Human Gene STK38L (ENST00000389032.8) from GENCODE V44
  Description: Homo sapiens serine/threonine kinase 38 like (STK38L), mRNA. (from RefSeq NM_015000)
Gencode Transcript: ENST00000389032.8
Gencode Gene: ENSG00000211455.8
Transcript (Including UTRs)
   Position: hg38 chr12:27,244,286-27,325,959 Size: 81,674 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr12:27,297,721-27,322,455 Size: 24,735 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:27,244,286-27,325,959)mRNA (may differ from genome)Protein (464 aa)
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-  Comments and Description Text from UniProtKB
  ID: ST38L_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 38-like; EC=2.7.11.1; AltName: Full=NDR2 protein kinase; AltName: Full=Nuclear Dbf2-related kinase 2;
FUNCTION: Involved in the regulation of structural processes in differentiating and mature neuronal cells (By similarity).
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by binding of S100B which releases autoinhibitory N-lobe interactions, enabling ATP to bind and the autophosphorylation of Ser-282. Thr-442 then undergoes calcium- dependent phosphorylation by STK24/MST3. Interactions between phosphorylated Thr-442 and the N-lobe promote additional structural changes that complete the activation of the kinase. Autoinhibition is also released by the binding of MOB1/MOBKL1A and MOB2/HCCA2 to the N-terminal of STK38L.
SUBUNIT: Homodimeric S100B binds two molecules of STK38L. Interacts with MICAL1; leading to inhibit the protein kinase activity by antagonizing activation by MST1/STK4 (By similarity). Interacts with MOB1 and MOB2.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton. Membrane. Note=Associated with the actin cytoskeleton. Co- localizes with STK24/MST3 in the membrane.
TISSUE SPECIFICITY: Ubiquitously expressed with highest levels observed in the thymus.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.29 RPKM in Artery - Aorta
Total median expression: 493.89 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.8058-0.462 Picture PostScript Text
3' UTR -777.103504-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00433 - Protein kinase C terminal domain

ModBase Predicted Comparative 3D Structure on Q9Y2H1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
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AlignmentAlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0003779 actin binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0035556 intracellular signal transduction
GO:0051128 regulation of cellular component organization

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0015629 actin cytoskeleton
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AB023182 - Homo sapiens KIAA0965 mRNA for KIAA0965 protein.
BC028603 - Homo sapiens serine/threonine kinase 38 like, mRNA (cDNA clone MGC:33176 IMAGE:4823429), complete cds.
AK291055 - Homo sapiens cDNA FLJ76809 complete cds, highly similar to Homo sapiens serine/threonine kinase 38 like (STK38L), mRNA.
AK304755 - Homo sapiens cDNA FLJ50384 complete cds, highly similar to Serine/threonine-protein kinase 38-like (EC 2.7.11.1).
KJ898433 - Synthetic construct Homo sapiens clone ccsbBroadEn_07827 STK38L gene, encodes complete protein.
KJ905427 - Synthetic construct Homo sapiens clone ccsbBroadEn_15003 STK38L gene, encodes complete protein.
AB384065 - Synthetic construct DNA, clone: pF1KSDA0965, Homo sapiens STK38L gene for serine/threonine-protein kinase 38-like, complete cds, without stop codon, in Flexi system.
DQ891499 - Synthetic construct clone IMAGE:100004129; FLH177514.01X; RZPDo839B01126D serine/threonine kinase 38 like (STK38L) gene, encodes complete protein.
DQ894691 - Synthetic construct Homo sapiens clone IMAGE:100009151; FLH177510.01L; RZPDo839B01125D serine/threonine kinase 38 like (STK38L) gene, encodes complete protein.
AK304862 - Homo sapiens cDNA FLJ51774 complete cds, highly similar to Serine/threonine-protein kinase 38-like (EC 2.7.11.1).
AK303373 - Homo sapiens cDNA FLJ58893 complete cds, highly similar to Serine/threonine-protein kinase 38-like (EC 2.7.11.1).
BC014782 - Homo sapiens serine/threonine kinase 38 like, mRNA (cDNA clone IMAGE:3453536), with apparent retained intron.
JD166998 - Sequence 148022 from Patent EP1572962.
JD120079 - Sequence 101103 from Patent EP1572962.
JD422953 - Sequence 403977 from Patent EP1572962.
JD059877 - Sequence 40901 from Patent EP1572962.
JD091924 - Sequence 72948 from Patent EP1572962.
JD551448 - Sequence 532472 from Patent EP1572962.
JD311183 - Sequence 292207 from Patent EP1572962.
JD490440 - Sequence 471464 from Patent EP1572962.
JD298013 - Sequence 279037 from Patent EP1572962.
JD503195 - Sequence 484219 from Patent EP1572962.
JD486521 - Sequence 467545 from Patent EP1572962.
JD181391 - Sequence 162415 from Patent EP1572962.
JD221251 - Sequence 202275 from Patent EP1572962.
JD307777 - Sequence 288801 from Patent EP1572962.
JD093856 - Sequence 74880 from Patent EP1572962.
JD146471 - Sequence 127495 from Patent EP1572962.
JD166270 - Sequence 147294 from Patent EP1572962.
JD281174 - Sequence 262198 from Patent EP1572962.
JD237313 - Sequence 218337 from Patent EP1572962.
JD420006 - Sequence 401030 from Patent EP1572962.
JD176986 - Sequence 158010 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K4U0, ENST00000389032.1, ENST00000389032.2, ENST00000389032.3, ENST00000389032.4, ENST00000389032.5, ENST00000389032.6, ENST00000389032.7, KIAA0965, NDR2, NM_015000, Q8TBX7, Q9Y2H1, ST38L_HUMAN, uc001rhr.1, uc001rhr.2, uc001rhr.3, uc001rhr.4, uc001rhr.5
UCSC ID: ENST00000389032.8
RefSeq Accession: NM_015000
Protein: Q9Y2H1 (aka ST38L_HUMAN)
CCDS: CCDS31761.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.