Human Gene MPHOSPH8 (ENST00000361479.10) from GENCODE V44
  Description: Homo sapiens M-phase phosphoprotein 8 (MPHOSPH8), mRNA. (from RefSeq NM_017520)
Gencode Transcript: ENST00000361479.10
Gencode Gene: ENSG00000196199.14
Transcript (Including UTRs)
   Position: hg38 chr13:19,633,659-19,673,441 Size: 39,783 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg38 chr13:19,633,749-19,671,875 Size: 38,127 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:19,633,659-19,673,441)mRNA (may differ from genome)Protein (860 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPP8_HUMAN
DESCRIPTION: RecName: Full=M-phase phosphoprotein 8; AltName: Full=Two hybrid-associated protein 3 with RanBPM; Short=Twa3;
FUNCTION: Involved in transcriptional regulation. Specifically recognizes and binds methylated 'Lys-9' of histone H3 (H3K9me) and promotes DNA methylation by recruiting DNMT3A to target CpG sites; these can be situated within the coding region of the gene. Mediates down-regulation of CDH1 expression.
SUBUNIT: Homodimer. Interacts (via chromo domain) with histone H3K9me3. Has the highest affinity for H3K9me3, and lesser affinity for H3K9me2 and H3K9me1. Interacts with DNMT3, EHMT1 and SETDB1.
SUBCELLULAR LOCATION: Nucleus. Note=Detected on heterochromatin. Detected on nucleosomes.
DOMAIN: The chromo domain mediates interaction with methylated 'Lys-9' of histone H3 (H3K9me), with the highest affinity for the trimethylated form (H3K9me3).
PTM: Phosphorylated in M (mitotic) phase.
SIMILARITY: Contains 4 ANK repeats.
SIMILARITY: Contains 1 chromo domain.
SEQUENCE CAUTION: Sequence=AAH46214.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAB71284.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=CAI46172.1; Type=Frameshift; Positions=248, 255, 731;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.41 RPKM in Ovary
Total median expression: 964.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.6090-0.373 Picture PostScript Text
3' UTR -591.401566-0.378 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom
IPR023780 - Chromo_domain
IPR000953 - Chromo_domain/shadow
IPR016197 - Chromodomain-like
IPR023779 - Chromodomain_CS

Pfam Domains:
PF00023 - Ankyrin repeat
PF12796 - Ankyrin repeats (3 copies)
PF00385 - Chromo (CHRromatin Organisation MOdifier) domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3LWE - X-ray MuPIT 3QO2 - X-ray MuPIT 3R93 - X-ray MuPIT 3SVM - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q99549
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0031625 ubiquitin protein ligase binding
GO:0035064 methylated histone binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0016567 protein ubiquitination
GO:0044030 regulation of DNA methylation
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0000788 nuclear nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005720 nuclear heterochromatin
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AK300258 - Homo sapiens cDNA FLJ61660 complete cds, highly similar to M-phase phosphoprotein 8.
LF384992 - JP 2014500723-A/192495: Polycomb-Associated Non-Coding RNAs.
MA620569 - JP 2018138019-A/192495: Polycomb-Associated Non-Coding RNAs.
BC017322 - Homo sapiens cDNA clone IMAGE:4553178, partial cds.
AK092556 - Homo sapiens cDNA FLJ35237 fis, clone PROST2001676, highly similar to M-PHASE PHOSPHOPROTEIN 8.
AX747597 - Sequence 1122 from Patent EP1308459.
AL832864 - Homo sapiens mRNA; cDNA DKFZp667L062 (from clone DKFZp667L062).
BC003542 - Homo sapiens M-phase phosphoprotein 8, mRNA (cDNA clone MGC:10809 IMAGE:3611719), complete cds.
AJ293409 - Homo sapiens mRNA differentially expressed in malignant melanoma, clone NN j2.
BC046214 - Homo sapiens M-phase phosphoprotein 8, mRNA (cDNA clone IMAGE:6194596), complete cds.
LF334608 - JP 2014500723-A/142111: Polycomb-Associated Non-Coding RNAs.
MA570185 - JP 2018138019-A/142111: Polycomb-Associated Non-Coding RNAs.
LF334610 - JP 2014500723-A/142113: Polycomb-Associated Non-Coding RNAs.
MA570187 - JP 2018138019-A/142113: Polycomb-Associated Non-Coding RNAs.
LF334611 - JP 2014500723-A/142114: Polycomb-Associated Non-Coding RNAs.
MA570188 - JP 2018138019-A/142114: Polycomb-Associated Non-Coding RNAs.
X98259 - H.sapiens mRNA for M-phase phosphoprotein, mpp8.
LF334612 - JP 2014500723-A/142115: Polycomb-Associated Non-Coding RNAs.
MA570189 - JP 2018138019-A/142115: Polycomb-Associated Non-Coding RNAs.
LF334613 - JP 2014500723-A/142116: Polycomb-Associated Non-Coding RNAs.
MA570190 - JP 2018138019-A/142116: Polycomb-Associated Non-Coding RNAs.
LF334614 - JP 2014500723-A/142117: Polycomb-Associated Non-Coding RNAs.
MA570191 - JP 2018138019-A/142117: Polycomb-Associated Non-Coding RNAs.
LF334615 - JP 2014500723-A/142118: Polycomb-Associated Non-Coding RNAs.
MA570192 - JP 2018138019-A/142118: Polycomb-Associated Non-Coding RNAs.
