Human Gene PPP3CB (ENST00000360663.10) from GENCODE V44
  Description: Homo sapiens protein phosphatase 3 catalytic subunit beta (PPP3CB), transcript variant 2, mRNA. (from RefSeq NM_021132)
Gencode Transcript: ENST00000360663.10
Gencode Gene: ENSG00000107758.16
Transcript (Including UTRs)
   Position: hg38 chr10:73,436,433-73,496,024 Size: 59,592 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg38 chr10:73,438,242-73,495,889 Size: 57,648 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:73,436,433-73,496,024)mRNA (may differ from genome)Protein (524 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PP2BB_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform; EC=3.1.3.16; AltName: Full=CAM-PRP catalytic subunit; AltName: Full=Calmodulin-dependent calcineurin A subunit beta isoform;
FUNCTION: Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
COFACTOR: Binds 1 Fe(3+) ion per subunit (By similarity).
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
SUBUNIT: Composed of two components (A and B), the A component is the catalytic subunit and the B component confers calcium sensitivity.
INTERACTION: Q99J34:Irak1 (xeno); NbExp=2; IntAct=EBI-1759540, EBI-6117042; P14316:IRF2; NbExp=2; IntAct=EBI-1759540, EBI-2866589;
SIMILARITY: Belongs to the PPP phosphatase family. PP-2B subfamily.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PPP3CB
Diseases sorted by gene-association score: cardiomyopathy, familial hypertrophic (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.97 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 828.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.50135-0.404 Picture PostScript Text
3' UTR -455.601809-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004843 - Metallo_PEstase_dom
IPR006186 - Ser/Thr-sp_prot-phosphatase

Pfam Domains:
PF00149 - Calcineurin-like phosphoesterase

ModBase Predicted Comparative 3D Structure on P16298
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004722 protein serine/threonine phosphatase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0008144 drug binding
GO:0016787 hydrolase activity
GO:0019899 enzyme binding
GO:0030346 protein phosphatase 2B binding
GO:0033192 calmodulin-dependent protein phosphatase activity
GO:0046872 metal ion binding
GO:0046983 protein dimerization activity

Biological Process:
GO:0001915 negative regulation of T cell mediated cytotoxicity
GO:0001946 lymphangiogenesis
GO:0006468 protein phosphorylation
GO:0006470 protein dephosphorylation
GO:0007165 signal transduction
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0007507 heart development
GO:0007612 learning
GO:0007613 memory
GO:0010468 regulation of gene expression
GO:0016311 dephosphorylation
GO:0017156 calcium ion regulated exocytosis
GO:0030217 T cell differentiation
GO:0031987 locomotion involved in locomotory behavior
GO:0033173 calcineurin-NFAT signaling cascade
GO:0034097 response to cytokine
GO:0035176 social behavior
GO:0035690 cellular response to drug
GO:0035774 positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0038095 Fc-epsilon receptor signaling pathway
GO:0042098 T cell proliferation
GO:0042110 T cell activation
GO:0043029 T cell homeostasis
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048167 regulation of synaptic plasticity
GO:0048675 axon extension
GO:0050796 regulation of insulin secretion

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005955 calcineurin complex
GO:0030018 Z disc
GO:0030315 T-tubule


-  Descriptions from all associated GenBank mRNAs
  BC035464 - Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform, mRNA (cDNA clone IMAGE:4540083).
BC028049 - Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform, mRNA (cDNA clone MGC:39903 IMAGE:4538822), complete cds.
AJ488506 - Homo sapiens mRNA for protein phosphatase 3 catalytic subunit beta3 (PPP3CB gene).
M29551 - Human calcineurin A2 mRNA, complete cds.
JD376576 - Sequence 357600 from Patent EP1572962.
JD166419 - Sequence 147443 from Patent EP1572962.
JD279446 - Sequence 260470 from Patent EP1572962.
AK300701 - Homo sapiens cDNA FLJ53100 complete cds, highly similar to Serine/threonine-protein phosphatase 2Bcatalytic subunit beta isoform (EC 3.1.3.16).
JD344504 - Sequence 325528 from Patent EP1572962.
JD090229 - Sequence 71253 from Patent EP1572962.
JD291358 - Sequence 272382 from Patent EP1572962.
JD494643 - Sequence 475667 from Patent EP1572962.
JD475571 - Sequence 456595 from Patent EP1572962.
JD315558 - Sequence 296582 from Patent EP1572962.
JD294559 - Sequence 275583 from Patent EP1572962.
JD140784 - Sequence 121808 from Patent EP1572962.
JD523642 - Sequence 504666 from Patent EP1572962.
JD291685 - Sequence 272709 from Patent EP1572962.
JD391294 - Sequence 372318 from Patent EP1572962.
JD320513 - Sequence 301537 from Patent EP1572962.
JD456711 - Sequence 437735 from Patent EP1572962.
JD060007 - Sequence 41031 from Patent EP1572962.
KJ891874 - Synthetic construct Homo sapiens clone ccsbBroadEn_01268 PPP3CB gene, encodes complete protein.
AB489159 - Synthetic construct DNA, clone: pF1KB4148, Homo sapiens PPP3CB gene for protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform, without stop codon, in Flexi system.
AB209251 - Homo sapiens mRNA for Na+/K+ -ATPase alpha 3 subunit variant protein.
M29550 - Human calcineurin A1 mRNA, complete cds.
AK301582 - Homo sapiens cDNA FLJ60928 complete cds, highly similar to Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform (EC 3.1.3.16).

