Human Gene HOXC13 (ENST00000243056.5) from GENCODE V44
Description: Homo sapiens homeobox C13 (HOXC13), mRNA. (from RefSeq NM_017410) RefSeq Summary (NM_017410): This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXC genes located in a cluster on chromosome 12. The product of this gene may play a role in the development of hair, nail, and filiform papilla. [provided by RefSeq, Jul 2008]. Gencode Transcript: ENST00000243056.5 Gencode Gene: ENSG00000123364.5 Transcript (Including UTRs) Position: hg38 chr12:53,938,831-53,946,544 Size: 7,714 Total Exon Count: 2 Strand: + Coding Region Position: hg38 chr12:53,938,907-53,945,256 Size: 6,350 Coding Exon Count: 2
ID:HXC13_HUMAN DESCRIPTION: RecName: Full=Homeobox protein Hox-C13; AltName: Full=Homeobox protein Hox-3G; FUNCTION: Transcription factor which plays a role in hair follicle differentiation. Regulates FOXQ1 expression and that of other hair-specific genes (By similarity). INTERACTION: P32519:ELF1; NbExp=3; IntAct=EBI-2293590, EBI-765526; SUBCELLULAR LOCATION: Nucleus. SIMILARITY: Belongs to the Abd-B homeobox family. SIMILARITY: Contains 1 homeobox DNA-binding domain.
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF00046 - Homeobox domain PF12284 - Hox protein A13 N terminal
ModBase Predicted Comparative 3D Structure on P31276
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Molecular Function: GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding GO:0003677 DNA binding GO:0003682 chromatin binding GO:0005515 protein binding GO:0043565 sequence-specific DNA binding
Biological Process: GO:0001942 hair follicle development GO:0006351 transcription, DNA-templated GO:0006355 regulation of transcription, DNA-templated GO:0006366 transcription from RNA polymerase II promoter GO:0007275 multicellular organism development GO:0009653 anatomical structure morphogenesis GO:0009952 anterior/posterior pattern specification GO:0035878 nail development GO:0043587 tongue morphogenesis GO:0045944 positive regulation of transcription from RNA polymerase II promoter
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