant 1, mRNA. (from RefSeq NM_005600)
RefSeq Summary (NM_005600): This gene encodes a member of the nitrilase protein family with homology to bacterial and plant nitrilases, enzymes that cleave nitriles and organic amides to the corresponding carboxylic acids plus ammonia. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2010].
Gencode Transcript: ENST00000368009.7
Gencode Gene: ENSG00000158793.14
Transcript (Including UTRs)
   Position: hg38 chr1:161,118,105-161,121,194 Size: 3,090 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg38 chr1:161,118,177-161,120,765 Size: 2,589 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:161,118,105-161,121,194)mRNA (may differ from genome)Protein (327 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NIT1_HUMAN
DESCRIPTION: RecName: Full=Nitrilase homolog 1; EC=3.5.-.-;
FUNCTION: Plays a role in cell growth and apoptosis: loss of expression promotes cell growth and resistance to DNA damage stress. Has tumor suppressor properties that enhances the apoptotic responsiveness in cancer cells; this effect is additive to the tumor suppressor activity of FHIT. It is also a negative regulator of primary T-cells. Has apparently no omega-amidase activity such as NIT2 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Mitochondrion (By similarity).
TISSUE SPECIFICITY: Detected in heart, brain, placenta, liver, skeletal muscle, kidney and pancreas.
MISCELLANEOUS: According to Rosetta Stone theory, the existence of a fusion protein in one genome predicts that the separate polypeptides expressed in other organisms function in the same cellular or biochemical pathway. In Drosophila melanogaster and Caenorhabditis elegans, NitFhit is a fusion protein composed of a C-terminal Fhit domain and a domain related to plant and bacterial nitrilase.
SIMILARITY: Belongs to the UPF0012 family.
SIMILARITY: Contains 1 CN hydrolase domain.
SEQUENCE CAUTION: Sequence=AAH46149.1; Type=Miscellaneous discrepancy; Note=Chimeric cDNA. Its C-terminal exon is derived from the last exon of the DEDD gene;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.60 RPKM in Adrenal Gland
Total median expression: 853.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.7072-0.246 Picture PostScript Text
3' UTR -124.30429-0.290 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003010 - C-N_Hydrolase
IPR001110 - UPF0012_CS

Pfam Domains:
PF00795 - Carbon-nitrogen hydrolase

ModBase Predicted Comparative 3D Structure on Q86X76
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologGenome BrowserGenome BrowserGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
MGIRGDEnsemblEnsemblWormBaseSGD
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence
AlignmentAlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000257 nitrilase activity
GO:0016787 hydrolase activity

Biological Process:
GO:0006807 nitrogen compound metabolic process
GO:0008150 biological_process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion


-  Descriptions from all associated GenBank mRNAs
  LF205460 - JP 2014500723-A/12963: Polycomb-Associated Non-Coding RNAs.
MA441037 - JP 2018138019-A/12963: Polycomb-Associated Non-Coding RNAs.
AF069987 - Homo sapiens nitrilase 1 (NIT1) mRNA, complete cds.
AK313323 - Homo sapiens cDNA, FLJ93841, highly similar to Homo sapiens nitrilase 1 (NIT1), mRNA.
BC046149 - Homo sapiens nitrilase 1, mRNA (cDNA clone MGC:57670 IMAGE:5764281), complete cds.
LF213845 - JP 2014500723-A/21348: Polycomb-Associated Non-Coding RNAs.
MA449422 - JP 2018138019-A/21348: Polycomb-Associated Non-Coding RNAs.
DQ576959 - Homo sapiens piRNA piR-45071, complete sequence.
AK296606 - Homo sapiens cDNA FLJ50791 complete cds, highly similar to Nitrilase homolog 1 (EC 3.5.-.-).
BC039150 - Homo sapiens mRNA similar to nitrilase 1 (cDNA clone IMAGE:4755232).
CU692312 - Synthetic construct Homo sapiens gateway clone IMAGE:100021307 5' read NIT1 mRNA.
CR541846 - Homo sapiens full open reading frame cDNA clone RZPDo834F0132D for gene NIT1, nitrilase 1; complete cds, without stopcodon.
CR541814 - Homo sapiens full open reading frame cDNA clone RZPDo834F1231D for gene NIT1, nitrilase 1; complete cds, incl. stopcodon.
KJ897248 - Synthetic construct Homo sapiens clone ccsbBroadEn_06642 NIT1 gene, encodes complete protein.
LF320735 - JP 2014500723-A/128238: Polycomb-Associated Non-Coding RNAs.
MA556312 - JP 2018138019-A/128238: Polycomb-Associated Non-Coding RNAs.
DQ580136 - Homo sapiens piRNA piR-48248, complete sequence.
DQ590375 - Homo sapiens piRNA piR-57487, complete sequence.
JD429387 - Sequence 410411 from Patent EP1572962.
JD326764 - Sequence 307788 from Patent EP1572962.
JD081686 - Sequence 62710 from Patent EP1572962.
JD173043 - Sequence 154067 from Patent EP1572962.
JD456631 - Sequence 437655 from Patent EP1572962.
JD166673 - Sequence 147697 from Patent EP1572962.
JD059910 - Sequence 40934 from Patent EP1572962.
LF320734 - JP 2014500723-A/128237: Polycomb-Associated Non-Coding RNAs.
MA556311 - JP 2018138019-A/128237: Polycomb-Associated Non-Coding RNAs.
JD218200 - Sequence 199224 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B1AQP3, D3DVF4, ENST00000368009.1, ENST00000368009.2, ENST00000368009.3, ENST00000368009.4, ENST00000368009.5, ENST00000368009.6, NIT1_HUMAN, NM_005600, O76091, Q86X76, uc001fxv.1, uc001fxv.2, uc001fxv.3, uc001fxv.4
UCSC ID: ENST00000368009.7
RefSeq Accession: NM_005600
Protein: Q86X76 (aka NIT1_HUMAN)
CCDS: CCDS1218.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.