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway
hsa04020 - Calcium signaling pathway
hsa04114 - Oocyte meiosis
hsa04210 - Apoptosis
hsa04310 - Wnt signaling pathway
hsa04360 - Axon guidance
hsa04370 - VEGF signaling pathway
hsa04650 - Natural killer cell mediated cytotoxicity
hsa04660 - T cell receptor signaling pathway
hsa04662 - B cell receptor signaling pathway
hsa04720 - Long-term potentiation
hsa05010 - Alzheimer's disease
hsa05014 - Amyotrophic lateral sclerosis (ALS)

BioCarta from NCI Cancer Genome Anatomy Project
h_fMLPpathway - fMLP induced chemokine gene expression in HMC-1 cells
h_mef2dPathway - Role of MEF2D in T-cell Apoptosis
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)
h_ndkDynaminPathway - Endocytotic role of NDK, Phosphins and Dynamin
h_tcrPathway - T Cell Receptor Signaling Pathway
h_bcrPathway - BCR Signaling Pathway
h_calcineurinPathway - Effects of calcineurin in Keratinocyte Differentiation
h_pgc1aPathway - Regulation of PGC-1a
h_hdacPathway - Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK)
h_vipPathway - Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells
h_fcer1Pathway - Fc Epsilon Receptor I Signaling in Mast Cells
h_gpcrPathway - Signaling Pathway from G-Protein Families
h_nos1Pathway - Nitric Oxide Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein P16298 (Reactome details) participates in the following event(s):

R-HSA-9010645 AKAP5 recruits PPP3CB (PP2BB) to ROBO2
R-HSA-201783 Inactive catalytic PP2B is activated by the binding of calmodulin
R-HSA-2025890 Calcineurin binds NFATC1,2,3
R-HSA-2730872 Activation of Calcineurin
R-HSA-201787 PPP3 complex dephosphorylates DARPP-32 on Thr34
R-HSA-4551451 Calcineurin binds and dephosphorylates NFAT1 in response to WNT/Ca2+ signaling
R-HSA-2730867 Translocation of CaN:CaM:NFAT to nucleus
R-HSA-9010642 ROBO receptors bind AKAP5
R-HSA-376176 Signaling by ROBO receptors
R-HSA-180024 DARPP-32 events
R-HSA-422475 Axon guidance
R-HSA-111885 Opioid Signalling
R-HSA-2025928 Calcineurin activates NFAT
R-HSA-2871809 FCERI mediated Ca+2 mobilization
R-HSA-4086398 Ca2+ pathway
R-HSA-5607763 CLEC7A (Dectin-1) induces NFAT activation
R-HSA-1266738 Developmental Biology
R-HSA-418594 G alpha (i) signalling events
R-HSA-1168372 Downstream signaling events of B Cell Receptor (BCR)
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-5607764 CLEC7A (Dectin-1) signaling
R-HSA-388396 GPCR downstream signalling
R-HSA-983705 Signaling by the B Cell Receptor (BCR)
R-HSA-168249 Innate Immune System
R-HSA-195721 Signaling by WNT
R-HSA-5621481 C-type lectin receptors (CLRs)
R-HSA-372790 Signaling by GPCR
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: CALNA2, CALNB, CNA2, ENST00000360663.1, ENST00000360663.2, ENST00000360663.3, ENST00000360663.4, ENST00000360663.5, ENST00000360663.6, ENST00000360663.7, ENST00000360663.8, ENST00000360663.9, NM_021132, P16298, P16299, PP2BB_HUMAN, Q5F2F9, Q8N1F0, Q8N3W4, uc001jue.1, uc001jue.2, uc001jue.3, uc001jue.4, uc001jue.5
UCSC ID: ENST00000360663.10
RefSeq Accession: NM_021132
Protein: P16298 (aka PP2BB_HUMAN)
CCDS: CCDS7328.1, CCDS44436.1, CCDS44437.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.