LF334617 - JP 2014500723-A/142120: Polycomb-Associated Non-Coding RNAs.
MA570194 - JP 2018138019-A/142120: Polycomb-Associated Non-Coding RNAs.
AK056785 - Homo sapiens cDNA FLJ32223 fis, clone PLACE6004312.
LF334620 - JP 2014500723-A/142123: Polycomb-Associated Non-Coding RNAs.
MA570197 - JP 2018138019-A/142123: Polycomb-Associated Non-Coding RNAs.
JD066563 - Sequence 47587 from Patent EP1572962.
JD259971 - Sequence 240995 from Patent EP1572962.
JD292806 - Sequence 273830 from Patent EP1572962.
JD536259 - Sequence 517283 from Patent EP1572962.
JD354407 - Sequence 335431 from Patent EP1572962.
JD515872 - Sequence 496896 from Patent EP1572962.
JD150819 - Sequence 131843 from Patent EP1572962.
JD345559 - Sequence 326583 from Patent EP1572962.
JD242838 - Sequence 223862 from Patent EP1572962.
JD064532 - Sequence 45556 from Patent EP1572962.
JD333252 - Sequence 314276 from Patent EP1572962.
JD333253 - Sequence 314277 from Patent EP1572962.
JD256593 - Sequence 237617 from Patent EP1572962.
JD256592 - Sequence 237616 from Patent EP1572962.
JD476818 - Sequence 457842 from Patent EP1572962.
JD069796 - Sequence 50820 from Patent EP1572962.
JD513972 - Sequence 494996 from Patent EP1572962.
JD397155 - Sequence 378179 from Patent EP1572962.
JD415030 - Sequence 396054 from Patent EP1572962.
JD120610 - Sequence 101634 from Patent EP1572962.
JD379779 - Sequence 360803 from Patent EP1572962.
JD094159 - Sequence 75183 from Patent EP1572962.
JD312267 - Sequence 293291 from Patent EP1572962.
JD312268 - Sequence 293292 from Patent EP1572962.
JD346805 - Sequence 327829 from Patent EP1572962.
JD504950 - Sequence 485974 from Patent EP1572962.
JD109628 - Sequence 90652 from Patent EP1572962.
JD212340 - Sequence 193364 from Patent EP1572962.
JD512620 - Sequence 493644 from Patent EP1572962.
JD082942 - Sequence 63966 from Patent EP1572962.
JD202259 - Sequence 183283 from Patent EP1572962.
JD433381 - Sequence 414405 from Patent EP1572962.
JD273354 - Sequence 254378 from Patent EP1572962.
JD429014 - Sequence 410038 from Patent EP1572962.
JD284813 - Sequence 265837 from Patent EP1572962.
JD340740 - Sequence 321764 from Patent EP1572962.
JD286793 - Sequence 267817 from Patent EP1572962.
JD043170 - Sequence 24194 from Patent EP1572962.
JD539119 - Sequence 520143 from Patent EP1572962.
JD071251 - Sequence 52275 from Patent EP1572962.
JD194824 - Sequence 175848 from Patent EP1572962.
JD194825 - Sequence 175849 from Patent EP1572962.
JD136079 - Sequence 117103 from Patent EP1572962.
JD243135 - Sequence 224159 from Patent EP1572962.
JD472595 - Sequence 453619 from Patent EP1572962.
JD472596 - Sequence 453620 from Patent EP1572962.
JD199644 - Sequence 180668 from Patent EP1572962.
JD494854 - Sequence 475878 from Patent EP1572962.
JD201400 - Sequence 182424 from Patent EP1572962.
JD442684 - Sequence 423708 from Patent EP1572962.
JD334839 - Sequence 315863 from Patent EP1572962.
JD045156 - Sequence 26180 from Patent EP1572962.
JD443557 - Sequence 424581 from Patent EP1572962.
JD443558 - Sequence 424582 from Patent EP1572962.
JD396708 - Sequence 377732 from Patent EP1572962.
JD143676 - Sequence 124700 from Patent EP1572962.
JD494855 - Sequence 475879 from Patent EP1572962.
JD263599 - Sequence 244623 from Patent EP1572962.
JD075373 - Sequence 56397 from Patent EP1572962.
JD209266 - Sequence 190290 from Patent EP1572962.
JD188524 - Sequence 169548 from Patent EP1572962.
JD334348 - Sequence 315372 from Patent EP1572962.
JD348257 - Sequence 329281 from Patent EP1572962.
JD226311 - Sequence 207335 from Patent EP1572962.
JD082419 - Sequence 63443 from Patent EP1572962.
JD061806 - Sequence 42830 from Patent EP1572962.
JD563324 - Sequence 544348 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z6F9, ENST00000361479.1, ENST00000361479.2, ENST00000361479.3, ENST00000361479.4, ENST00000361479.5, ENST00000361479.6, ENST00000361479.7, ENST00000361479.8, ENST00000361479.9, MPP8, MPP8_HUMAN, NM_017520, Q5JPE5, Q5JTQ0, Q86TK3, Q96MK4, Q99549, Q9BTP1, uc001umh.1, uc001umh.2, uc001umh.3, uc001umh.4, uc001umh.5
UCSC ID: ENST00000361479.10
RefSeq Accession: NM_017520
Protein: Q99549 (aka MPP8_HUMAN)
CCDS: CCDS9287.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.