Human Gene OASL (ENST00000257570.10) from GENCODE V44
  Description: Homo sapiens 2'-5'-oligoadenylate synthetase like (OASL), transcript variant 1, mRNA. (from RefSeq NM_003733)
Gencode Transcript: ENST00000257570.10
Gencode Gene: ENSG00000135114.14
Transcript (Including UTRs)
   Position: hg38 chr12:121,019,111-121,039,246 Size: 20,136 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg38 chr12:121,020,561-121,038,971 Size: 18,411 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:121,019,111-121,039,246)mRNA (may differ from genome)Protein (514 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
HPRDMalacardsMGIneXtProtOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OASL_HUMAN
DESCRIPTION: RecName: Full=2'-5'-oligoadenylate synthase-like protein; AltName: Full=2'-5'-OAS-related protein; Short=2'-5'-OAS-RP; AltName: Full=59 kDa 2'-5'-oligoadenylate synthase-like protein; AltName: Full=Thyroid receptor-interacting protein 14; Short=TR-interacting protein 14; Short=TRIP-14; AltName: Full=p59 OASL; Short=p59OASL;
FUNCTION: Does not have 2'-5'-OAS activity, but can bind double- stranded RNA. Displays antiviral activity against encephalomyocarditis virus (EMCV) and hepatitis C virus (HCV) via an alternative antiviral pathway independent of RNase L.
SUBUNIT: Specifically interacts with the ligand binding domain of the thyroid receptor (TR). TRIP14 does not require the presence of thyroid hormone for its interaction. Binds MBD1.
SUBCELLULAR LOCATION: Isoform p56: Nucleus, nucleolus. Cytoplasm.
SUBCELLULAR LOCATION: Isoform p30: Cytoplasm.
TISSUE SPECIFICITY: Expressed in most tissues, with the highest levels in primary blood Leukocytes and other hematopoietic system tissues, colon, stomach and to some extent in testis.
INDUCTION: By type I interferon (IFN) and viruses.
DOMAIN: The ubiquitin-like domains are essential for its antiviral activity.
SIMILARITY: Belongs to the 2-5A synthase family.
SIMILARITY: Contains 2 ubiquitin-like domains.
CAUTION: This is the ortholog of mouse OASL1.
SEQUENCE CAUTION: Sequence=AAC41733.1; Type=Frameshift; Positions=386;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: OASL
Diseases sorted by gene-association score: microphthalmia with limb anomalies (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.19 RPKM in Whole Blood
Total median expression: 49.83 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -103.90275-0.378 Picture PostScript Text
3' UTR -425.301450-0.293 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006117 - 2-5-oligoadenylate_synth_CS
IPR006116 - 2-5-oligoadenylate_synth_N
IPR018952 - 2-5-oligoAdlate_synth_1_dom2/C
IPR026774 - 2-5A_synthase
IPR000626 - Ubiquitin
IPR019955 - Ubiquitin_supergroup

Pfam Domains:
PF10421 - 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus
PF00240 - Ubiquitin family

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WH3 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q15646
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0003725 double-stranded RNA binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0046966 thyroid hormone receptor binding
GO:0001730 2'-5'-oligoadenylate synthetase activity

Biological Process:
GO:0002376 immune system process
GO:0006955 immune response
GO:0009615 response to virus
GO:0045071 negative regulation of viral genome replication
GO:0045087 innate immune response
GO:0051607 defense response to virus
GO:0060333 interferon-gamma-mediated signaling pathway
GO:0060337 type I interferon signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  JD150974 - Sequence 131998 from Patent EP1572962.
AJ225089 - Homo sapiens mRNA for 2'-5' oligoadenylate synthetase 59 kDa isoform.
AK023956 - Homo sapiens cDNA FLJ13894 fis, clone THYRO1001671, highly similar to 59 kDa 2'-5'-oligoadenylate synthetase-like protein.
AF063611 - Homo sapiens 2'-5'oligoadenylate synthetase-related protein p56 (OASL) mRNA, alternatively spliced, complete cds.
BC117408 - Homo sapiens 2'-5'-oligoadenylate synthetase-like, mRNA (cDNA clone MGC:151017 IMAGE:40125959), complete cds.
BC117410 - Homo sapiens 2'-5'-oligoadenylate synthetase-like, mRNA (cDNA clone MGC:151019 IMAGE:40125961), complete cds.
JD201495 - Sequence 182519 from Patent EP1572962.
JD139153 - Sequence 120177 from Patent EP1572962.
JD458142 - Sequence 439166 from Patent EP1572962.
JD144487 - Sequence 125511 from Patent EP1572962.
JD382324 - Sequence 363348 from Patent EP1572962.
JD144486 - Sequence 125510 from Patent EP1572962.
JD103389 - Sequence 84413 from Patent EP1572962.
JD175216 - Sequence 156240 from Patent EP1572962.
JQ792168 - Homo sapiens 2'-5'-oligoadenylate synthetase-like transcript variant 4 (OASLd) mRNA, complete cds, alternatively spliced.
AK314419 - Homo sapiens cDNA, FLJ95204, highly similar to Homo sapiens 2'-5'-oligoadenylate synthetase-like (OASL), mRNA.
HQ258301 - Synthetic construct Homo sapiens clone IMAGE:100072610 2'-5'-oligoadenylate synthetase-like (OASL) gene, encodes complete protein.
KJ897884 - Synthetic construct Homo sapiens clone ccsbBroadEn_07278 OASL gene, encodes complete protein.
AF063612 - Homo sapiens 2'-5'oligoadenylate synthetase-related protein p30 (OASL) mRNA, alternatively spliced, complete cds.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15646 (Reactome details) participates in the following event(s):

R-HSA-909733 Interferon alpha/beta signaling
R-HSA-877300 Interferon gamma signaling
R-HSA-913531 Interferon Signaling
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000257570.1, ENST00000257570.2, ENST00000257570.3, ENST00000257570.4, ENST00000257570.5, ENST00000257570.6, ENST00000257570.7, ENST00000257570.8, ENST00000257570.9, NM_003733, O75686, OASL_HUMAN, Q15646, Q17R95, Q9Y6K6, Q9Y6K7, TRIP14, uc001tzj.1, uc001tzj.2, uc001tzj.3, uc001tzj.4
UCSC ID: ENST00000257570.10
RefSeq Accession: NM_003733
Protein: Q15646 (aka OASL_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.